Wall clock time and date at job start Tue Mar 31 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21556 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.47834 * 120.00227 * 179.97438 * 8 7 5 11 11 C 1.40025 * 120.55918 * 359.97438 * 10 8 7 12 12 C 1.38356 * 118.28996 * 179.97438 * 11 10 8 13 13 C 1.38361 * 119.29971 * 359.97438 * 12 11 10 14 14 N 1.31922 * 121.08056 * 0.02780 * 13 12 11 15 15 C 1.31690 * 121.87696 * 359.67807 * 14 13 12 16 16 C 1.50709 * 119.71323 * 180.28724 * 15 14 13 17 17 F 1.39906 * 109.47047 * 120.29252 * 16 15 14 18 18 F 1.39898 * 109.47398 * 240.29030 * 16 15 14 19 19 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 20 20 C 1.54910 * 101.57974 * 35.30613 * 19 5 3 21 21 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 22 22 C 1.36937 * 125.64711 * 298.39400 * 21 3 2 23 23 H 1.08001 * 119.99698 * 137.66376 * 22 21 3 24 24 C 1.38811 * 120.00174 * 317.66370 * 22 21 3 25 25 N 1.31612 * 120.00077 * 165.29696 * 24 22 21 26 26 Si 1.86795 * 119.99943 * 345.29056 * 24 22 21 27 27 H 1.48500 * 109.46981 * 90.64905 * 26 24 22 28 28 H 1.48504 * 109.47384 * 330.65296 * 26 24 22 29 29 H 1.48495 * 109.47247 * 210.65317 * 26 24 22 30 30 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 31 31 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 32 32 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 33 33 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 34 34 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 35 35 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 36 36 H 1.08002 * 120.85467 * 359.95306 * 11 10 8 37 37 H 1.08000 * 120.35327 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.45511 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47205 * 0.29489 * 16 15 14 40 40 H 1.09004 * 111.00712 * 277.23419 * 19 5 3 41 41 H 1.08998 * 111.00975 * 153.37963 * 19 5 3 42 42 H 1.09004 * 110.36479 * 204.15215 * 20 19 5 43 43 H 1.08999 * 110.36730 * 81.83661 * 20 19 5 44 44 H 0.97006 * 120.00357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0212 0.8694 -1.0815 10 6 5.6945 1.6810 -3.2482 11 6 4.8244 2.2918 -4.1595 12 6 5.2820 2.5322 -5.4429 13 6 6.5724 2.1654 -5.7814 14 7 7.3702 1.5912 -4.9016 15 6 6.9828 1.3469 -3.6669 16 6 7.9369 0.6944 -2.6999 17 9 8.1426 1.5407 -1.6050 18 9 7.3961 -0.5176 -2.2573 19 6 3.9792 2.6198 0.8498 20 6 2.9122 2.4916 1.9656 21 7 1.6763 2.1015 1.2630 22 6 0.4009 2.3125 1.7146 23 1 0.1613 2.1437 2.7541 24 6 -0.5840 2.7434 0.8364 25 7 -1.8517 2.6712 1.1826 26 14 -0.1100 3.4258 -0.8366 27 1 -0.0756 2.3222 -1.8296 28 1 1.2314 4.0573 -0.7518 29 1 -1.1089 4.4403 -1.2584 30 1 -0.3633 0.6205 -0.8193 31 1 -0.3634 -1.0197 -0.1278 32 1 -0.3633 0.3992 0.9469 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.4039 2.1593 -2.0937 36 1 3.8217 2.5678 -3.8682 37 1 4.6387 3.0011 -6.1728 38 1 6.9323 2.3522 -6.7824 39 1 8.8881 0.5074 -3.1983 40 1 3.9008 3.5816 0.3429 41 1 4.9823 2.4713 1.2495 42 1 2.7755 3.4476 2.4712 43 1 3.2016 1.7214 2.6805 44 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087652556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:24 Heat of formation + Delta-G solvation = -82.944159 kcal Electronic energy + Delta-G solvation = -30910.440392 eV Core-core repulsion = 26498.846362 eV Total energy + Delta-G solvation = -4411.594030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.83993 -47.84575 -41.87174 -40.69206 -39.36603 -35.86614 -34.57730 -33.87070 -33.66825 -33.20816 -31.08662 -28.75895 -27.84256 -26.38693 -25.54255 -23.71504 -23.31783 -22.39772 -22.08213 -21.28442 -19.40153 -18.68316 -18.61657 -18.35970 -18.13530 -17.77768 -17.16676 -16.64055 -16.26451 -16.23050 -16.01381 -15.69192 -15.19886 -15.09613 -14.86584 -14.63982 -14.55237 -14.30489 -14.17973 -14.15529 -14.03131 -13.69494 -13.52875 -13.25183 -13.14932 -13.00051 -12.60857 -12.36053 -12.34565 -12.13758 -11.93032 -11.73239 -11.61783 -11.30010 -11.22668 -11.18494 -10.75099 -10.47066 -10.42341 -10.13248 -8.67282 -8.16473 -5.61645 -0.65171 -0.11206 1.26235 1.38222 1.48102 1.69609 1.84661 2.33780 2.42707 2.54973 3.08878 3.20859 3.25998 3.32753 3.48459 3.60924 3.67654 3.77711 3.82668 4.04780 4.06236 4.09870 4.21277 4.28328 4.31380 4.35186 4.46765 4.56718 4.70371 4.74870 4.85967 4.90545 4.97948 4.99871 5.06152 5.14787 5.23207 5.31026 5.36845 5.47958 5.78013 5.99240 6.20887 6.29991 6.54577 6.84270 7.00533 7.53602 8.22213 9.01968 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.003790 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.647120 B = 7386.584895 C = 8199.475549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.143 3.857 4 H 0.031 0.969 5 C 0.149 3.851 6 H 0.095 0.905 7 N -0.705 5.705 8 C 0.551 3.449 9 O -0.538 6.538 10 C -0.169 4.169 11 C -0.051 4.051 12 C -0.140 4.140 13 C 0.124 3.876 14 N -0.475 5.475 15 C 0.085 3.915 16 C 0.327 3.673 17 F -0.200 7.200 18 F -0.200 7.200 19 C -0.131 4.131 20 C 0.126 3.874 21 N -0.613 5.613 22 C -0.237 4.237 23 H 0.041 0.959 24 C 0.007 3.993 25 N -0.942 5.942 26 Si 0.929 3.071 27 H -0.260 1.260 28 H -0.259 1.259 29 H -0.311 1.311 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.191 0.809 38 H 0.211 0.789 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.614 -0.247 -18.414 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.048 0.952 5 C 0.043 3.957 6 H 0.113 0.887 7 N -0.356 5.356 8 C 0.338 3.662 9 O -0.416 6.416 10 C -0.174 4.174 11 C -0.077 4.077 12 C -0.159 4.159 13 C -0.033 4.033 14 N -0.184 5.184 15 C -0.055 4.055 16 C 0.273 3.727 17 F -0.181 7.181 18 F -0.181 7.181 19 C -0.170 4.170 20 C 0.001 3.999 21 N -0.340 5.340 22 C -0.366 4.366 23 H 0.058 0.942 24 C -0.191 4.191 25 N -0.585 5.585 26 Si 0.758 3.242 27 H -0.186 1.186 28 H -0.184 1.184 29 H -0.240 1.240 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.209 0.791 38 H 0.227 0.773 39 H 0.170 0.830 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.748 -0.833 -18.034 26.027 hybrid contribution -1.760 0.743 -0.102 1.913 sum 16.988 -0.090 -18.136 24.850 Atomic orbital electron populations 1.21945 0.96112 0.99531 1.03185 1.21799 0.96252 0.96516 1.00916 1.21449 0.91641 0.93063 0.90121 0.95166 1.21831 0.93303 0.99293 0.81246 0.88700 1.45758 1.14150 1.62199 1.13528 1.18324 0.81936 0.78575 0.87396 1.90867 1.52999 1.42654 1.55097 1.20778 0.96676 1.04886 0.95099 1.22198 0.99815 0.92278 0.93361 1.22755 0.97817 0.98787 0.96536 1.23804 0.90049 0.89834 0.99647 1.67391 1.37653 1.12698 1.00689 1.21775 0.92445 0.97792 0.93448 1.20284 0.96528 0.74764 0.81163 1.93006 1.95592 1.71849 1.57648 1.93004 1.88647 1.45737 1.90730 1.23060 0.99064 0.98036 0.96889 1.21864 0.85484 0.98193 0.94342 1.44593 1.01562 1.66524 1.21348 1.18102 0.83960 1.39555 0.95015 0.94156 1.25952 0.94704 0.96975 1.01420 1.69906 1.00220 1.49990 1.38408 0.86170 0.77590 0.78389 0.82032 1.18561 1.18362 1.24021 0.95042 0.93578 0.91230 0.91650 0.92480 0.75760 0.82132 0.79136 0.77263 0.82954 0.91249 0.89814 0.93164 0.94647 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 8.30 71.98 0.60 -5.86 16 2 C -0.12 -4.41 5.46 30.60 0.17 -4.24 16 3 C 0.14 5.58 2.16 45.34 0.10 5.68 16 4 H 0.03 1.24 3.34 -2.39 -0.01 1.23 16 5 C 0.15 4.98 2.76 46.18 0.13 5.10 16 6 H 0.10 3.34 7.40 -2.39 -0.02 3.32 16 7 N -0.70 -19.95 5.16 -439.79 -2.27 -22.22 16 8 C 0.55 16.21 7.58 86.78 0.66 16.87 16 9 O -0.54 -19.22 11.07 -3.89 -0.04 -19.26 16 10 C -0.17 -3.91 5.85 -20.00 -0.12 -4.03 16 11 C -0.05 -0.77 9.65 22.73 0.22 -0.55 16 12 C -0.14 -1.23 10.10 22.33 0.23 -1.01 16 13 C 0.12 1.27 11.17 84.71 0.95 2.21 16 14 N -0.48 -8.53 10.24 -182.83 -1.87 -10.40 16 15 C 0.09 1.95 6.31 42.89 0.27 2.22 16 16 C 0.33 8.11 5.02 71.24 0.36 8.47 16 17 F -0.20 -6.03 15.04 44.97 0.68 -5.35 16 18 F -0.20 -6.07 15.02 44.97 0.68 -5.39 16 19 C -0.13 -4.38 6.77 31.98 0.22 -4.16 16 20 C 0.13 4.88 7.23 86.86 0.63 5.51 16 21 N -0.61 -27.80 2.56 -668.25 -1.71 -29.52 16 22 C -0.24 -12.84 8.23 84.03 0.69 -12.15 16 23 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 24 C 0.01 0.41 3.61 84.86 0.31 0.71 16 25 N -0.94 -55.51 13.97 21.65 0.30 -55.21 16 26 Si 0.93 42.58 23.28 68.60 1.60 44.18 16 27 H -0.26 -10.95 6.09 99.48 0.61 -10.35 16 28 H -0.26 -11.24 7.10 99.48 0.71 -10.53 16 29 H -0.31 -14.70 7.11 99.48 0.71 -14.00 16 30 H 0.03 1.37 5.51 -2.39 -0.01 1.36 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 3.55 5.13 -2.39 -0.01 3.54 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 9.70 6.43 -92.70 -0.60 9.11 16 36 H 0.16 1.85 6.52 -2.91 -0.02 1.83 16 37 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.21 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.15 2.62 8.11 -2.39 -0.02 2.60 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.26 14.83 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -72.27 348.76 3.10 -69.16 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.36 Total: 19.22 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.39 Total: 14.78 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -5.55 Total: -117.35 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 1.35 Total: -10.74 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.60 Total: 44.18 kcal Total: -72.27 3.10 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087652556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.781 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds