Wall clock time and date at job start Wed Apr 1 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.57859 * 2 1 4 4 C 1.53189 * 109.58357 * 120.28128 * 2 1 3 5 5 C 1.53044 * 109.31067 * 174.56884 * 4 2 1 6 6 C 1.53046 * 109.53378 * 298.63486 * 5 4 2 7 7 H 1.09000 * 109.49721 * 301.40859 * 6 5 4 8 8 N 1.46508 * 109.49421 * 181.31548 * 6 5 4 9 9 C 1.34778 * 119.99582 * 154.99685 * 8 6 5 10 10 O 1.21547 * 120.00410 * 0.02562 * 9 8 6 11 11 C 1.47836 * 119.99474 * 179.97438 * 9 8 6 12 12 C 1.40024 * 120.56315 * 3.98107 * 11 9 8 13 13 C 1.38358 * 118.28773 * 179.73040 * 12 11 9 14 14 C 1.38349 * 119.30539 * 0.54040 * 13 12 11 15 15 N 1.31924 * 121.07917 * 359.72583 * 14 13 12 16 16 C 1.31700 * 121.87970 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.71608 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.46885 * 119.86804 * 17 16 15 19 19 F 1.39907 * 109.46918 * 239.86976 * 17 16 15 20 20 C 1.53188 * 109.31282 * 61.36646 * 6 5 4 21 21 N 1.46919 * 108.77635 * 305.36206 * 20 6 5 22 22 C 1.36941 * 120.63258 * 233.63032 * 21 20 6 23 23 H 1.07995 * 120.00004 * 146.60090 * 22 21 20 24 24 C 1.38809 * 119.99614 * 326.60570 * 22 21 20 25 25 N 1.31615 * 120.00388 * 347.78158 * 24 22 21 26 26 Si 1.86799 * 119.99784 * 167.79194 * 24 22 21 27 27 H 1.48501 * 109.47337 * 89.99491 * 26 24 22 28 28 H 1.48497 * 109.47270 * 209.99971 * 26 24 22 29 29 H 1.48504 * 109.46879 * 329.99522 * 26 24 22 30 30 H 1.08998 * 109.47521 * 299.99828 * 1 2 3 31 31 H 1.08999 * 109.46746 * 60.00281 * 1 2 3 32 32 H 1.08995 * 109.46709 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.50306 * 294.51685 * 4 2 1 34 34 H 1.09001 * 109.49768 * 54.61664 * 4 2 1 35 35 H 1.09000 * 109.46253 * 58.65499 * 5 4 2 36 36 H 1.08997 * 109.46171 * 178.61861 * 5 4 2 37 37 H 0.96997 * 120.00077 * 335.00409 * 8 6 5 38 38 H 1.07998 * 120.85528 * 359.97438 * 12 11 9 39 39 H 1.08009 * 120.34601 * 180.23939 * 13 12 11 40 40 H 1.07999 * 119.46555 * 179.69337 * 14 13 12 41 41 H 1.08997 * 109.47087 * 359.86827 * 17 16 15 42 42 H 1.08999 * 109.58675 * 65.14961 * 20 6 5 43 43 H 1.09004 * 109.58559 * 185.43084 * 20 6 5 44 44 H 0.97005 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8432 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5038 -2.6488 -0.0017 8 7 5.4181 -1.7974 -0.1121 9 6 5.9744 -2.8394 -0.7611 10 8 5.2668 -3.6655 -1.3034 11 6 7.4454 -2.9769 -0.8142 12 6 8.2698 -2.0789 -0.1254 13 6 9.6400 -2.2548 -0.2030 14 6 10.1472 -3.2954 -0.9606 15 7 9.3462 -4.1231 -1.6037 16 6 8.0358 -4.0006 -1.5560 17 6 7.1666 -4.9735 -2.3103 18 9 6.3308 -5.6456 -1.4120 19 9 6.3874 -4.2780 -3.2412 20 6 3.4686 -0.9435 -1.3210 21 7 2.0255 -0.6990 -1.1936 22 6 1.1585 -1.1151 -2.1685 23 1 0.1629 -1.4390 -1.9035 24 6 1.5595 -1.1208 -3.4974 25 7 2.6695 -0.5091 -3.8526 26 14 0.5236 -1.9962 -4.7819 27 1 -0.4719 -1.0489 -5.3447 28 1 1.4021 -2.4955 -5.8700 29 1 -0.1830 -3.1404 -4.1519 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.7638 -0.1654 2.1372 34 1 1.6049 -1.7246 1.2922 35 1 4.0045 0.1530 1.1023 36 1 3.9381 -1.3390 2.0703 37 1 5.9828 -1.1379 0.3205 38 1 7.8469 -1.2721 0.4548 39 1 10.3067 -1.5838 0.3184 40 1 11.2165 -3.4321 -1.0270 41 1 7.7961 -5.6954 -2.8305 42 1 3.9920 0.0065 -1.4287 43 1 3.6600 -1.5672 -2.1942 44 1 2.9499 -0.5133 -4.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071674661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:35 Heat of formation + Delta-G solvation = -70.978502 kcal Electronic energy + Delta-G solvation = -30869.340014 eV Core-core repulsion = 26458.264854 eV Total energy + Delta-G solvation = -4411.075160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.53276 -46.51181 -40.77426 -39.12062 -37.51900 -34.55639 -33.25399 -32.70819 -32.29923 -30.50485 -29.81870 -27.03733 -25.95920 -25.07824 -24.45019 -22.55219 -22.24831 -21.00820 -20.18540 -19.32867 -18.12952 -17.53215 -17.17199 -16.82907 -16.41367 -16.07650 -15.50051 -15.21325 -15.05728 -14.75563 -14.37831 -13.91927 -13.77731 -13.66446 -13.36139 -13.33114 -13.24365 -13.10816 -12.81067 -12.67512 -12.38144 -12.12199 -11.84075 -11.42706 -11.19948 -11.09636 -10.86117 -10.67145 -10.53624 -10.38820 -10.30117 -10.23455 -10.08445 -9.93826 -9.76870 -9.53288 -9.42342 -9.39486 -8.55645 -8.37605 -6.51489 -5.70039 -3.19095 0.32382 0.72867 2.89640 3.28369 3.35065 3.45795 3.53624 3.55382 3.64972 4.15946 4.33920 4.40788 4.49759 4.57768 4.71003 4.93027 5.06789 5.24184 5.28541 5.35042 5.38691 5.51954 5.56128 5.59047 5.64027 5.69423 5.98041 6.08776 6.10240 6.28765 6.31525 6.41300 6.47219 6.50312 6.64097 6.73946 6.89788 7.07673 7.15947 7.31854 7.40142 7.76093 7.80754 7.91789 8.50525 8.57779 9.29395 9.92191 10.49478 11.38127 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.004195 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.202744 B = 6672.569514 C = 8058.705510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.711 5.711 9 C 0.545 3.455 10 O -0.495 6.495 11 C -0.137 4.137 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.114 3.886 15 N -0.463 5.463 16 C 0.100 3.900 17 C 0.336 3.664 18 F -0.181 7.181 19 F -0.177 7.177 20 C 0.171 3.829 21 N -0.582 5.582 22 C -0.256 4.256 23 H 0.067 0.933 24 C 0.012 3.988 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.278 1.278 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.389 0.611 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.120 0.880 42 H 0.017 0.983 43 H 0.091 0.909 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.090 -2.073 10.879 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.103 0.897 8 N -0.363 5.363 9 C 0.328 3.672 10 O -0.369 6.369 11 C -0.142 4.142 12 C -0.075 4.075 13 C -0.179 4.179 14 C -0.043 4.043 15 N -0.172 5.172 16 C -0.040 4.040 17 C 0.281 3.719 18 F -0.162 7.162 19 F -0.158 7.158 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.386 4.386 23 H 0.085 0.915 24 C -0.188 4.188 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.203 1.203 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.223 0.777 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.137 0.863 42 H 0.035 0.965 43 H 0.109 0.891 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.904 -3.341 9.799 18.147 hybrid contribution -0.373 0.811 0.056 0.894 sum 14.531 -2.530 9.854 17.739 Atomic orbital electron populations 1.21785 0.95972 1.01395 1.00146 1.20490 0.93089 0.93495 0.87050 0.95842 1.22052 0.94154 1.01395 0.98993 1.21682 0.97566 0.99544 0.96614 1.22077 0.77007 1.01191 0.98467 0.89688 1.45934 1.08894 1.26065 1.55367 1.17876 0.86306 0.82758 0.80240 1.90940 1.62298 1.40813 1.42868 1.21070 0.95889 0.97339 0.99912 1.21849 0.93594 0.96719 0.95300 1.22233 0.95732 0.99651 1.00323 1.22951 1.00097 0.89949 0.91345 1.67333 1.03353 1.27127 1.19369 1.21945 0.91273 0.95019 0.95802 1.19786 0.83535 0.87572 0.80967 1.93052 1.73885 1.80103 1.69148 1.93113 1.76809 1.80817 1.65053 1.21025 0.83771 0.96713 0.94068 1.43960 1.02458 1.64689 1.19408 1.19058 0.96668 1.37445 0.85403 0.91529 1.25175 0.97599 0.98655 0.97359 1.69966 1.23998 1.43659 1.16578 0.86341 0.79531 0.79590 0.81571 1.21457 1.21531 1.20325 0.94416 0.91975 0.92823 0.92685 0.92029 0.92318 0.93104 0.77732 0.83668 0.83498 0.81522 0.86323 0.96538 0.89081 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.99 37.16 0.30 -2.27 16 2 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 5 C -0.12 -1.84 5.35 -26.68 -0.14 -1.98 16 6 C 0.12 2.27 2.60 -67.81 -0.18 2.10 16 7 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 8 N -0.71 -11.53 5.03 -54.63 -0.28 -11.80 16 9 C 0.54 9.83 7.53 -12.33 -0.09 9.73 16 10 O -0.49 -11.06 11.02 5.32 0.06 -11.01 16 11 C -0.14 -1.97 5.85 -104.82 -0.61 -2.59 16 12 C -0.05 -0.48 9.64 -38.87 -0.37 -0.86 16 13 C -0.16 -1.22 10.10 -39.50 -0.40 -1.62 16 14 C 0.11 0.99 11.17 -17.47 -0.20 0.80 16 15 N -0.46 -5.69 10.24 -9.14 -0.09 -5.78 16 16 C 0.10 1.46 6.31 -82.17 -0.52 0.94 16 17 C 0.34 5.35 5.02 36.01 0.18 5.53 16 18 F -0.18 -3.27 14.90 2.25 0.03 -3.24 16 19 F -0.18 -3.50 15.16 2.25 0.03 -3.47 16 20 C 0.17 4.16 4.82 -3.72 -0.02 4.15 16 21 N -0.58 -14.59 2.97 -164.78 -0.49 -15.08 16 22 C -0.26 -7.10 8.48 -15.06 -0.13 -7.23 16 23 H 0.07 1.80 6.35 -52.49 -0.33 1.47 16 24 C 0.01 0.34 5.00 -17.43 -0.09 0.25 16 25 N -0.90 -27.01 11.30 55.49 0.63 -26.38 16 26 Si 0.90 22.79 29.57 -169.99 -5.03 17.76 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 32 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 4.76 6.73 -40.82 -0.27 4.49 16 38 H 0.15 1.04 6.54 -52.49 -0.34 0.70 16 39 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.43 8.11 -51.93 -0.42 1.01 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.64 6.33 -51.93 -0.33 2.31 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -35.24 358.40 -8.20 -43.44 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.82 Total: 2.32 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -2.65 Total: 7.84 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.23 Total: -59.05 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -11.01 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.07 Total: -6.70 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.24 -8.20 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.543 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds