Wall clock time and date at job start Tue Mar 31 2020 22:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.08993 * 109.87862 * 54.13289 * 3 2 1 5 5 C 1.54326 * 110.01018 * 293.03285 * 3 2 1 6 6 H 1.09003 * 110.72109 * 336.86479 * 5 3 2 7 7 N 1.46501 * 110.72192 * 99.95518 * 5 3 2 8 8 C 1.34768 * 120.00237 * 205.00167 * 7 5 3 9 9 O 1.21546 * 120.00216 * 359.97438 * 8 7 5 10 10 C 1.47845 * 119.99960 * 180.02562 * 8 7 5 11 11 C 1.40026 * 120.56075 * 179.97438 * 10 8 7 12 12 C 1.38353 * 118.28989 * 179.97438 * 11 10 8 13 13 C 1.38358 * 119.30065 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.45924 * 179.97438 * 13 12 11 15 15 F 1.39897 * 109.47275 * 210.00146 * 14 13 12 16 16 F 1.39900 * 109.47164 * 330.00277 * 14 13 12 17 17 N 1.31921 * 121.08193 * 0.02562 * 13 12 11 18 18 C 1.31695 * 121.88120 * 359.67865 * 17 13 12 19 19 C 1.55150 * 102.94562 * 218.32307 * 5 3 2 20 20 C 1.54689 * 101.67867 * 35.33379 * 19 5 3 21 21 N 1.47020 * 109.88233 * 175.15318 * 3 2 1 22 22 C 1.36938 * 125.64739 * 298.47577 * 21 3 2 23 23 H 1.08005 * 119.99480 * 347.82561 * 22 21 3 24 24 C 1.38808 * 120.00550 * 168.10310 * 22 21 3 25 25 N 1.31626 * 119.99543 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00543 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47026 * 59.99992 * 26 24 22 28 28 H 1.48494 * 109.47425 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47237 * 300.00440 * 26 24 22 30 30 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 31 31 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 32 32 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 33 33 H 1.09000 * 109.47336 * 239.99825 * 2 1 3 34 34 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 35 35 H 0.97010 * 119.99248 * 25.00321 * 7 5 3 36 36 H 1.07997 * 120.85367 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.35193 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47164 * 90.00045 * 14 13 12 39 39 H 1.08001 * 119.72036 * 180.29368 * 18 17 13 40 40 H 1.09001 * 111.00651 * 153.57675 * 19 5 3 41 41 H 1.09007 * 111.00616 * 277.43099 * 19 5 3 42 42 H 1.09001 * 110.39799 * 204.36620 * 20 19 5 43 43 H 1.09000 * 110.23668 * 82.11083 * 20 19 5 44 44 H 0.96999 * 119.99985 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8306 5 6 1.6810 2.1295 -1.3345 6 1 1.5269 1.3896 -2.1200 7 7 0.4935 2.9735 -1.1801 8 6 -0.2789 3.2520 -2.2488 9 8 0.0100 2.8034 -3.3409 10 6 -1.4769 4.1042 -2.0930 11 6 -2.2874 4.4015 -3.1955 12 6 -3.3974 5.2030 -2.9962 13 6 -3.6682 5.6810 -1.7264 14 6 -4.8759 6.5549 -1.5054 15 9 -4.6247 7.4398 -0.4513 16 9 -5.1453 7.2815 -2.6701 17 7 -2.8859 5.3852 -0.7061 18 6 -1.8217 4.6219 -0.8441 19 6 2.9349 2.9947 -1.6283 20 6 4.0702 2.0954 -1.0849 21 7 3.5054 1.4549 0.1168 22 6 4.2263 0.9588 1.1701 23 1 3.7255 0.6921 2.0892 24 6 5.6012 0.8039 1.0587 25 7 6.2122 1.1345 -0.0593 26 14 6.5845 0.1279 2.4958 27 1 6.0964 -1.2336 2.8328 28 1 8.0210 0.0616 2.1252 29 1 6.4180 1.0186 3.6723 30 1 -0.3633 -1.0230 0.0976 31 1 -0.3634 0.5960 0.8372 32 1 -0.3634 0.4270 -0.9348 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.2632 3.3318 -0.3085 36 1 -2.0526 4.0144 -4.1760 37 1 -4.0456 5.4530 -3.8231 38 1 -5.7354 5.9313 -1.2592 39 1 -1.2081 4.3981 0.0161 40 1 3.0488 3.1668 -2.6986 41 1 2.8946 3.9385 -1.0845 42 1 4.9389 2.6983 -0.8207 43 1 4.3411 1.3419 -1.8245 44 1 7.1729 1.0260 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087596098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:20 Heat of formation + Delta-G solvation = -95.593925 kcal Electronic energy + Delta-G solvation = -29223.900519 eV Core-core repulsion = 24811.757954 eV Total energy + Delta-G solvation = -4412.142565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.01100 -48.03301 -41.86917 -40.62091 -39.19865 -35.75509 -34.46391 -33.92794 -33.60500 -33.05931 -30.85213 -28.72652 -27.71302 -26.30984 -25.02432 -24.26890 -23.40274 -22.24869 -21.72220 -21.25848 -19.24754 -18.83748 -18.61507 -18.52108 -18.28267 -17.59659 -16.93385 -16.58641 -16.22398 -16.12466 -15.80211 -15.55535 -15.44123 -14.94183 -14.86960 -14.81641 -14.44444 -14.34816 -14.22357 -14.09814 -13.75939 -13.64160 -13.55962 -13.25288 -12.89383 -12.68707 -12.60015 -12.34913 -12.23198 -12.06378 -11.99655 -11.95639 -11.55666 -11.43216 -11.31067 -11.14319 -10.69493 -10.65249 -10.46463 -10.04570 -8.83990 -7.83481 -5.21392 -0.71669 0.02385 1.48050 1.50342 1.56459 1.61708 1.92342 2.29255 2.51829 2.58777 3.09870 3.20421 3.35138 3.46735 3.61920 3.63930 3.75380 3.83022 3.86711 3.90009 4.01623 4.14826 4.18792 4.36862 4.41364 4.46689 4.60608 4.64143 4.73016 4.76871 4.84814 4.91458 5.02044 5.12408 5.20603 5.25358 5.29306 5.45159 5.50634 5.57821 5.63866 5.73992 6.24498 6.40906 6.52632 7.06613 7.10203 7.78101 8.43829 9.26626 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.002305 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.154701 B =12146.052561 C =12379.396789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.054 0.946 5 C 0.157 3.843 6 H 0.084 0.916 7 N -0.693 5.693 8 C 0.565 3.435 9 O -0.568 6.568 10 C -0.174 4.174 11 C -0.018 4.018 12 C -0.137 4.137 13 C 0.060 3.940 14 C 0.325 3.675 15 F -0.202 7.202 16 F -0.197 7.197 17 N -0.477 5.477 18 C 0.141 3.859 19 C -0.142 4.142 20 C 0.179 3.821 21 N -0.613 5.613 22 C -0.230 4.230 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.276 1.276 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.413 0.587 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.186 0.814 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.046 0.954 43 H -0.008 1.008 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.020 8.644 -3.668 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.102 0.898 7 N -0.344 5.344 8 C 0.352 3.648 9 O -0.448 6.448 10 C -0.180 4.180 11 C -0.044 4.044 12 C -0.156 4.156 13 C -0.078 4.078 14 C 0.271 3.729 15 F -0.183 7.183 16 F -0.178 7.178 17 N -0.185 5.185 18 C -0.017 4.017 19 C -0.182 4.182 20 C 0.054 3.946 21 N -0.338 5.338 22 C -0.359 4.359 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.251 0.749 36 H 0.178 0.822 37 H 0.197 0.803 38 H 0.192 0.808 39 H 0.203 0.797 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.798 8.660 -3.540 26.504 hybrid contribution 1.594 -0.646 0.041 1.720 sum -23.204 8.014 -3.499 24.798 Atomic orbital electron populations 1.21657 0.93834 1.01984 1.01752 1.21907 0.96466 0.97592 1.00654 1.21269 0.84575 0.94663 0.94380 0.92819 1.21721 0.83590 0.91987 0.97604 0.89820 1.45753 1.26056 1.50992 1.11649 1.18228 0.82577 0.79973 0.83985 1.90785 1.73129 1.54017 1.26856 1.21045 0.97598 1.02424 0.96897 1.21946 0.91118 0.91904 0.99478 1.22096 0.98313 0.97118 0.98112 1.22277 0.96667 0.97860 0.91037 1.20534 0.96332 0.83618 0.72391 1.93016 1.95780 1.71675 1.57864 1.93021 1.94622 1.80103 1.50045 1.67357 1.04765 1.12862 1.33526 1.23259 0.92274 0.89986 0.96228 1.23214 0.95535 0.98809 1.00625 1.21146 0.93922 0.92542 0.87037 1.44669 1.00691 1.68902 1.19505 1.19274 0.89746 1.34781 0.92140 0.89872 1.25661 0.98108 1.02274 0.99659 1.70131 1.08444 1.54437 1.26888 0.85217 0.77118 0.78569 0.78819 1.20420 1.22510 1.20150 0.92314 0.91444 0.93212 0.94466 0.93223 0.74920 0.82232 0.80323 0.80822 0.79739 0.91315 0.90750 0.93587 0.98982 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.65 71.98 0.69 -2.72 16 2 C -0.13 -4.39 5.43 30.60 0.17 -4.23 16 3 C 0.16 5.81 2.91 45.34 0.13 5.94 16 4 H 0.05 1.81 7.72 -2.39 -0.02 1.80 16 5 C 0.16 5.17 2.10 46.18 0.10 5.26 16 6 H 0.08 3.07 7.18 -2.39 -0.02 3.05 16 7 N -0.69 -16.99 4.91 -439.80 -2.16 -19.15 16 8 C 0.57 14.37 7.78 86.79 0.68 15.05 16 9 O -0.57 -18.76 16.07 -3.86 -0.06 -18.82 16 10 C -0.17 -3.37 5.89 -19.99 -0.12 -3.49 16 11 C -0.02 -0.29 9.72 22.73 0.22 -0.07 16 12 C -0.14 -1.70 9.42 22.33 0.21 -1.49 16 13 C 0.06 0.88 6.58 42.57 0.28 1.16 16 14 C 0.33 3.59 5.72 71.24 0.41 4.00 16 15 F -0.20 -3.53 17.05 44.97 0.77 -2.76 16 16 F -0.20 -2.44 16.45 44.97 0.74 -1.70 16 17 N -0.48 -8.67 9.94 -182.81 -1.82 -10.49 16 18 C 0.14 2.39 10.71 85.02 0.91 3.30 16 19 C -0.14 -5.31 6.76 31.91 0.22 -5.10 16 20 C 0.18 8.72 5.45 86.78 0.47 9.19 16 21 N -0.61 -29.67 3.13 -668.70 -2.09 -31.77 16 22 C -0.23 -12.27 9.72 84.03 0.82 -11.45 16 23 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 24 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 25 N -0.95 -56.37 10.48 21.65 0.23 -56.14 16 26 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.25 7.48 -2.38 -0.02 1.24 16 33 H 0.04 1.42 8.03 -2.39 -0.02 1.40 16 34 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 35 H 0.41 7.70 6.43 -92.70 -0.60 7.11 16 36 H 0.16 2.47 7.74 -2.91 -0.02 2.45 16 37 H 0.18 1.17 7.59 -2.91 -0.02 1.15 16 38 H 0.18 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.19 2.27 6.42 -2.91 -0.02 2.25 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.05 2.53 6.75 -2.39 -0.02 2.51 16 43 H -0.01 -0.43 8.11 -2.39 -0.02 -0.45 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -71.41 370.35 3.72 -67.70 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.44 Total: 14.00 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.65 Total: 12.29 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.84 Total: -117.55 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 1.51 Total: -4.46 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.41 3.72 -67.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087596098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.898 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds