Wall clock time and date at job start Wed Apr 1 2020 00:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58651 * 2 1 4 4 C 1.53189 * 109.58886 * 120.28816 * 2 1 3 5 5 C 1.53039 * 109.31700 * 174.42509 * 4 2 1 6 6 C 1.53036 * 109.53515 * 298.63246 * 5 4 2 7 7 H 1.09000 * 109.49998 * 181.34628 * 6 5 4 8 8 N 1.46500 * 109.50080 * 301.41070 * 6 5 4 9 9 C 1.34776 * 120.00741 * 204.99860 * 8 6 5 10 10 O 1.21558 * 119.99252 * 0.02562 * 9 8 6 11 11 C 1.47835 * 120.00365 * 180.02562 * 9 8 6 12 12 C 1.40026 * 120.56006 * 359.72225 * 11 9 8 13 13 C 1.38354 * 118.28787 * 180.25882 * 12 11 9 14 14 C 1.38355 * 119.30526 * 0.05522 * 13 12 11 15 15 N 1.31924 * 121.07848 * 359.94236 * 14 13 12 16 16 C 1.31699 * 121.87945 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.71516 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47284 * 120.01882 * 17 16 15 19 19 F 1.39903 * 109.47261 * 240.02485 * 17 16 15 20 20 C 1.53193 * 109.31565 * 61.36620 * 6 5 4 21 21 N 1.46928 * 109.58908 * 239.57400 * 2 1 3 22 22 C 1.36944 * 120.62785 * 6.62810 * 21 2 1 23 23 H 1.07998 * 119.99897 * 330.18397 * 22 21 2 24 24 C 1.38811 * 119.99907 * 150.18695 * 22 21 2 25 25 N 1.31619 * 120.00139 * 344.46723 * 24 22 21 26 26 Si 1.86797 * 120.00065 * 164.47453 * 24 22 21 27 27 H 1.48507 * 109.47189 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47375 * 119.99585 * 26 24 22 29 29 H 1.48503 * 109.46693 * 239.99725 * 26 24 22 30 30 H 1.08995 * 109.47353 * 299.70833 * 1 2 3 31 31 H 1.09002 * 109.47253 * 59.71894 * 1 2 3 32 32 H 1.09004 * 109.46942 * 179.71124 * 1 2 3 33 33 H 1.09000 * 109.49921 * 54.46595 * 4 2 1 34 34 H 1.09009 * 109.49452 * 294.37414 * 4 2 1 35 35 H 1.09001 * 109.46423 * 178.61212 * 5 4 2 36 36 H 1.08995 * 109.44734 * 58.64445 * 5 4 2 37 37 H 0.97009 * 119.99577 * 24.99948 * 8 6 5 38 38 H 1.08004 * 120.85305 * 0.25290 * 12 11 9 39 39 H 1.08004 * 120.34688 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.46152 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47366 * 0.02562 * 17 16 15 42 42 H 1.08997 * 109.58701 * 65.14797 * 20 6 5 43 43 H 1.08997 * 109.59181 * 185.58164 * 20 6 5 44 44 H 0.96996 * 120.00429 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5675 -0.8465 1.1712 6 6 3.9569 -1.6657 -0.0614 7 1 5.0412 -1.7701 -0.1012 8 7 3.3406 -2.9924 0.0184 9 6 3.8971 -4.0343 -0.6307 10 8 4.9107 -3.8732 -1.2820 11 6 3.2748 -5.3729 -0.5505 12 6 2.1104 -5.5728 0.2011 13 6 1.5709 -6.8460 0.2480 14 6 2.1936 -7.8712 -0.4415 15 7 3.2901 -7.6532 -1.1418 16 6 3.8411 -6.4595 -1.2177 17 6 5.0946 -6.2657 -2.0315 18 9 4.8532 -5.3314 -3.0444 19 9 6.1214 -5.8005 -1.2029 20 6 3.4651 -0.9485 -1.3226 21 7 2.0226 -0.7010 -1.1936 22 6 1.1537 -1.1153 -2.1677 23 1 0.1395 -1.3816 -1.9089 24 6 1.5766 -1.1932 -3.4875 25 7 2.6874 -0.5930 -3.8592 26 14 0.5690 -2.1496 -4.7362 27 1 -0.6263 -2.7268 -4.0702 28 1 0.1370 -1.2383 -5.8262 29 1 1.3954 -3.2446 -5.3048 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0052 33 1 1.6029 -1.7237 1.2934 34 1 1.7660 -0.1642 2.1370 35 1 3.9378 -1.3423 2.0685 36 1 4.0059 0.1488 1.0990 37 1 2.5319 -3.1210 0.5385 38 1 1.6455 -4.7543 0.7306 39 1 0.6733 -7.0376 0.8173 40 1 1.7748 -8.8660 -0.4062 41 1 5.3893 -7.2160 -2.4767 42 1 3.9903 0.0003 -1.4317 43 1 3.6518 -1.5744 -2.1952 44 1 2.9828 -0.6470 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071674662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:39 Heat of formation + Delta-G solvation = -68.392452 kcal Electronic energy + Delta-G solvation = -31704.141722 eV Core-core repulsion = 27293.178701 eV Total energy + Delta-G solvation = -4410.963020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.46493 -46.44186 -40.64208 -39.14396 -37.47489 -34.25927 -33.15613 -32.65238 -32.18001 -30.47951 -29.86759 -26.90566 -26.13524 -25.03622 -24.50918 -22.48222 -22.17991 -21.06195 -20.39159 -18.78283 -18.12278 -17.41122 -17.17415 -16.76115 -16.38869 -15.85860 -15.44773 -15.09533 -14.98254 -14.66999 -14.28818 -14.03845 -13.73613 -13.61313 -13.34483 -13.23374 -13.10110 -12.96212 -12.83115 -12.68695 -12.49540 -12.04115 -11.89036 -11.24398 -11.18354 -11.11021 -10.96610 -10.90139 -10.71334 -10.39127 -10.33294 -10.14563 -9.97844 -9.96164 -9.56673 -9.47325 -9.38231 -9.33157 -8.43591 -8.38375 -6.58669 -5.73592 -3.18352 0.46947 0.87946 3.04279 3.39407 3.44217 3.45017 3.49388 3.50984 3.82774 4.27510 4.44887 4.51342 4.53724 4.66020 4.86678 5.06163 5.19431 5.29744 5.34441 5.35513 5.37226 5.45838 5.48959 5.58427 5.72035 5.80588 5.98449 6.07956 6.13015 6.24086 6.29899 6.32699 6.41774 6.49582 6.57392 6.66372 6.87003 7.02766 7.09253 7.37760 7.52036 7.70595 7.84980 7.99898 8.50640 8.67958 9.24788 9.89286 10.45434 11.34322 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.005339 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.665080 B = 5243.505850 C = 5843.553691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.079 0.921 8 N -0.690 5.690 9 C 0.549 3.451 10 O -0.510 6.510 11 C -0.133 4.133 12 C -0.045 4.045 13 C -0.159 4.159 14 C 0.112 3.888 15 N -0.465 5.465 16 C 0.097 3.903 17 C 0.338 3.662 18 F -0.176 7.176 19 F -0.184 7.184 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.895 5.895 26 Si 0.892 3.108 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.288 1.288 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.392 0.608 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.118 0.882 42 H 0.026 0.974 43 H 0.097 0.903 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -10.984 12.135 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.097 0.903 8 N -0.341 5.341 9 C 0.333 3.667 10 O -0.387 6.387 11 C -0.138 4.138 12 C -0.071 4.071 13 C -0.179 4.179 14 C -0.046 4.046 15 N -0.173 5.173 16 C -0.044 4.044 17 C 0.283 3.717 18 F -0.157 7.157 19 F -0.165 7.165 20 C 0.035 3.965 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.190 4.190 25 N -0.538 5.538 26 Si 0.722 3.278 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.227 0.773 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.135 0.865 42 H 0.044 0.956 43 H 0.115 0.885 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.127 -11.466 11.034 15.914 hybrid contribution -1.480 0.265 -0.031 1.504 sum -1.354 -11.201 11.003 15.760 Atomic orbital electron populations 1.21787 0.96152 1.01145 1.00147 1.20462 0.92858 0.93684 0.87227 0.95741 1.22068 0.95171 1.00471 0.99207 1.21697 0.96977 1.00255 0.96762 1.21830 0.97113 0.81274 0.98348 0.90326 1.45685 1.29071 1.08536 1.50834 1.17786 0.84751 0.83526 0.80685 1.90874 1.24042 1.84306 1.39451 1.21051 0.97265 0.95916 0.99565 1.21853 0.92816 0.97864 0.94605 1.22222 1.01492 0.93365 1.00806 1.22912 0.90375 0.99867 0.91397 1.67306 1.10871 1.21953 1.17213 1.21898 0.97076 0.89003 0.96392 1.19749 0.81907 0.89974 0.80029 1.93113 1.94469 1.68639 1.59446 1.93031 1.59529 1.90757 1.73179 1.21182 0.83752 0.97104 0.94423 1.44041 1.02688 1.64653 1.19131 1.19059 0.94958 1.38277 0.86022 0.91548 1.25055 0.97676 0.99287 0.96993 1.69978 1.23790 1.43355 1.16703 0.86399 0.79565 0.79941 0.81908 1.20458 1.21721 1.21472 0.94470 0.92044 0.93062 0.92980 0.92820 0.93021 0.90943 0.77260 0.83745 0.83564 0.81618 0.86469 0.95565 0.88498 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.95 37.16 0.30 -2.07 16 2 C 0.16 3.15 3.50 -67.60 -0.24 2.91 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.98 5.20 -26.61 -0.14 -2.11 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.25 2.81 -67.81 -0.19 2.06 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 8 N -0.69 -12.18 4.87 -54.64 -0.27 -12.45 16 9 C 0.55 10.59 7.55 -12.33 -0.09 10.49 16 10 O -0.51 -11.51 11.00 5.31 0.06 -11.46 16 11 C -0.13 -2.17 5.85 -104.82 -0.61 -2.78 16 12 C -0.04 -0.56 9.65 -38.87 -0.37 -0.93 16 13 C -0.16 -1.54 10.10 -39.50 -0.40 -1.94 16 14 C 0.11 1.16 11.17 -17.47 -0.20 0.97 16 15 N -0.46 -6.40 10.24 -9.15 -0.09 -6.49 16 16 C 0.10 1.55 6.31 -82.17 -0.52 1.04 16 17 C 0.34 5.65 5.02 36.00 0.18 5.83 16 18 F -0.18 -3.64 15.05 2.25 0.03 -3.61 16 19 F -0.18 -3.34 15.01 2.25 0.03 -3.30 16 20 C 0.16 3.83 4.88 -3.71 -0.02 3.82 16 21 N -0.58 -13.57 2.90 -164.78 -0.48 -14.05 16 22 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 23 H 0.07 1.70 6.23 -52.49 -0.33 1.37 16 24 C 0.01 0.26 4.94 -17.43 -0.09 0.18 16 25 N -0.89 -26.44 11.23 55.49 0.62 -25.82 16 26 Si 0.89 22.26 29.58 -169.99 -5.03 17.23 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 32 H 0.05 0.90 7.40 -51.93 -0.38 0.51 16 33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.39 5.99 4.88 -40.82 -0.20 5.79 16 38 H 0.14 1.49 6.52 -52.48 -0.34 1.15 16 39 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.50 8.11 -51.93 -0.42 1.08 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 2.74 6.14 -51.93 -0.32 2.42 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -33.52 354.51 -8.07 -41.60 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.63 Total: 4.25 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.67 Total: 8.74 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.21 Total: -58.80 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.06 Total: -11.46 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.07 Total: -6.91 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.52 -8.07 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.795 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds