Wall clock time and date at job start Wed Apr 1 2020 00:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58651 * 2 1 4 4 C 1.53189 * 109.58886 * 120.28816 * 2 1 3 5 5 C 1.53039 * 109.31700 * 174.42509 * 4 2 1 6 6 C 1.53036 * 109.53515 * 298.63246 * 5 4 2 7 7 H 1.09000 * 109.49998 * 181.34628 * 6 5 4 8 8 N 1.46500 * 109.50080 * 301.41070 * 6 5 4 9 9 C 1.34776 * 120.00741 * 204.99860 * 8 6 5 10 10 O 1.21558 * 119.99252 * 0.02562 * 9 8 6 11 11 C 1.47835 * 120.00365 * 180.02562 * 9 8 6 12 12 C 1.40026 * 120.56006 * 359.72225 * 11 9 8 13 13 C 1.38354 * 118.28787 * 180.25882 * 12 11 9 14 14 C 1.38355 * 119.30526 * 0.05522 * 13 12 11 15 15 N 1.31924 * 121.07848 * 359.94236 * 14 13 12 16 16 C 1.31699 * 121.87945 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.71516 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47284 * 120.01882 * 17 16 15 19 19 F 1.39903 * 109.47261 * 240.02485 * 17 16 15 20 20 C 1.53193 * 109.31565 * 61.36620 * 6 5 4 21 21 N 1.46928 * 109.58908 * 239.57400 * 2 1 3 22 22 C 1.36944 * 120.62785 * 6.62810 * 21 2 1 23 23 H 1.07998 * 119.99897 * 330.18397 * 22 21 2 24 24 C 1.38811 * 119.99907 * 150.18695 * 22 21 2 25 25 N 1.31619 * 120.00139 * 344.46723 * 24 22 21 26 26 Si 1.86797 * 120.00065 * 164.47453 * 24 22 21 27 27 H 1.48507 * 109.47189 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47375 * 119.99585 * 26 24 22 29 29 H 1.48503 * 109.46693 * 239.99725 * 26 24 22 30 30 H 1.08995 * 109.47353 * 299.70833 * 1 2 3 31 31 H 1.09002 * 109.47253 * 59.71894 * 1 2 3 32 32 H 1.09004 * 109.46942 * 179.71124 * 1 2 3 33 33 H 1.09000 * 109.49921 * 54.46595 * 4 2 1 34 34 H 1.09009 * 109.49452 * 294.37414 * 4 2 1 35 35 H 1.09001 * 109.46423 * 178.61212 * 5 4 2 36 36 H 1.08995 * 109.44734 * 58.64445 * 5 4 2 37 37 H 0.97009 * 119.99577 * 24.99948 * 8 6 5 38 38 H 1.08004 * 120.85305 * 0.25290 * 12 11 9 39 39 H 1.08004 * 120.34688 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.46152 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47366 * 0.02562 * 17 16 15 42 42 H 1.08997 * 109.58701 * 65.14797 * 20 6 5 43 43 H 1.08997 * 109.59181 * 185.58164 * 20 6 5 44 44 H 0.96996 * 120.00429 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5675 -0.8465 1.1712 6 6 3.9569 -1.6657 -0.0614 7 1 5.0412 -1.7701 -0.1012 8 7 3.3406 -2.9924 0.0184 9 6 3.8971 -4.0343 -0.6307 10 8 4.9107 -3.8732 -1.2820 11 6 3.2748 -5.3729 -0.5505 12 6 2.1104 -5.5728 0.2011 13 6 1.5709 -6.8460 0.2480 14 6 2.1936 -7.8712 -0.4415 15 7 3.2901 -7.6532 -1.1418 16 6 3.8411 -6.4595 -1.2177 17 6 5.0946 -6.2657 -2.0315 18 9 4.8532 -5.3314 -3.0444 19 9 6.1214 -5.8005 -1.2029 20 6 3.4651 -0.9485 -1.3226 21 7 2.0226 -0.7010 -1.1936 22 6 1.1537 -1.1153 -2.1677 23 1 0.1395 -1.3816 -1.9089 24 6 1.5766 -1.1932 -3.4875 25 7 2.6874 -0.5930 -3.8592 26 14 0.5690 -2.1496 -4.7362 27 1 -0.6263 -2.7268 -4.0702 28 1 0.1370 -1.2383 -5.8262 29 1 1.3954 -3.2446 -5.3048 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0052 33 1 1.6029 -1.7237 1.2934 34 1 1.7660 -0.1642 2.1370 35 1 3.9378 -1.3423 2.0685 36 1 4.0059 0.1488 1.0990 37 1 2.5319 -3.1210 0.5385 38 1 1.6455 -4.7543 0.7306 39 1 0.6733 -7.0376 0.8173 40 1 1.7748 -8.8660 -0.4062 41 1 5.3893 -7.2160 -2.4767 42 1 3.9903 0.0003 -1.4317 43 1 3.6518 -1.5744 -2.1952 44 1 2.9828 -0.6470 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071674662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:38 Heat of formation + Delta-G solvation = -91.330511 kcal Electronic energy + Delta-G solvation = -31705.136391 eV Core-core repulsion = 27293.178701 eV Total energy + Delta-G solvation = -4411.957689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84682 -47.86161 -41.76135 -40.51078 -39.01467 -35.86830 -34.61254 -34.04137 -33.24544 -31.91409 -31.66757 -28.15420 -27.68644 -26.75079 -25.59826 -23.92754 -23.55889 -22.36378 -21.93495 -20.40292 -19.31503 -18.58328 -18.39180 -18.18792 -18.13992 -17.19460 -17.09302 -16.40396 -16.13951 -16.06234 -15.83519 -15.64493 -15.22652 -15.00516 -14.70938 -14.63454 -14.37631 -14.26228 -14.14639 -14.08656 -14.01649 -13.61777 -13.22762 -13.01137 -12.87846 -12.64601 -12.53508 -12.42228 -12.33056 -12.11256 -12.06017 -11.57708 -11.22549 -11.14531 -11.10587 -11.02843 -10.67572 -10.53091 -10.40095 -9.93476 -8.56989 -7.82513 -5.27715 -0.56479 -0.04727 1.36266 1.40297 1.47770 1.84646 2.18120 2.37427 2.48597 2.65271 3.19274 3.33897 3.34947 3.58644 3.63893 3.70836 3.88979 4.01726 4.05276 4.09963 4.12403 4.18464 4.28004 4.38338 4.49542 4.66211 4.74908 4.80822 4.83785 4.94023 4.97238 5.05126 5.09275 5.12479 5.27448 5.32427 5.42758 5.59021 5.61775 5.67701 5.74053 5.75183 6.44203 6.54247 6.63160 7.18542 7.28813 7.93426 8.44300 9.22622 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.005339 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.665080 B = 5243.505850 C = 5843.553691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.012 0.988 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.063 0.937 8 N -0.680 5.680 9 C 0.539 3.461 10 O -0.557 6.557 11 C -0.166 4.166 12 C -0.047 4.047 13 C -0.137 4.137 14 C 0.116 3.884 15 N -0.478 5.478 16 C 0.075 3.925 17 C 0.325 3.675 18 F -0.208 7.208 19 F -0.198 7.198 20 C 0.173 3.827 21 N -0.592 5.592 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.055 4.055 25 N -0.935 5.935 26 Si 0.943 3.057 27 H -0.254 1.254 28 H -0.294 1.294 29 H -0.310 1.310 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.406 0.594 38 H 0.166 0.834 39 H 0.197 0.803 40 H 0.212 0.788 41 H 0.152 0.848 42 H -0.005 1.005 43 H 0.044 0.956 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 -13.095 16.079 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.029 0.971 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.081 0.919 8 N -0.332 5.332 9 C 0.325 3.675 10 O -0.436 6.436 11 C -0.171 4.171 12 C -0.073 4.073 13 C -0.156 4.156 14 C -0.041 4.041 15 N -0.187 5.187 16 C -0.064 4.064 17 C 0.270 3.730 18 F -0.189 7.189 19 F -0.179 7.179 20 C 0.046 3.954 21 N -0.316 5.316 22 C -0.362 4.362 23 H 0.097 0.903 24 C -0.250 4.250 25 N -0.582 5.582 26 Si 0.773 3.227 27 H -0.178 1.178 28 H -0.222 1.222 29 H -0.238 1.238 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.184 0.816 39 H 0.215 0.785 40 H 0.229 0.771 41 H 0.169 0.831 42 H 0.012 0.988 43 H 0.062 0.938 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.371 -13.576 15.043 20.541 hybrid contribution -0.475 0.872 -1.168 1.533 sum -3.846 -12.704 13.875 19.201 Atomic orbital electron populations 1.21718 0.94483 1.01506 1.00786 1.20798 0.94325 0.93163 0.87035 0.97054 1.21957 0.94397 1.01188 0.98101 1.21669 0.97586 0.99785 0.95773 1.21489 0.96229 0.82098 0.97772 0.91937 1.45529 1.29432 1.07596 1.50649 1.18438 0.84334 0.85084 0.79689 1.90844 1.26217 1.85293 1.41277 1.20923 0.99587 0.94096 1.02541 1.22192 0.91299 1.00061 0.93727 1.22777 1.02040 0.91464 0.99327 1.23828 0.88735 1.02180 0.89339 1.67343 1.12401 1.20573 1.18362 1.21702 0.97236 0.90128 0.97311 1.20311 0.82744 0.90089 0.79809 1.93036 1.94751 1.70128 1.60969 1.92980 1.60319 1.91057 1.73575 1.20810 0.84386 0.95114 0.95112 1.44248 1.02023 1.65345 1.20003 1.19427 0.95368 1.35302 0.86146 0.90273 1.25741 0.98891 1.01283 0.99094 1.70157 1.25973 1.46101 1.16004 0.85549 0.78838 0.78143 0.80155 1.17795 1.22159 1.23843 0.90525 0.94837 0.92678 0.91562 0.88935 0.89518 0.90946 0.75598 0.81623 0.78540 0.77105 0.83071 0.98751 0.93795 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 7.95 71.98 0.57 -3.49 16 2 C 0.15 5.52 3.50 44.97 0.16 5.68 16 3 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 4 C -0.12 -3.08 5.20 30.67 0.16 -2.92 16 5 C -0.11 -3.09 5.59 30.62 0.17 -2.92 16 6 C 0.13 4.98 2.81 45.07 0.13 5.11 16 7 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 8 N -0.68 -23.74 4.87 -445.05 -2.17 -25.91 16 9 C 0.54 21.43 7.55 86.78 0.66 22.09 16 10 O -0.56 -26.99 11.00 -3.90 -0.04 -27.03 16 11 C -0.17 -5.33 5.85 -20.00 -0.12 -5.45 16 12 C -0.05 -1.00 9.65 22.73 0.22 -0.78 16 13 C -0.14 -1.91 10.10 22.33 0.23 -1.68 16 14 C 0.12 1.88 11.17 84.71 0.95 2.83 16 15 N -0.48 -12.14 10.24 -182.85 -1.87 -14.01 16 16 C 0.08 2.42 6.31 42.89 0.27 2.69 16 17 C 0.32 11.41 5.02 71.23 0.36 11.77 16 18 F -0.21 -9.32 15.05 44.97 0.68 -8.64 16 19 F -0.20 -7.67 15.01 44.97 0.67 -7.00 16 20 C 0.17 8.64 4.88 86.36 0.42 9.06 16 21 N -0.59 -27.87 2.90 -675.24 -1.96 -29.83 16 22 C -0.23 -12.18 8.58 84.03 0.72 -11.46 16 23 H 0.08 3.92 6.23 -2.91 -0.02 3.91 16 24 C -0.06 -3.19 4.94 84.86 0.42 -2.77 16 25 N -0.94 -58.98 11.23 21.65 0.24 -58.74 16 26 Si 0.94 47.19 29.58 68.60 2.03 49.22 16 27 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.31 -16.49 7.11 99.48 0.71 -15.78 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.23 7.67 -2.39 -0.02 1.21 16 32 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 33 H 0.07 1.59 6.40 -2.39 -0.02 1.57 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 11.38 4.88 -92.70 -0.45 10.93 16 38 H 0.17 2.67 6.52 -2.91 -0.02 2.65 16 39 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.21 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.15 4.02 8.11 -2.38 -0.02 4.00 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.04 2.68 6.14 -2.39 -0.01 2.66 16 44 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -82.86 354.51 3.48 -79.38 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.59 Total: 14.82 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 5.31 Total: 27.75 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.76 Total: -128.49 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.04 Total: -27.03 kcal Atomic # 9 Polarization: -16.99 SS G_CDS: 1.35 Total: -15.64 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -82.86 3.48 -79.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.953 kcal (2) G-P(sol) polarization free energy of solvation -82.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds