Wall clock time and date at job start Wed Apr 1 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.57859 * 2 1 4 4 C 1.53189 * 109.58357 * 120.28128 * 2 1 3 5 5 C 1.53044 * 109.31067 * 174.56884 * 4 2 1 6 6 C 1.53046 * 109.53378 * 298.63486 * 5 4 2 7 7 H 1.09000 * 109.49721 * 301.40859 * 6 5 4 8 8 N 1.46508 * 109.49421 * 181.31548 * 6 5 4 9 9 C 1.34778 * 119.99582 * 154.99685 * 8 6 5 10 10 O 1.21547 * 120.00410 * 0.02562 * 9 8 6 11 11 C 1.47836 * 119.99474 * 179.97438 * 9 8 6 12 12 C 1.40024 * 120.56315 * 3.98107 * 11 9 8 13 13 C 1.38358 * 118.28773 * 179.73040 * 12 11 9 14 14 C 1.38349 * 119.30539 * 0.54040 * 13 12 11 15 15 N 1.31924 * 121.07917 * 359.72583 * 14 13 12 16 16 C 1.31700 * 121.87970 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.71608 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.46885 * 119.86804 * 17 16 15 19 19 F 1.39907 * 109.46918 * 239.86976 * 17 16 15 20 20 C 1.53188 * 109.31282 * 61.36646 * 6 5 4 21 21 N 1.46919 * 108.77635 * 305.36206 * 20 6 5 22 22 C 1.36941 * 120.63258 * 233.63032 * 21 20 6 23 23 H 1.07995 * 120.00004 * 146.60090 * 22 21 20 24 24 C 1.38809 * 119.99614 * 326.60570 * 22 21 20 25 25 N 1.31615 * 120.00388 * 347.78158 * 24 22 21 26 26 Si 1.86799 * 119.99784 * 167.79194 * 24 22 21 27 27 H 1.48501 * 109.47337 * 89.99491 * 26 24 22 28 28 H 1.48497 * 109.47270 * 209.99971 * 26 24 22 29 29 H 1.48504 * 109.46879 * 329.99522 * 26 24 22 30 30 H 1.08998 * 109.47521 * 299.99828 * 1 2 3 31 31 H 1.08999 * 109.46746 * 60.00281 * 1 2 3 32 32 H 1.08995 * 109.46709 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.50306 * 294.51685 * 4 2 1 34 34 H 1.09001 * 109.49768 * 54.61664 * 4 2 1 35 35 H 1.09000 * 109.46253 * 58.65499 * 5 4 2 36 36 H 1.08997 * 109.46171 * 178.61861 * 5 4 2 37 37 H 0.96997 * 120.00077 * 335.00409 * 8 6 5 38 38 H 1.07998 * 120.85528 * 359.97438 * 12 11 9 39 39 H 1.08009 * 120.34601 * 180.23939 * 13 12 11 40 40 H 1.07999 * 119.46555 * 179.69337 * 14 13 12 41 41 H 1.08997 * 109.47087 * 359.86827 * 17 16 15 42 42 H 1.08999 * 109.58675 * 65.14961 * 20 6 5 43 43 H 1.09004 * 109.58559 * 185.43084 * 20 6 5 44 44 H 0.97005 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8432 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5038 -2.6488 -0.0017 8 7 5.4181 -1.7974 -0.1121 9 6 5.9744 -2.8394 -0.7611 10 8 5.2668 -3.6655 -1.3034 11 6 7.4454 -2.9769 -0.8142 12 6 8.2698 -2.0789 -0.1254 13 6 9.6400 -2.2548 -0.2030 14 6 10.1472 -3.2954 -0.9606 15 7 9.3462 -4.1231 -1.6037 16 6 8.0358 -4.0006 -1.5560 17 6 7.1666 -4.9735 -2.3103 18 9 6.3308 -5.6456 -1.4120 19 9 6.3874 -4.2780 -3.2412 20 6 3.4686 -0.9435 -1.3210 21 7 2.0255 -0.6990 -1.1936 22 6 1.1585 -1.1151 -2.1685 23 1 0.1629 -1.4390 -1.9035 24 6 1.5595 -1.1208 -3.4974 25 7 2.6695 -0.5091 -3.8526 26 14 0.5236 -1.9962 -4.7819 27 1 -0.4719 -1.0489 -5.3447 28 1 1.4021 -2.4955 -5.8700 29 1 -0.1830 -3.1404 -4.1519 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.7638 -0.1654 2.1372 34 1 1.6049 -1.7246 1.2922 35 1 4.0045 0.1530 1.1023 36 1 3.9381 -1.3390 2.0703 37 1 5.9828 -1.1379 0.3205 38 1 7.8469 -1.2721 0.4548 39 1 10.3067 -1.5838 0.3184 40 1 11.2165 -3.4321 -1.0270 41 1 7.7961 -5.6954 -2.8305 42 1 3.9920 0.0065 -1.4287 43 1 3.6600 -1.5672 -2.1942 44 1 2.9499 -0.5133 -4.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071674661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:34 Heat of formation + Delta-G solvation = -96.145135 kcal Electronic energy + Delta-G solvation = -30870.431321 eV Core-core repulsion = 26458.264854 eV Total energy + Delta-G solvation = -4412.166467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.86596 -47.88419 -41.77922 -40.44251 -39.10956 -36.11623 -34.72612 -34.07329 -33.26358 -31.98973 -31.67692 -28.21870 -27.59744 -26.74518 -25.51404 -24.04032 -23.52786 -22.37473 -21.67629 -20.98662 -19.24042 -18.60855 -18.32605 -18.31825 -18.15432 -17.41989 -17.10591 -16.43667 -16.17280 -16.11132 -15.81980 -15.61620 -15.28101 -15.05881 -14.79733 -14.65912 -14.46775 -14.23364 -14.18728 -14.13715 -14.06417 -13.49814 -13.23953 -13.05948 -12.78012 -12.71659 -12.55740 -12.37211 -12.32634 -12.15520 -11.99245 -11.66164 -11.42721 -11.17842 -11.12385 -11.09730 -10.67421 -10.55893 -10.42234 -10.07390 -8.57198 -7.86537 -5.37233 -0.59370 -0.05419 1.37817 1.43195 1.49880 1.78582 2.03199 2.35369 2.48704 2.61308 3.18968 3.29461 3.33041 3.50573 3.68917 3.72041 3.88190 3.95638 4.03044 4.09123 4.11059 4.23057 4.27936 4.37589 4.39629 4.61067 4.71413 4.78768 4.82423 4.89021 4.93575 5.01323 5.06383 5.18454 5.29222 5.32392 5.40299 5.45810 5.55759 5.60260 5.70091 5.78612 6.41224 6.50300 6.60087 7.15470 7.22957 7.89063 8.39610 9.18016 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.004195 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.202744 B = 6672.569514 C = 8058.705510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.133 3.867 7 H 0.050 0.950 8 N -0.698 5.698 9 C 0.537 3.463 10 O -0.551 6.551 11 C -0.166 4.166 12 C -0.044 4.044 13 C -0.136 4.136 14 C 0.118 3.882 15 N -0.479 5.479 16 C 0.079 3.921 17 C 0.321 3.679 18 F -0.200 7.200 19 F -0.208 7.208 20 C 0.185 3.815 21 N -0.603 5.603 22 C -0.253 4.253 23 H 0.070 0.930 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.954 3.046 27 H -0.275 1.275 28 H -0.301 1.301 29 H -0.272 1.272 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.175 0.825 39 H 0.199 0.801 40 H 0.212 0.788 41 H 0.152 0.848 42 H -0.001 1.001 43 H 0.033 0.967 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.421 -0.619 14.318 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.041 0.959 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.068 0.932 8 N -0.351 5.351 9 C 0.323 3.677 10 O -0.429 6.429 11 C -0.172 4.172 12 C -0.070 4.070 13 C -0.155 4.155 14 C -0.040 4.040 15 N -0.188 5.188 16 C -0.061 4.061 17 C 0.267 3.733 18 F -0.181 7.181 19 F -0.190 7.190 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.384 4.384 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.577 5.577 26 Si 0.783 3.217 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.197 1.197 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.249 0.751 38 H 0.193 0.807 39 H 0.217 0.783 40 H 0.228 0.772 41 H 0.169 0.831 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.239 -1.856 13.295 21.850 hybrid contribution -0.959 0.393 -0.944 1.402 sum 16.280 -1.463 12.352 20.488 Atomic orbital electron populations 1.21722 0.94852 1.01028 1.01023 1.20810 0.94228 0.93395 0.86677 0.95946 1.21960 0.94618 1.00818 0.98379 1.21651 0.97079 1.00031 0.95633 1.21551 0.78647 0.99203 0.97870 0.93191 1.45681 1.07853 1.26393 1.55164 1.18587 0.88114 0.82091 0.78951 1.90906 1.64100 1.42863 1.45053 1.20851 0.93737 0.99733 1.02897 1.22256 0.94438 0.96058 0.94262 1.22798 0.95032 0.99091 0.98534 1.23855 1.01645 0.88924 0.89536 1.67352 1.02195 1.28632 1.20581 1.21646 0.92202 0.95315 0.96894 1.20366 0.83247 0.88778 0.80919 1.92990 1.74755 1.80540 1.69808 1.93034 1.77938 1.81665 1.66328 1.20679 0.83954 0.95033 0.94592 1.44260 1.02366 1.65668 1.20397 1.19380 0.97006 1.35853 0.86119 0.91240 1.25879 0.98920 1.00189 0.99371 1.70125 1.25754 1.45799 1.16061 0.85471 0.78197 0.78892 0.79177 1.20118 1.22804 1.19730 0.90186 0.94422 0.93756 0.88385 0.93146 0.90469 0.89440 0.75070 0.80722 0.78344 0.77187 0.83111 0.98304 0.94812 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.99 71.98 0.57 -4.14 16 2 C 0.15 6.17 3.49 44.98 0.16 6.33 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.67 5.37 30.67 0.16 -3.51 16 5 C -0.11 -3.06 5.35 30.62 0.16 -2.90 16 6 C 0.13 5.25 2.60 45.07 0.12 5.36 16 7 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 8 N -0.70 -22.66 5.03 -445.03 -2.24 -24.90 16 9 C 0.54 20.24 7.53 86.78 0.65 20.90 16 10 O -0.55 -26.77 11.02 -3.86 -0.04 -26.81 16 11 C -0.17 -4.78 5.85 -19.99 -0.12 -4.90 16 12 C -0.04 -0.74 9.64 22.73 0.22 -0.52 16 13 C -0.14 -1.35 10.10 22.32 0.23 -1.12 16 14 C 0.12 1.55 11.17 84.71 0.95 2.49 16 15 N -0.48 -10.96 10.24 -182.84 -1.87 -12.83 16 16 C 0.08 2.33 6.31 42.89 0.27 2.60 16 17 C 0.32 10.96 5.02 71.24 0.36 11.32 16 18 F -0.20 -7.84 14.90 44.97 0.67 -7.17 16 19 F -0.21 -9.08 15.16 44.97 0.68 -8.40 16 20 C 0.18 9.44 4.82 86.36 0.42 9.85 16 21 N -0.60 -31.17 2.97 -675.25 -2.01 -33.18 16 22 C -0.25 -14.58 8.48 84.03 0.71 -13.87 16 23 H 0.07 3.88 6.35 -2.91 -0.02 3.86 16 24 C -0.05 -2.89 5.00 84.86 0.42 -2.47 16 25 N -0.93 -59.44 11.30 21.65 0.24 -59.19 16 26 Si 0.95 49.08 29.57 68.60 2.03 51.10 16 27 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 29 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.53 7.69 -2.39 -0.02 1.51 16 32 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 9.23 6.73 -92.71 -0.62 8.60 16 38 H 0.18 1.71 6.54 -2.91 -0.02 1.69 16 39 H 0.20 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.15 3.88 8.11 -2.39 -0.02 3.86 16 42 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 43 H 0.03 2.10 6.33 -2.38 -0.02 2.09 16 44 H 0.24 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -88.04 358.40 3.17 -84.87 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.42 Total: 11.06 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 5.29 Total: 25.44 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -5.87 Total: -130.10 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 9 Polarization: -16.92 SS G_CDS: 1.35 Total: -15.57 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.10 kcal Total: -88.04 3.17 -84.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.272 kcal (2) G-P(sol) polarization free energy of solvation -88.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds