Wall clock time and date at job start Wed Apr 1 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.45651 * 2 1 4 4 C 1.53042 * 109.45747 * 240.03504 * 2 1 3 5 5 C 1.53195 * 109.31098 * 301.35418 * 4 2 1 6 6 N 1.46923 * 108.77463 * 305.36564 * 5 4 2 7 7 C 1.34777 * 120.63041 * 233.58503 * 6 5 4 8 8 O 1.21558 * 119.99771 * 180.02562 * 7 6 5 9 9 C 1.47853 * 120.00337 * 0.02562 * 7 6 5 10 10 C 1.40121 * 120.95964 * 270.00348 * 9 7 6 11 11 F 1.35103 * 120.51765 * 359.97438 * 10 9 7 12 12 C 1.38429 * 118.95762 * 180.02562 * 10 9 7 13 13 N 1.31764 * 120.92970 * 0.28068 * 12 10 9 14 14 C 1.31766 * 122.13998 * 359.42049 * 13 12 10 15 15 C 1.38433 * 120.93412 * 0.57622 * 14 13 12 16 16 F 1.35098 * 120.52323 * 179.69723 * 15 14 13 17 17 C 1.46932 * 118.73767 * 53.86250 * 6 5 4 18 18 C 1.53035 * 109.45515 * 119.97053 * 2 1 3 19 19 H 1.08993 * 109.50196 * 178.63052 * 18 2 1 20 20 C 1.53004 * 109.49610 * 298.69852 * 18 2 1 21 21 N 1.46501 * 109.47170 * 184.99372 * 20 18 2 22 22 C 1.36936 * 120.00188 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99411 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00151 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00061 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 119.99922 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47296 * 90.00103 * 26 24 22 28 28 H 1.48498 * 109.47202 * 209.99723 * 26 24 22 29 29 H 1.48491 * 109.47418 * 330.00061 * 26 24 22 30 30 H 1.09001 * 109.46502 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46864 * 299.96664 * 1 2 3 32 32 H 1.08998 * 109.47201 * 59.97128 * 1 2 3 33 33 H 1.09006 * 109.49509 * 181.40732 * 4 2 1 34 34 H 1.08995 * 109.53007 * 61.32401 * 4 2 1 35 35 H 1.09004 * 109.58686 * 185.58177 * 5 4 2 36 36 H 1.08990 * 109.70357 * 65.22527 * 5 4 2 37 37 H 1.08002 * 119.53131 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.53652 * 180.27374 * 14 13 12 39 39 H 1.08997 * 109.58463 * 65.92596 * 17 6 5 40 40 H 1.09002 * 109.58344 * 186.34832 * 17 6 5 41 41 H 1.08994 * 109.47312 * 304.99693 * 20 18 2 42 42 H 1.09003 * 109.47078 * 64.99599 * 20 18 2 43 43 H 0.97000 * 119.99758 * 0.02562 * 21 20 18 44 44 H 0.97002 * 120.00491 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4993 -2.1541 -1.2644 6 7 1.8621 -2.8089 -0.0002 7 6 2.5150 -3.9880 -0.0002 8 8 2.8091 -4.5198 1.0526 9 6 2.8734 -4.6346 -1.2806 10 6 1.9970 -5.5318 -1.9052 11 9 0.8023 -5.8251 -1.3466 12 6 2.3749 -6.1138 -3.1030 13 7 3.5409 -5.8386 -3.6516 14 6 4.3929 -4.9971 -3.1020 15 6 4.0996 -4.3681 -1.9041 16 9 4.9820 -3.5114 -1.3449 17 6 1.4942 -2.1569 1.2641 18 6 2.0397 -0.7208 1.2500 19 1 3.1294 -0.7426 1.2386 20 6 1.5568 0.0194 2.4990 21 7 2.1420 -0.6001 3.6906 22 6 1.8514 -0.1034 4.9332 23 1 1.1904 0.7447 5.0347 24 6 2.4063 -0.6900 6.0623 25 7 2.1266 -0.2130 7.2567 26 14 3.5490 -2.1572 5.8867 27 1 4.9490 -1.6809 5.7504 28 1 3.4348 -3.0204 7.0896 29 1 3.1718 -2.9369 4.6805 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1296 -0.7430 -1.2382 34 1 1.6964 -0.1936 -2.1402 35 1 1.9379 -2.7018 -2.0986 36 1 0.4145 -2.1367 -1.3687 37 1 1.7067 -6.8071 -3.5922 38 1 5.3356 -4.7988 -3.5904 39 1 0.4088 -2.1375 1.3629 40 1 1.9294 -2.7065 2.0988 41 1 1.8642 1.0636 2.4441 42 1 0.4697 -0.0368 2.5570 43 1 2.7359 -1.3615 3.5994 44 1 2.5147 -0.6226 8.0457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132851691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:26 Heat of formation + Delta-G solvation = -67.605213 kcal Electronic energy + Delta-G solvation = -30624.046598 eV Core-core repulsion = 26213.117714 eV Total energy + Delta-G solvation = -4410.928883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.65108 -49.61822 -41.03926 -40.08678 -38.30328 -35.25112 -33.86033 -33.00162 -31.96142 -31.37212 -30.32005 -27.94636 -26.64547 -25.35028 -24.40945 -24.16492 -22.98331 -21.23870 -20.75185 -18.95503 -18.72848 -18.57682 -17.87265 -17.42744 -17.09706 -16.47950 -16.34173 -16.00825 -15.93046 -15.27441 -15.19068 -15.02072 -14.63032 -14.29109 -14.20526 -13.96928 -13.78694 -13.69623 -13.52096 -13.19373 -12.73884 -12.64631 -12.60128 -12.19468 -11.84397 -11.58716 -11.30003 -11.18475 -10.91553 -10.90438 -10.74498 -10.46576 -10.39761 -10.26690 -10.06805 -9.94154 -9.58969 -9.54691 -8.88931 -8.76701 -7.20950 -5.74337 -3.10096 -0.00201 0.05616 2.07345 2.53038 2.72394 3.00340 3.37389 3.44024 3.50775 3.53002 3.64044 3.74657 4.04495 4.31099 4.44265 4.62716 4.64107 4.68212 4.81296 4.82635 4.95474 5.05175 5.09527 5.11171 5.32958 5.45190 5.52306 5.54533 5.60722 5.68398 5.72130 5.77976 5.81522 5.89938 6.12703 6.15341 6.19463 6.28870 6.35688 6.62187 6.73238 6.94333 7.05594 7.74806 8.00834 8.44550 9.23359 9.96310 10.15156 11.43866 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.003670 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.312583 B = 7628.046286 C = 8491.044561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.105 3.895 6 N -0.593 5.593 7 C 0.559 3.441 8 O -0.506 6.506 9 C -0.145 4.145 10 C 0.110 3.890 11 F -0.109 7.109 12 C 0.068 3.932 13 N -0.419 5.419 14 C 0.069 3.931 15 C 0.111 3.889 16 F -0.107 7.107 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.075 0.925 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -7.548 -28.847 29.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.166 4.166 5 C -0.018 4.018 6 N -0.326 5.326 7 C 0.344 3.656 8 O -0.381 6.381 9 C -0.158 4.158 10 C 0.088 3.912 11 F -0.087 7.087 12 C -0.090 4.090 13 N -0.126 5.126 14 C -0.090 4.090 15 C 0.089 3.911 16 F -0.085 7.085 17 C -0.004 4.004 18 C -0.126 4.126 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.283 -8.065 -28.804 29.913 hybrid contribution 0.610 -0.544 1.050 1.331 sum 0.327 -8.609 -27.754 29.060 Atomic orbital electron populations 1.22009 0.94936 1.02019 1.02219 1.21068 0.96238 0.99600 0.93386 0.90263 1.21947 1.01320 0.94438 0.98929 1.21823 1.00908 0.94071 0.84998 1.48114 1.55798 1.19984 1.08682 1.17706 0.78989 0.81575 0.87379 1.90911 1.52839 1.63100 1.31213 1.20685 0.95469 1.01423 0.98214 1.18641 0.82401 0.96714 0.93458 1.91624 1.41355 1.91259 1.84450 1.23036 0.94647 0.99743 0.91616 1.67660 1.01707 1.11699 1.31549 1.23046 1.00730 0.93630 0.91607 1.18654 0.86980 0.92055 0.93418 1.91637 1.65894 1.66621 1.84383 1.22001 1.00611 0.93077 0.84700 1.21846 1.00999 0.94018 0.95769 0.90616 1.20663 0.96421 0.95005 0.84157 1.42783 1.57535 1.37396 1.02610 1.19027 1.24355 1.12256 0.81847 0.89184 1.24641 1.00143 0.98977 0.95111 1.69698 1.48225 1.43231 0.97038 0.86635 0.81553 0.83708 0.77264 1.21083 1.21635 1.19894 0.92527 0.91426 0.92873 0.91301 0.90370 0.91071 0.90240 0.79931 0.79912 0.90249 0.88232 0.95066 0.95000 0.80563 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.12 37.16 0.30 -1.26 16 2 C -0.08 -0.92 2.71 -90.58 -0.25 -1.17 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.15 5.63 -26.61 -0.15 -1.30 16 5 C 0.10 0.99 5.86 -3.71 -0.02 0.97 16 6 N -0.59 -7.98 2.97 -173.61 -0.51 -8.50 16 7 C 0.56 8.54 6.62 -12.33 -0.08 8.46 16 8 O -0.51 -10.08 16.52 5.31 0.09 -10.00 16 9 C -0.15 -1.67 3.67 -104.55 -0.38 -2.06 16 10 C 0.11 1.05 7.34 -38.80 -0.28 0.77 16 11 F -0.11 -1.16 16.92 2.25 0.04 -1.12 16 12 C 0.07 0.48 11.16 -17.51 -0.20 0.28 16 13 N -0.42 -3.20 10.32 -13.18 -0.14 -3.33 16 14 C 0.07 0.49 11.16 -17.51 -0.20 0.30 16 15 C 0.11 1.10 7.20 -38.80 -0.28 0.82 16 16 F -0.11 -1.21 16.92 2.25 0.04 -1.18 16 17 C 0.12 1.83 5.07 -3.48 -0.02 1.81 16 18 C -0.11 -1.60 2.16 -90.28 -0.20 -1.79 16 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.17 3.09 5.18 -4.04 -0.02 3.07 16 21 N -0.76 -18.30 5.18 -59.91 -0.31 -18.61 16 22 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 23 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 24 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 26 Si 0.88 23.31 27.73 -169.99 -4.71 18.59 16 27 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 29 H -0.27 -7.07 6.52 56.52 0.37 -6.70 16 30 H 0.06 0.57 4.97 -51.93 -0.26 0.31 16 31 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 6.23 -51.93 -0.32 0.26 16 36 H 0.08 0.67 6.70 -51.93 -0.35 0.32 16 37 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.08 1.17 6.68 -51.93 -0.35 0.83 16 40 H 0.10 1.95 6.23 -51.93 -0.32 1.62 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 43 H 0.36 8.82 4.78 -40.82 -0.20 8.62 16 44 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -35.48 359.36 -6.80 -42.28 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.46 Total: 3.81 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.02 Total: 1.81 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.19 Total: -59.62 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.48 -6.80 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.324 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds