Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21556 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.47834 * 120.00227 * 179.97438 * 8 7 5 11 11 C 1.40025 * 120.55918 * 359.97438 * 10 8 7 12 12 C 1.38356 * 118.28996 * 179.97438 * 11 10 8 13 13 C 1.38361 * 119.29971 * 359.97438 * 12 11 10 14 14 N 1.31922 * 121.08056 * 0.02780 * 13 12 11 15 15 C 1.31690 * 121.87696 * 359.67807 * 14 13 12 16 16 C 1.50709 * 119.71323 * 180.28724 * 15 14 13 17 17 F 1.39906 * 109.47047 * 120.29252 * 16 15 14 18 18 F 1.39898 * 109.47398 * 240.29030 * 16 15 14 19 19 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 20 20 C 1.54910 * 101.57974 * 35.30613 * 19 5 3 21 21 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 22 22 C 1.36937 * 125.64711 * 298.39400 * 21 3 2 23 23 H 1.08001 * 119.99698 * 137.66376 * 22 21 3 24 24 C 1.38811 * 120.00174 * 317.66370 * 22 21 3 25 25 N 1.31612 * 120.00077 * 165.29696 * 24 22 21 26 26 Si 1.86795 * 119.99943 * 345.29056 * 24 22 21 27 27 H 1.48500 * 109.46981 * 90.64905 * 26 24 22 28 28 H 1.48504 * 109.47384 * 330.65296 * 26 24 22 29 29 H 1.48495 * 109.47247 * 210.65317 * 26 24 22 30 30 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 31 31 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 32 32 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 33 33 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 34 34 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 35 35 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 36 36 H 1.08002 * 120.85467 * 359.95306 * 11 10 8 37 37 H 1.08000 * 120.35327 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.45511 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47205 * 0.29489 * 16 15 14 40 40 H 1.09004 * 111.00712 * 277.23419 * 19 5 3 41 41 H 1.08998 * 111.00975 * 153.37963 * 19 5 3 42 42 H 1.09004 * 110.36479 * 204.15215 * 20 19 5 43 43 H 1.08999 * 110.36730 * 81.83661 * 20 19 5 44 44 H 0.97006 * 120.00357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0212 0.8694 -1.0815 10 6 5.6945 1.6810 -3.2482 11 6 4.8244 2.2918 -4.1595 12 6 5.2820 2.5322 -5.4429 13 6 6.5724 2.1654 -5.7814 14 7 7.3702 1.5912 -4.9016 15 6 6.9828 1.3469 -3.6669 16 6 7.9369 0.6944 -2.6999 17 9 8.1426 1.5407 -1.6050 18 9 7.3961 -0.5176 -2.2573 19 6 3.9792 2.6198 0.8498 20 6 2.9122 2.4916 1.9656 21 7 1.6763 2.1015 1.2630 22 6 0.4009 2.3125 1.7146 23 1 0.1613 2.1437 2.7541 24 6 -0.5840 2.7434 0.8364 25 7 -1.8517 2.6712 1.1826 26 14 -0.1100 3.4258 -0.8366 27 1 -0.0756 2.3222 -1.8296 28 1 1.2314 4.0573 -0.7518 29 1 -1.1089 4.4403 -1.2584 30 1 -0.3633 0.6205 -0.8193 31 1 -0.3634 -1.0197 -0.1278 32 1 -0.3633 0.3992 0.9469 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.4039 2.1593 -2.0937 36 1 3.8217 2.5678 -3.8682 37 1 4.6387 3.0011 -6.1728 38 1 6.9323 2.3522 -6.7824 39 1 8.8881 0.5074 -3.1983 40 1 3.9008 3.5816 0.3429 41 1 4.9823 2.4713 1.2495 42 1 2.7755 3.4476 2.4712 43 1 3.2016 1.7214 2.6805 44 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087652556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = -61.189746 kcal Electronic energy + Delta-G solvation = -30909.497050 eV Core-core repulsion = 26498.846362 eV Total energy + Delta-G solvation = -4410.650688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.82421 -46.80268 -41.00330 -39.50430 -37.94376 -34.49810 -33.34395 -32.63434 -32.31781 -31.91647 -29.42980 -27.41573 -26.72601 -25.08116 -24.28706 -22.75634 -21.76917 -21.16796 -20.61194 -19.72271 -18.41746 -17.76364 -17.47842 -17.12305 -16.86226 -16.38712 -15.91859 -15.50627 -15.26025 -15.10079 -14.71310 -14.38971 -14.00709 -13.58988 -13.55968 -13.40512 -13.37109 -13.17713 -13.11151 -12.91778 -12.39828 -12.35157 -12.04354 -11.89320 -11.45728 -11.38377 -11.25029 -10.98297 -10.63132 -10.51224 -10.47158 -10.33307 -10.17397 -10.10152 -9.79092 -9.76398 -9.73543 -9.52401 -8.85159 -8.42937 -6.79101 -6.09322 -3.55838 0.10961 0.55242 2.63373 2.99314 3.11882 3.17101 3.32169 3.36076 3.36756 3.95258 4.12384 4.22145 4.29562 4.40890 4.50160 4.75401 4.85015 4.95303 5.01676 5.04231 5.08836 5.26046 5.32523 5.38257 5.49837 5.58198 5.83054 5.91575 5.93065 5.99573 6.16179 6.21734 6.35341 6.44415 6.62128 6.67074 6.73715 6.80514 6.85152 7.10684 7.20479 7.45915 7.64304 7.93626 8.13547 8.27509 8.78331 9.56298 10.18738 11.05457 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.003790 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.647120 B = 7386.584895 C = 8199.475549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.145 3.855 4 H 0.035 0.965 5 C 0.136 3.864 6 H 0.101 0.899 7 N -0.709 5.709 8 C 0.551 3.449 9 O -0.505 6.505 10 C -0.143 4.143 11 C -0.047 4.047 12 C -0.157 4.157 13 C 0.119 3.881 14 N -0.463 5.463 15 C 0.100 3.900 16 C 0.338 3.662 17 F -0.181 7.181 18 F -0.181 7.181 19 C -0.144 4.144 20 C 0.130 3.870 21 N -0.599 5.599 22 C -0.247 4.247 23 H 0.082 0.918 24 C 0.049 3.951 25 N -0.898 5.898 26 Si 0.878 3.122 27 H -0.280 1.280 28 H -0.271 1.271 29 H -0.302 1.302 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.107 0.893 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -0.833 -14.581 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.119 0.881 7 N -0.360 5.360 8 C 0.335 3.665 9 O -0.381 6.381 10 C -0.148 4.148 11 C -0.073 4.073 12 C -0.176 4.176 13 C -0.039 4.039 14 N -0.171 5.171 15 C -0.040 4.040 16 C 0.283 3.717 17 F -0.162 7.162 18 F -0.162 7.162 19 C -0.184 4.184 20 C 0.005 3.995 21 N -0.326 5.326 22 C -0.375 4.375 23 H 0.100 0.900 24 C -0.152 4.152 25 N -0.539 5.539 26 Si 0.709 3.291 27 H -0.207 1.207 28 H -0.197 1.197 29 H -0.230 1.230 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.098 -1.414 -14.186 22.261 hybrid contribution -1.283 0.955 -1.278 2.047 sum 15.815 -0.459 -15.464 22.124 Atomic orbital electron populations 1.22102 0.94672 0.98857 1.05838 1.21823 0.97751 0.96429 0.99765 1.21405 0.89761 0.93253 0.91763 0.94820 1.22159 0.95481 0.99495 0.79708 0.88132 1.45922 1.13703 1.61914 1.14426 1.17893 0.82589 0.79633 0.86339 1.90886 1.52198 1.41216 1.53789 1.20954 0.95603 1.02149 0.96130 1.21915 0.99597 0.92973 0.92840 1.22285 0.97701 1.00586 0.97052 1.23001 0.90071 0.92030 0.98763 1.67342 1.36758 1.11857 1.01162 1.21902 0.92590 0.96824 0.92706 1.19791 0.94770 0.75601 0.81491 1.93058 1.95424 1.71307 1.56449 1.93057 1.88194 1.44543 1.90425 1.23175 0.99435 0.97908 0.97861 1.21784 0.85950 0.98236 0.93574 1.44539 1.01973 1.65791 1.20293 1.18390 0.82200 1.40302 0.96559 0.90012 1.25504 0.95153 0.96562 0.98020 1.69776 0.99103 1.48145 1.36882 0.87003 0.77790 0.78771 0.85521 1.20727 1.19684 1.23017 0.94038 0.95539 0.87428 0.94291 0.92235 0.76981 0.83628 0.83233 0.81280 0.86082 0.91512 0.91018 0.92830 0.95142 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.30 37.16 0.31 -3.12 16 2 C -0.12 -2.34 5.46 -26.73 -0.15 -2.48 16 3 C 0.14 2.92 2.16 -66.95 -0.14 2.78 16 4 H 0.03 0.73 3.34 -51.93 -0.17 0.56 16 5 C 0.14 2.39 2.76 -66.10 -0.18 2.21 16 6 H 0.10 1.83 7.40 -51.93 -0.38 1.45 16 7 N -0.71 -10.82 5.16 -52.97 -0.27 -11.09 16 8 C 0.55 8.49 7.58 -12.34 -0.09 8.40 16 9 O -0.51 -9.12 11.07 5.32 0.06 -9.06 16 10 C -0.14 -1.81 5.85 -104.82 -0.61 -2.42 16 11 C -0.05 -0.44 9.65 -38.87 -0.37 -0.82 16 12 C -0.16 -1.10 10.10 -39.49 -0.40 -1.50 16 13 C 0.12 0.89 11.17 -17.47 -0.20 0.69 16 14 N -0.46 -4.85 10.24 -9.14 -0.09 -4.95 16 15 C 0.10 1.24 6.31 -82.17 -0.52 0.72 16 16 C 0.34 4.31 5.02 36.01 0.18 4.49 16 17 F -0.18 -2.74 15.04 2.25 0.03 -2.70 16 18 F -0.18 -2.74 15.02 2.25 0.03 -2.71 16 19 C -0.14 -2.52 6.77 -24.58 -0.17 -2.69 16 20 C 0.13 2.54 7.23 -2.53 -0.02 2.52 16 21 N -0.60 -13.61 2.56 -162.57 -0.42 -14.02 16 22 C -0.25 -6.49 8.23 -15.06 -0.12 -6.61 16 23 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 24 C 0.05 1.32 3.61 -17.43 -0.06 1.26 16 25 N -0.90 -25.66 13.97 55.49 0.78 -24.89 16 26 Si 0.88 20.95 23.28 -169.99 -3.96 17.00 16 27 H -0.28 -6.37 6.09 56.52 0.34 -6.03 16 28 H -0.27 -6.32 7.10 56.52 0.40 -5.92 16 29 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 30 H 0.04 0.93 5.51 -51.93 -0.29 0.65 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 2.69 5.13 -51.93 -0.27 2.43 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.33 6.43 -40.82 -0.26 5.07 16 36 H 0.15 1.15 6.52 -52.49 -0.34 0.81 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.12 1.11 8.11 -51.93 -0.42 0.69 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -31.77 348.76 -6.69 -38.46 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.56 Total: 5.28 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.55 Total: 3.43 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.01 Total: -54.95 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.06 Total: -9.06 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.07 Total: -5.41 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -3.96 Total: 17.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.77 -6.69 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087652556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.728 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds