Wall clock time and date at job start Wed Apr 1 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.45651 * 2 1 4 4 C 1.53042 * 109.45747 * 240.03504 * 2 1 3 5 5 C 1.53195 * 109.31098 * 301.35418 * 4 2 1 6 6 N 1.46923 * 108.77463 * 305.36564 * 5 4 2 7 7 C 1.34777 * 120.63041 * 233.58503 * 6 5 4 8 8 O 1.21558 * 119.99771 * 180.02562 * 7 6 5 9 9 C 1.47853 * 120.00337 * 0.02562 * 7 6 5 10 10 C 1.40121 * 120.95964 * 270.00348 * 9 7 6 11 11 F 1.35103 * 120.51765 * 359.97438 * 10 9 7 12 12 C 1.38429 * 118.95762 * 180.02562 * 10 9 7 13 13 N 1.31764 * 120.92970 * 0.28068 * 12 10 9 14 14 C 1.31766 * 122.13998 * 359.42049 * 13 12 10 15 15 C 1.38433 * 120.93412 * 0.57622 * 14 13 12 16 16 F 1.35098 * 120.52323 * 179.69723 * 15 14 13 17 17 C 1.46932 * 118.73767 * 53.86250 * 6 5 4 18 18 C 1.53035 * 109.45515 * 119.97053 * 2 1 3 19 19 H 1.08993 * 109.50196 * 178.63052 * 18 2 1 20 20 C 1.53004 * 109.49610 * 298.69852 * 18 2 1 21 21 N 1.46501 * 109.47170 * 184.99372 * 20 18 2 22 22 C 1.36936 * 120.00188 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99411 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00151 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00061 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 119.99922 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47296 * 90.00103 * 26 24 22 28 28 H 1.48498 * 109.47202 * 209.99723 * 26 24 22 29 29 H 1.48491 * 109.47418 * 330.00061 * 26 24 22 30 30 H 1.09001 * 109.46502 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46864 * 299.96664 * 1 2 3 32 32 H 1.08998 * 109.47201 * 59.97128 * 1 2 3 33 33 H 1.09006 * 109.49509 * 181.40732 * 4 2 1 34 34 H 1.08995 * 109.53007 * 61.32401 * 4 2 1 35 35 H 1.09004 * 109.58686 * 185.58177 * 5 4 2 36 36 H 1.08990 * 109.70357 * 65.22527 * 5 4 2 37 37 H 1.08002 * 119.53131 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.53652 * 180.27374 * 14 13 12 39 39 H 1.08997 * 109.58463 * 65.92596 * 17 6 5 40 40 H 1.09002 * 109.58344 * 186.34832 * 17 6 5 41 41 H 1.08994 * 109.47312 * 304.99693 * 20 18 2 42 42 H 1.09003 * 109.47078 * 64.99599 * 20 18 2 43 43 H 0.97000 * 119.99758 * 0.02562 * 21 20 18 44 44 H 0.97002 * 120.00491 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4993 -2.1541 -1.2644 6 7 1.8621 -2.8089 -0.0002 7 6 2.5150 -3.9880 -0.0002 8 8 2.8091 -4.5198 1.0526 9 6 2.8734 -4.6346 -1.2806 10 6 1.9970 -5.5318 -1.9052 11 9 0.8023 -5.8251 -1.3466 12 6 2.3749 -6.1138 -3.1030 13 7 3.5409 -5.8386 -3.6516 14 6 4.3929 -4.9971 -3.1020 15 6 4.0996 -4.3681 -1.9041 16 9 4.9820 -3.5114 -1.3449 17 6 1.4942 -2.1569 1.2641 18 6 2.0397 -0.7208 1.2500 19 1 3.1294 -0.7426 1.2386 20 6 1.5568 0.0194 2.4990 21 7 2.1420 -0.6001 3.6906 22 6 1.8514 -0.1034 4.9332 23 1 1.1904 0.7447 5.0347 24 6 2.4063 -0.6900 6.0623 25 7 2.1266 -0.2130 7.2567 26 14 3.5490 -2.1572 5.8867 27 1 4.9490 -1.6809 5.7504 28 1 3.4348 -3.0204 7.0896 29 1 3.1718 -2.9369 4.6805 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1296 -0.7430 -1.2382 34 1 1.6964 -0.1936 -2.1402 35 1 1.9379 -2.7018 -2.0986 36 1 0.4145 -2.1367 -1.3687 37 1 1.7067 -6.8071 -3.5922 38 1 5.3356 -4.7988 -3.5904 39 1 0.4088 -2.1375 1.3629 40 1 1.9294 -2.7065 2.0988 41 1 1.8642 1.0636 2.4441 42 1 0.4697 -0.0368 2.5570 43 1 2.7359 -1.3615 3.5994 44 1 2.5147 -0.6226 8.0457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132851691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:25 Heat of formation + Delta-G solvation = -92.192791 kcal Electronic energy + Delta-G solvation = -30625.112795 eV Core-core repulsion = 26213.117714 eV Total energy + Delta-G solvation = -4411.995081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.40628 -50.38277 -41.98970 -40.89818 -39.46755 -36.89732 -35.19347 -33.80975 -33.73162 -31.99485 -31.91968 -28.91323 -27.97719 -26.48767 -25.28452 -24.82168 -24.68047 -22.67491 -21.83477 -20.18762 -19.49673 -19.45128 -19.19451 -18.78241 -18.01468 -17.23703 -17.21603 -16.92020 -16.77348 -16.70141 -16.25499 -16.19205 -16.01320 -15.51107 -15.29179 -14.96583 -14.88773 -14.67697 -14.62376 -14.41125 -14.34059 -13.96802 -13.47466 -13.38255 -13.18669 -13.02931 -12.75486 -12.53759 -12.31915 -12.14273 -11.91599 -11.86896 -11.83585 -11.42854 -11.36680 -11.19912 -11.03943 -10.91842 -10.21197 -9.88671 -9.34465 -8.09819 -5.41415 -0.74569 -0.55951 0.96740 1.28826 1.32392 1.38417 1.52375 2.08802 2.30743 2.39364 2.70010 2.81627 3.13377 3.22342 3.38865 3.43879 3.62683 3.64941 3.72863 3.88020 3.92524 4.10261 4.15915 4.18653 4.25332 4.35129 4.45954 4.55810 4.58172 4.64890 4.67410 4.82786 4.90003 5.01901 5.06529 5.16329 5.18236 5.20598 5.25473 5.34738 5.54224 5.70641 5.98572 6.15408 6.34355 6.62988 7.01030 7.78457 7.94616 9.11828 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.003670 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.312583 B = 7628.046286 C = 8491.044561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.120 4.120 5 C 0.098 3.902 6 N -0.588 5.588 7 C 0.552 3.448 8 O -0.570 6.570 9 C -0.160 4.160 10 C 0.100 3.900 11 F -0.119 7.119 12 C 0.093 3.907 13 N -0.422 5.422 14 C 0.092 3.908 15 C 0.098 3.902 16 F -0.121 7.121 17 C 0.121 3.879 18 C -0.095 4.095 19 H 0.060 0.940 20 C 0.162 3.838 21 N -0.763 5.763 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.054 4.054 25 N -0.978 5.978 26 Si 0.940 3.060 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.270 1.270 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.219 0.781 38 H 0.217 0.783 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -8.158 -33.474 34.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.023 4.023 6 N -0.319 5.319 7 C 0.338 3.662 8 O -0.449 6.449 9 C -0.173 4.173 10 C 0.078 3.922 11 F -0.098 7.098 12 C -0.065 4.065 13 N -0.128 5.128 14 C -0.066 4.066 15 C 0.075 3.925 16 F -0.099 7.099 17 C -0.001 4.001 18 C -0.114 4.114 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.409 5.409 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.246 4.246 25 N -0.629 5.629 26 Si 0.769 3.231 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.196 1.196 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.234 0.766 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.193 0.807 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.203 -8.642 -33.525 34.621 hybrid contribution 0.504 -0.300 2.391 2.462 sum 0.300 -8.943 -31.134 32.394 Atomic orbital electron populations 1.21987 0.93888 1.02136 1.02877 1.21069 0.97016 0.99655 0.92020 0.89399 1.21938 1.00915 0.93888 0.99079 1.22180 1.02291 0.94335 0.83459 1.48213 1.54788 1.19588 1.09300 1.18334 0.78119 0.81629 0.88109 1.90864 1.55425 1.64808 1.33785 1.20534 0.97066 1.02669 0.97020 1.18816 0.82025 0.97066 0.94342 1.91597 1.41954 1.91390 1.84838 1.23556 0.94529 0.98455 0.89990 1.67834 1.01896 1.11731 1.31389 1.23531 1.01403 0.91667 0.89984 1.18852 0.86312 0.92907 0.94410 1.91601 1.66262 1.67251 1.84834 1.21740 1.00581 0.93000 0.84804 1.21713 0.99981 0.93641 0.96099 0.92144 1.20878 0.96449 0.95235 0.83868 1.42895 1.57719 1.37461 1.02788 1.19078 1.22434 1.10786 0.83690 0.91541 1.25300 1.02413 1.01923 0.94952 1.69835 1.50209 1.45095 0.97797 0.85635 0.79874 0.80609 0.76982 1.20359 1.21750 1.19618 0.92662 0.93083 0.89937 0.91982 0.86596 0.89166 0.88379 0.76463 0.76635 0.89552 0.92721 0.94743 0.94424 0.80735 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.12 71.98 0.58 -2.06 16 2 C -0.08 -1.54 2.71 -10.77 -0.03 -1.57 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.75 5.63 30.67 0.17 -1.58 16 5 C 0.10 1.60 5.86 86.36 0.51 2.11 16 6 N -0.59 -15.67 2.97 -821.45 -2.44 -18.11 16 7 C 0.55 17.21 6.62 86.79 0.57 17.78 16 8 O -0.57 -24.04 16.52 -3.90 -0.06 -24.10 16 9 C -0.16 -3.55 3.67 -19.82 -0.07 -3.62 16 10 C 0.10 1.72 7.34 22.77 0.17 1.89 16 11 F -0.12 -2.42 16.92 44.97 0.76 -1.66 16 12 C 0.09 0.97 11.16 84.75 0.95 1.92 16 13 N -0.42 -4.77 10.32 -195.62 -2.02 -6.79 16 14 C 0.09 1.02 11.16 84.75 0.95 1.96 16 15 C 0.10 1.75 7.20 22.77 0.16 1.91 16 16 F -0.12 -2.65 16.92 44.97 0.76 -1.89 16 17 C 0.12 3.87 5.07 86.51 0.44 4.31 16 18 C -0.09 -2.82 2.16 -10.57 -0.02 -2.84 16 19 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 20 C 0.16 6.11 5.18 86.38 0.45 6.56 16 21 N -0.76 -37.75 5.18 -343.45 -1.78 -39.53 16 22 C -0.23 -13.55 10.47 84.03 0.88 -12.67 16 23 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 24 C -0.05 -3.33 5.50 84.86 0.47 -2.86 16 25 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 26 Si 0.94 49.84 27.73 68.60 1.90 51.74 16 27 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 29 H -0.27 -14.08 6.52 99.48 0.65 -13.43 16 30 H 0.05 0.98 4.97 -2.39 -0.01 0.97 16 31 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.19 6.23 -2.38 -0.01 1.17 16 36 H 0.10 1.29 6.70 -2.39 -0.02 1.28 16 37 H 0.22 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.09 2.59 6.68 -2.39 -0.02 2.57 16 40 H 0.05 2.26 6.23 -2.39 -0.01 2.25 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.04 1.41 6.73 -2.39 -0.02 1.39 16 43 H 0.36 18.04 4.78 -92.71 -0.44 17.60 16 44 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -82.00 359.36 4.15 -77.85 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.56 Total: 15.56 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.17 Total: 11.24 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.93 Total: -128.75 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.52 Total: -3.54 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.74 kcal Total: -82.00 4.15 -77.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.346 kcal (2) G-P(sol) polarization free energy of solvation -81.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds