Wall clock time and date at job start Wed Apr 1 2020 00:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44928 * 2 1 4 4 C 1.53045 * 109.46048 * 240.03289 * 2 1 3 5 5 C 1.53190 * 109.31158 * 178.61214 * 4 2 1 6 6 N 1.46930 * 108.77413 * 54.63457 * 5 4 2 7 7 C 1.34779 * 120.62875 * 126.41458 * 6 5 4 8 8 O 1.21542 * 120.00170 * 179.97438 * 7 6 5 9 9 C 1.47846 * 120.00113 * 359.97438 * 7 6 5 10 10 C 1.40129 * 120.96104 * 89.71938 * 9 7 6 11 11 F 1.35100 * 120.51822 * 0.02578 * 10 9 7 12 12 C 1.38432 * 118.95710 * 179.77580 * 10 9 7 13 13 N 1.31763 * 120.93374 * 0.51379 * 12 10 9 14 14 C 1.31774 * 122.14044 * 359.74147 * 13 12 10 15 15 C 1.38426 * 120.93072 * 359.97438 * 14 13 12 16 16 F 1.35095 * 120.52300 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.74128 * 306.38961 * 6 5 4 18 18 C 1.53042 * 109.45989 * 119.96291 * 2 1 3 19 19 H 1.08995 * 109.52656 * 61.42223 * 18 2 1 20 20 C 1.52993 * 109.50064 * 301.33696 * 18 2 1 21 21 N 1.46496 * 109.47551 * 175.16001 * 20 18 2 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09000 * 109.46939 * 300.03241 * 1 2 3 31 31 H 1.09000 * 109.47146 * 60.03888 * 1 2 3 32 32 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49739 * 58.66297 * 4 2 1 34 34 H 1.08995 * 109.52325 * 298.57714 * 4 2 1 35 35 H 1.08997 * 109.59086 * 294.84836 * 5 4 2 36 36 H 1.08997 * 109.70352 * 174.48824 * 5 4 2 37 37 H 1.08002 * 119.52954 * 180.26875 * 12 10 9 38 38 H 1.07998 * 119.53500 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.58492 * 293.81949 * 17 6 5 40 40 H 1.09003 * 109.70192 * 173.46504 * 17 6 5 41 41 H 1.09004 * 109.46862 * 55.16200 * 20 18 2 42 42 H 1.09004 * 109.46998 * 295.16677 * 20 18 2 43 43 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 44 44 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9622 -2.2571 0.0001 8 8 5.3656 -2.7116 1.0527 9 6 5.4525 -2.8104 -1.2803 10 6 6.5871 -2.2791 -1.9078 11 9 7.2583 -1.2466 -1.3521 12 6 7.0126 -2.8322 -3.1034 13 7 6.3612 -3.8359 -3.6552 14 6 5.2871 -4.3628 -3.1027 15 6 4.7927 -3.8777 -1.9042 16 9 3.6912 -4.4245 -1.3448 17 6 3.5714 -0.6885 1.2643 18 6 2.0399 -0.7207 1.2501 19 1 1.6979 -1.7556 1.2390 20 6 1.5028 -0.0188 2.4990 21 7 1.8950 -0.7749 3.6909 22 6 1.5250 -0.3346 4.9336 23 1 0.9436 0.5700 5.0349 24 6 1.8970 -1.0507 6.0630 25 7 1.5409 -0.6278 7.2574 26 14 2.9019 -2.6156 5.8875 27 1 1.9880 -3.7786 5.7553 28 1 3.7597 -2.5202 4.6791 29 1 3.7569 -2.7921 7.0888 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5132 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6572 -0.2208 -2.1399 34 1 1.6979 -1.7556 -1.2388 35 1 3.9143 0.3409 -1.3674 36 1 3.9438 -1.2830 -2.0985 37 1 7.8886 -2.4327 -3.5928 38 1 4.7855 -5.1846 -3.5919 39 1 3.9144 0.3410 1.3674 40 1 3.9417 -1.2824 2.1000 41 1 0.4155 0.0366 2.4454 42 1 1.9156 0.9885 2.5555 43 1 2.4174 -1.5871 3.5998 44 1 1.8006 -1.1284 8.0466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132851690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:20 Heat of formation + Delta-G solvation = -95.066391 kcal Electronic energy + Delta-G solvation = -30477.012706 eV Core-core repulsion = 26064.893017 eV Total energy + Delta-G solvation = -4412.119689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.40840 -50.38462 -41.92819 -40.83711 -39.37791 -36.88861 -35.32972 -33.92588 -33.71556 -31.99572 -31.91449 -29.50182 -27.89800 -26.25519 -24.82455 -24.71293 -24.33055 -22.66022 -21.80938 -20.75447 -19.72722 -19.45736 -19.40031 -18.87349 -18.01061 -17.23539 -17.22156 -16.83616 -16.77667 -16.70131 -16.30172 -15.99259 -15.70068 -15.49453 -15.14938 -14.96132 -14.88809 -14.72819 -14.45130 -14.41415 -14.29164 -14.23422 -13.47794 -13.38526 -13.29586 -12.92094 -12.75375 -12.72354 -12.33298 -12.11522 -11.99589 -11.90476 -11.80258 -11.39060 -11.33532 -11.18252 -11.04638 -10.90544 -10.21297 -9.96553 -9.33549 -8.09699 -5.41179 -0.74793 -0.56028 0.96412 1.28820 1.32345 1.38300 1.51944 2.08894 2.30417 2.39404 2.69896 2.81273 3.13265 3.22497 3.38780 3.43432 3.62594 3.64539 3.71573 3.86281 3.89967 4.09946 4.15770 4.18783 4.25910 4.39927 4.48023 4.56612 4.61945 4.66322 4.71619 4.84059 4.86963 4.99644 5.05443 5.11506 5.15556 5.18427 5.26395 5.42890 5.51699 5.70874 5.97886 6.15586 6.34234 6.62525 7.01228 7.78697 7.94796 9.11956 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003657 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.577665 B = 7655.489740 C = 8581.673860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.120 4.120 5 C 0.099 3.901 6 N -0.590 5.590 7 C 0.552 3.448 8 O -0.569 6.569 9 C -0.160 4.160 10 C 0.100 3.900 11 F -0.119 7.119 12 C 0.093 3.907 13 N -0.422 5.422 14 C 0.092 3.908 15 C 0.098 3.902 16 F -0.121 7.121 17 C 0.120 3.880 18 C -0.093 4.093 19 H 0.059 0.941 20 C 0.159 3.841 21 N -0.763 5.763 22 C -0.228 4.228 23 H 0.067 0.933 24 C -0.054 4.054 25 N -0.979 5.979 26 Si 0.940 3.060 27 H -0.278 1.278 28 H -0.271 1.271 29 H -0.291 1.291 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.219 0.781 38 H 0.217 0.783 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -2.696 -33.483 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.158 4.158 5 C -0.022 4.022 6 N -0.320 5.320 7 C 0.338 3.662 8 O -0.449 6.449 9 C -0.173 4.173 10 C 0.078 3.922 11 F -0.098 7.098 12 C -0.065 4.065 13 N -0.128 5.128 14 C -0.066 4.066 15 C 0.075 3.925 16 F -0.100 7.100 17 C -0.002 4.002 18 C -0.113 4.113 19 H 0.078 0.922 20 C 0.033 3.967 21 N -0.408 5.408 22 C -0.359 4.359 23 H 0.085 0.915 24 C -0.246 4.246 25 N -0.630 5.630 26 Si 0.769 3.231 27 H -0.204 1.204 28 H -0.196 1.196 29 H -0.218 1.218 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.235 0.765 38 H 0.234 0.766 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.192 0.808 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.628 -3.077 -33.538 34.532 hybrid contribution 0.162 -0.566 2.394 2.466 sum 7.790 -3.644 -31.143 32.309 Atomic orbital electron populations 1.21858 0.93928 1.01912 1.02617 1.21087 0.96735 0.99804 0.92049 0.89284 1.21970 0.93129 1.01631 0.99047 1.22163 0.95866 1.00673 0.83455 1.48233 1.40998 1.33470 1.09325 1.18330 0.79641 0.80069 0.88116 1.90860 1.59139 1.61059 1.33800 1.20539 0.99345 1.00454 0.96963 1.18817 0.90860 0.88185 0.94370 1.91597 1.78186 1.55027 1.84961 1.23560 1.00770 0.92197 0.89995 1.67838 1.05665 1.07984 1.31357 1.23531 0.92957 1.00144 0.89944 1.18854 0.85885 0.93327 0.94420 1.91600 1.49773 1.83744 1.84847 1.21644 0.94574 0.99138 0.84894 1.21654 0.93283 1.00254 0.96108 0.92242 1.20927 0.97899 0.94024 0.83812 1.42890 1.65784 1.29400 1.02766 1.19079 1.26497 1.06688 0.83669 0.91521 1.25297 1.02467 1.01866 0.94957 1.69839 1.52986 1.42351 0.97777 0.85640 0.79225 0.81290 0.76976 1.20379 1.19621 1.21765 0.93044 0.90131 0.93316 0.86592 0.92092 0.88412 0.89052 0.76456 0.76632 0.89701 0.92567 0.93887 0.94995 0.80752 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.81 71.98 0.63 -2.11 16 2 C -0.08 -1.53 2.23 -10.76 -0.02 -1.55 16 3 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -1.75 5.36 30.67 0.16 -1.58 16 5 C 0.10 1.60 6.34 86.36 0.55 2.15 16 6 N -0.59 -15.71 2.97 -822.31 -2.44 -18.15 16 7 C 0.55 17.22 6.62 86.79 0.57 17.80 16 8 O -0.57 -24.04 16.52 -3.85 -0.06 -24.10 16 9 C -0.16 -3.55 3.67 -19.81 -0.07 -3.62 16 10 C 0.10 1.72 7.34 22.78 0.17 1.88 16 11 F -0.12 -2.41 16.92 44.97 0.76 -1.65 16 12 C 0.09 0.97 11.16 84.75 0.95 1.92 16 13 N -0.42 -4.75 10.33 -195.62 -2.02 -6.77 16 14 C 0.09 1.01 11.16 84.75 0.95 1.96 16 15 C 0.10 1.75 7.21 22.77 0.16 1.91 16 16 F -0.12 -2.66 16.91 44.97 0.76 -1.89 16 17 C 0.12 3.83 5.51 86.36 0.48 4.31 16 18 C -0.09 -2.77 1.92 -10.72 -0.02 -2.79 16 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 20 C 0.16 6.01 5.41 86.38 0.47 6.48 16 21 N -0.76 -37.69 5.18 -343.47 -1.78 -39.47 16 22 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 23 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 24 C -0.05 -3.33 5.50 84.86 0.47 -2.86 16 25 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 26 Si 0.94 49.84 27.74 68.60 1.90 51.74 16 27 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -14.08 6.52 99.48 0.65 -13.43 16 29 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 30 H 0.05 1.14 6.30 -2.39 -0.02 1.13 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.19 6.23 -2.39 -0.01 1.17 16 37 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.32 6.21 -2.39 -0.01 2.31 16 41 H 0.04 1.61 6.15 -2.38 -0.01 1.59 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.36 18.02 4.75 -92.71 -0.44 17.58 16 44 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -82.04 365.38 4.28 -77.76 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.55 Total: 15.59 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.32 Total: 11.27 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.94 Total: -128.71 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.52 Total: -3.55 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.74 kcal Total: -82.04 4.28 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.306 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds