Wall clock time and date at job start Wed Apr 1 2020 00:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44928 * 2 1 4 4 C 1.53045 * 109.46048 * 240.03289 * 2 1 3 5 5 C 1.53190 * 109.31158 * 178.61214 * 4 2 1 6 6 N 1.46930 * 108.77413 * 54.63457 * 5 4 2 7 7 C 1.34779 * 120.62875 * 126.41458 * 6 5 4 8 8 O 1.21542 * 120.00170 * 179.97438 * 7 6 5 9 9 C 1.47846 * 120.00113 * 359.97438 * 7 6 5 10 10 C 1.40129 * 120.96104 * 89.71938 * 9 7 6 11 11 F 1.35100 * 120.51822 * 0.02578 * 10 9 7 12 12 C 1.38432 * 118.95710 * 179.77580 * 10 9 7 13 13 N 1.31763 * 120.93374 * 0.51379 * 12 10 9 14 14 C 1.31774 * 122.14044 * 359.74147 * 13 12 10 15 15 C 1.38426 * 120.93072 * 359.97438 * 14 13 12 16 16 F 1.35095 * 120.52300 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.74128 * 306.38961 * 6 5 4 18 18 C 1.53042 * 109.45989 * 119.96291 * 2 1 3 19 19 H 1.08995 * 109.52656 * 61.42223 * 18 2 1 20 20 C 1.52993 * 109.50064 * 301.33696 * 18 2 1 21 21 N 1.46496 * 109.47551 * 175.16001 * 20 18 2 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09000 * 109.46939 * 300.03241 * 1 2 3 31 31 H 1.09000 * 109.47146 * 60.03888 * 1 2 3 32 32 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49739 * 58.66297 * 4 2 1 34 34 H 1.08995 * 109.52325 * 298.57714 * 4 2 1 35 35 H 1.08997 * 109.59086 * 294.84836 * 5 4 2 36 36 H 1.08997 * 109.70352 * 174.48824 * 5 4 2 37 37 H 1.08002 * 119.52954 * 180.26875 * 12 10 9 38 38 H 1.07998 * 119.53500 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.58492 * 293.81949 * 17 6 5 40 40 H 1.09003 * 109.70192 * 173.46504 * 17 6 5 41 41 H 1.09004 * 109.46862 * 55.16200 * 20 18 2 42 42 H 1.09004 * 109.46998 * 295.16677 * 20 18 2 43 43 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 44 44 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9622 -2.2571 0.0001 8 8 5.3656 -2.7116 1.0527 9 6 5.4525 -2.8104 -1.2803 10 6 6.5871 -2.2791 -1.9078 11 9 7.2583 -1.2466 -1.3521 12 6 7.0126 -2.8322 -3.1034 13 7 6.3612 -3.8359 -3.6552 14 6 5.2871 -4.3628 -3.1027 15 6 4.7927 -3.8777 -1.9042 16 9 3.6912 -4.4245 -1.3448 17 6 3.5714 -0.6885 1.2643 18 6 2.0399 -0.7207 1.2501 19 1 1.6979 -1.7556 1.2390 20 6 1.5028 -0.0188 2.4990 21 7 1.8950 -0.7749 3.6909 22 6 1.5250 -0.3346 4.9336 23 1 0.9436 0.5700 5.0349 24 6 1.8970 -1.0507 6.0630 25 7 1.5409 -0.6278 7.2574 26 14 2.9019 -2.6156 5.8875 27 1 1.9880 -3.7786 5.7553 28 1 3.7597 -2.5202 4.6791 29 1 3.7569 -2.7921 7.0888 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5132 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6572 -0.2208 -2.1399 34 1 1.6979 -1.7556 -1.2388 35 1 3.9143 0.3409 -1.3674 36 1 3.9438 -1.2830 -2.0985 37 1 7.8886 -2.4327 -3.5928 38 1 4.7855 -5.1846 -3.5919 39 1 3.9144 0.3410 1.3674 40 1 3.9417 -1.2824 2.1000 41 1 0.4155 0.0366 2.4454 42 1 1.9156 0.9885 2.5555 43 1 2.4174 -1.5871 3.5998 44 1 1.8006 -1.1284 8.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132851690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:21 Heat of formation + Delta-G solvation = -70.689821 kcal Electronic energy + Delta-G solvation = -30475.955659 eV Core-core repulsion = 26064.893017 eV Total energy + Delta-G solvation = -4411.062642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.65329 -49.62099 -40.99673 -40.00007 -38.20009 -35.29512 -33.96424 -33.10538 -31.96196 -31.37396 -30.31066 -28.52542 -26.47898 -25.22076 -24.16821 -23.45366 -23.00737 -21.22123 -20.70442 -19.69810 -18.73620 -18.69052 -18.09109 -17.45144 -17.08498 -16.48416 -16.30765 -16.02362 -15.93412 -15.23035 -14.95925 -14.73560 -14.49683 -14.29073 -14.13303 -14.07374 -13.78086 -13.64996 -13.52001 -13.19405 -12.91839 -12.62198 -12.58712 -12.09044 -11.91457 -11.79273 -11.32641 -11.09016 -10.97162 -10.89712 -10.70852 -10.45914 -10.39070 -10.24705 -10.07867 -9.93246 -9.59149 -9.54540 -8.92213 -8.79465 -7.20555 -5.74327 -3.10043 -0.00520 0.05449 2.06950 2.52420 2.72350 2.99973 3.37191 3.44015 3.50719 3.52936 3.63728 3.74252 4.04280 4.30854 4.43504 4.62638 4.63961 4.65704 4.80428 4.81814 4.93661 5.06024 5.09479 5.13286 5.40005 5.48520 5.52851 5.56523 5.62192 5.69404 5.75958 5.77850 5.79108 5.92691 6.03708 6.18089 6.24803 6.28793 6.33636 6.66905 6.72280 6.94125 7.04829 7.74239 8.00864 8.44602 9.23398 9.96346 10.15179 11.43877 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003657 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.577665 B = 7655.489740 C = 8581.673860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.594 5.594 7 C 0.560 3.440 8 O -0.506 6.506 9 C -0.145 4.145 10 C 0.110 3.890 11 F -0.109 7.109 12 C 0.068 3.932 13 N -0.419 5.419 14 C 0.069 3.931 15 C 0.112 3.888 16 F -0.107 7.107 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.076 0.924 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.273 1.273 29 H -0.290 1.290 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.038 0.962 42 H 0.028 0.972 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -2.431 -28.847 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.327 5.327 7 C 0.344 3.656 8 O -0.380 6.380 9 C -0.158 4.158 10 C 0.088 3.912 11 F -0.087 7.087 12 C -0.090 4.090 13 N -0.126 5.126 14 C -0.090 4.090 15 C 0.089 3.911 16 F -0.085 7.085 17 C -0.004 4.004 18 C -0.126 4.126 19 H 0.094 0.906 20 C 0.036 3.964 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.199 1.199 29 H -0.216 1.216 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.110 -2.839 -28.808 29.808 hybrid contribution 0.358 -0.737 1.052 1.334 sum 7.468 -3.576 -27.756 28.964 Atomic orbital electron populations 1.21883 0.94516 1.02119 1.02039 1.21083 0.96347 0.99444 0.93380 0.90666 1.21989 0.93779 1.01953 0.98918 1.21801 0.95431 0.99433 0.85032 1.48125 1.41769 1.34095 1.08678 1.17699 0.80126 0.80397 0.87386 1.90907 1.56870 1.59021 1.31225 1.20690 0.97847 0.99111 0.98160 1.18645 0.91221 0.87853 0.93498 1.91624 1.78025 1.54457 1.84576 1.23038 1.00788 0.93586 0.91617 1.67664 1.05574 1.07855 1.31520 1.23046 0.93819 1.00577 0.91565 1.18655 0.85771 0.93249 0.93430 1.91636 1.48992 1.83513 1.84394 1.21885 0.94135 0.99587 0.84760 1.21797 0.93951 1.01090 0.95794 0.90601 1.20704 0.97503 0.94091 0.84117 1.42779 1.65956 1.28985 1.02590 1.19026 1.28488 1.08121 0.81830 0.89184 1.24642 1.00491 0.98631 0.95110 1.69703 1.50818 1.40658 0.97021 0.86636 0.80631 0.84636 0.77260 1.21079 1.19903 1.21638 0.91339 0.93002 0.92696 0.90364 0.91263 0.90480 0.90947 0.79924 0.79906 0.90510 0.88123 0.94451 0.95415 0.80572 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.81 37.16 0.33 -1.25 16 2 C -0.08 -0.92 2.23 -90.57 -0.20 -1.12 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.15 5.36 -26.61 -0.14 -1.30 16 5 C 0.11 1.00 6.34 -3.71 -0.02 0.98 16 6 N -0.59 -8.02 2.97 -173.88 -0.52 -8.53 16 7 C 0.56 8.56 6.62 -12.33 -0.08 8.48 16 8 O -0.51 -10.09 16.52 5.33 0.09 -10.00 16 9 C -0.15 -1.68 3.67 -104.55 -0.38 -2.06 16 10 C 0.11 1.05 7.34 -38.80 -0.28 0.77 16 11 F -0.11 -1.16 16.92 2.25 0.04 -1.12 16 12 C 0.07 0.48 11.16 -17.51 -0.20 0.28 16 13 N -0.42 -3.19 10.33 -13.18 -0.14 -3.33 16 14 C 0.07 0.49 11.16 -17.51 -0.20 0.30 16 15 C 0.11 1.09 7.21 -38.80 -0.28 0.82 16 16 F -0.11 -1.21 16.91 2.25 0.04 -1.18 16 17 C 0.12 1.84 5.51 -3.71 -0.02 1.82 16 18 C -0.11 -1.60 1.92 -90.50 -0.17 -1.77 16 19 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 20 C 0.16 3.06 5.41 -4.05 -0.02 3.03 16 21 N -0.76 -18.28 5.18 -59.91 -0.31 -18.59 16 22 C -0.24 -7.05 10.47 -15.06 -0.16 -7.20 16 23 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 26 Si 0.88 23.30 27.74 -169.99 -4.71 18.59 16 27 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.27 -7.08 6.52 56.52 0.37 -6.71 16 29 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 30 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 6.23 -51.93 -0.32 0.26 16 37 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.10 1.97 6.21 -51.93 -0.32 1.64 16 41 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.36 8.81 4.75 -40.82 -0.19 8.62 16 44 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -35.48 365.38 -6.89 -42.37 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.73 Total: 3.57 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.93 Total: 1.89 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.19 Total: -59.63 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.48 -6.89 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.322 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds