Wall clock time and date at job start Wed Apr 1 2020 00:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21549 * 119.99758 * 179.97438 * 7 6 5 9 9 C 1.47842 * 119.99750 * 359.97438 * 7 6 5 10 10 C 1.40125 * 120.96297 * 89.71894 * 9 7 6 11 11 F 1.35099 * 120.51520 * 0.02562 * 10 9 7 12 12 C 1.38428 * 118.96147 * 179.77864 * 10 9 7 13 13 N 1.31767 * 120.93149 * 0.50690 * 12 10 9 14 14 C 1.31773 * 122.13597 * 359.74053 * 13 12 10 15 15 C 1.38429 * 120.93558 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.51990 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08996 * 109.49923 * 298.58843 * 18 2 1 20 20 C 1.53006 * 109.49435 * 58.68107 * 18 2 1 21 21 N 1.46495 * 109.46960 * 185.00197 * 20 18 2 22 22 C 1.36936 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00154 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99844 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47214 * 89.99987 * 26 24 22 28 28 H 1.48507 * 109.47286 * 209.99878 * 26 24 22 29 29 H 1.48499 * 109.47118 * 330.00085 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 34 34 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 35 35 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 36 36 H 1.09001 * 109.70369 * 65.22144 * 5 4 2 37 37 H 1.07998 * 119.53481 * 180.27372 * 12 10 9 38 38 H 1.08004 * 119.53184 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.59222 * 186.59958 * 17 6 5 40 40 H 1.09006 * 109.70276 * 66.24587 * 17 6 5 41 41 H 1.09001 * 109.46991 * 304.99842 * 20 18 2 42 42 H 1.09000 * 109.47170 * 64.99839 * 20 18 2 43 43 H 0.97002 * 120.00280 * 359.97438 * 21 20 18 44 44 H 0.96999 * 119.99556 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3636 -2.7139 -1.0521 9 6 5.4510 -2.8118 1.2810 10 6 4.7869 -3.8741 1.9086 11 9 3.6812 -4.4161 1.3528 12 6 5.2845 -4.3630 3.1043 13 7 6.3593 -3.8371 3.6560 14 6 7.0118 -2.8345 3.1034 15 6 6.5894 -2.2848 1.9052 16 9 7.2651 -1.2573 1.3458 17 6 3.5714 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2500 19 1 1.6975 -1.7557 -1.2383 20 6 1.5031 -0.0189 -2.4990 21 7 1.8919 -0.7773 -3.6906 22 6 1.5215 -0.3373 -4.9333 23 1 0.9424 0.5685 -5.0350 24 6 1.8904 -1.0557 -6.0624 25 7 2.5967 -2.1595 -5.9385 26 14 1.3846 -0.4559 -7.7575 27 1 2.4320 0.4491 -8.2953 28 1 1.2215 -1.6192 -8.6660 29 1 0.0982 0.2794 -7.6589 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6569 -0.2207 2.1399 34 1 1.6973 -1.7556 1.2384 35 1 3.9411 -1.2850 2.0988 36 1 3.9163 0.3396 1.3688 37 1 4.7825 -5.1844 3.5937 38 1 7.8881 -2.4355 3.5926 39 1 3.9416 -1.2851 -2.0981 40 1 3.9145 0.3401 -1.3695 41 1 0.4160 0.0393 -2.4442 42 1 1.9184 0.9872 -2.5571 43 1 2.4124 -1.5908 -3.5993 44 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132851692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:31 Heat of formation + Delta-G solvation = -74.058248 kcal Electronic energy + Delta-G solvation = -30330.176193 eV Core-core repulsion = 25918.967485 eV Total energy + Delta-G solvation = -4411.208708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.56121 -49.51567 -40.88011 -39.87968 -38.05481 -35.10006 -33.83055 -32.99936 -31.88164 -31.28485 -29.86894 -28.39163 -26.20969 -25.05384 -24.07511 -23.36435 -23.19170 -21.30293 -20.53487 -19.54834 -18.63385 -18.59312 -17.92107 -17.03682 -16.95092 -16.38708 -16.18269 -15.90551 -15.83384 -15.09828 -14.88156 -14.61874 -14.46093 -14.20383 -14.00644 -13.91008 -13.69402 -13.60870 -13.32904 -13.13608 -12.74149 -12.65828 -12.46044 -11.96474 -11.81382 -11.61673 -11.03149 -10.93170 -10.84875 -10.80080 -10.65011 -10.36139 -10.32377 -10.20007 -10.00128 -9.82702 -9.59361 -9.50254 -8.85577 -8.68441 -6.87745 -5.70649 -3.00618 0.09234 0.14348 2.21554 2.65260 2.81773 3.09934 3.46584 3.46709 3.51168 3.53509 3.72974 3.85580 4.13821 4.40073 4.52454 4.62347 4.73311 4.79438 4.90596 4.92284 5.06803 5.16855 5.18540 5.24119 5.55042 5.59526 5.62515 5.65526 5.73948 5.85088 5.86294 5.88928 5.97938 6.10157 6.18481 6.28047 6.39690 6.46925 6.51082 6.78026 6.86082 7.02457 7.19976 7.73549 7.89713 8.46874 9.57856 10.15486 10.49426 11.51596 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003187 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.058767 B = 8784.381388 C = 9577.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.594 5.594 7 C 0.558 3.442 8 O -0.500 6.500 9 C -0.144 4.144 10 C 0.112 3.888 11 F -0.106 7.106 12 C 0.068 3.932 13 N -0.420 5.420 14 C 0.067 3.933 15 C 0.110 3.890 16 F -0.109 7.109 17 C 0.119 3.881 18 C -0.102 4.102 19 H 0.076 0.924 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.019 0.981 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 0.769 25.535 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.327 5.327 7 C 0.342 3.658 8 O -0.374 6.374 9 C -0.157 4.157 10 C 0.089 3.911 11 F -0.085 7.085 12 C -0.091 4.091 13 N -0.127 5.127 14 C -0.092 4.092 15 C 0.087 3.913 16 F -0.087 7.087 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.094 0.906 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.200 0.800 38 H 0.200 0.800 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.838 0.303 25.540 25.996 hybrid contribution -0.450 0.433 -1.949 2.047 sum 4.388 0.736 23.590 24.006 Atomic orbital electron populations 1.21874 0.94712 1.02070 1.01809 1.21099 0.96199 0.99369 0.93678 0.90898 1.21985 0.93870 1.01937 0.98822 1.21773 0.95376 0.99309 0.85217 1.48113 1.41878 1.34095 1.08609 1.17683 0.80252 0.80486 0.87343 1.90933 1.56644 1.58768 1.31063 1.20724 0.97635 0.99132 0.98175 1.18658 0.85655 0.93339 0.93418 1.91642 1.48619 1.83679 1.84522 1.23033 0.93820 1.00567 0.91679 1.67658 1.05621 1.07887 1.31556 1.23019 1.00812 0.93694 0.91628 1.18641 0.91163 0.87995 0.93457 1.91621 1.77812 1.54844 1.84441 1.21869 0.94046 0.99412 0.84810 1.21735 0.94026 1.01008 0.95385 0.90579 1.20718 0.96927 0.94011 0.85211 1.42419 1.65486 1.29076 1.00824 1.19187 1.28093 1.06321 0.83749 0.91230 1.24762 1.00819 0.97476 0.97833 1.69679 1.42361 1.17158 1.28537 0.86207 0.77989 0.77452 0.84613 1.21742 1.21802 1.20814 0.92698 0.93154 0.91506 0.90550 0.91256 0.91073 0.90642 0.79958 0.80004 0.87521 0.90945 0.95368 0.96325 0.78147 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.82 37.16 0.33 -1.35 16 2 C -0.08 -1.01 2.23 -90.57 -0.20 -1.21 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 5 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 6 N -0.59 -8.58 2.97 -173.89 -0.52 -9.09 16 7 C 0.56 9.06 6.62 -12.33 -0.08 8.98 16 8 O -0.50 -10.53 16.52 5.32 0.09 -10.44 16 9 C -0.14 -1.77 3.68 -104.55 -0.38 -2.16 16 10 C 0.11 1.18 7.19 -38.80 -0.28 0.90 16 11 F -0.11 -1.30 16.91 2.25 0.04 -1.26 16 12 C 0.07 0.53 11.16 -17.51 -0.20 0.34 16 13 N -0.42 -3.45 10.33 -13.18 -0.14 -3.59 16 14 C 0.07 0.51 11.16 -17.51 -0.20 0.32 16 15 C 0.11 1.12 7.34 -38.80 -0.28 0.84 16 16 F -0.11 -1.24 16.92 2.25 0.04 -1.20 16 17 C 0.12 2.01 5.52 -3.71 -0.02 1.99 16 18 C -0.10 -1.64 1.92 -90.50 -0.17 -1.81 16 19 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.16 3.14 5.41 -4.04 -0.02 3.12 16 21 N -0.73 -18.85 5.38 -59.91 -0.32 -19.17 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 26 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.84 6.29 -51.92 -0.33 0.51 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.63 6.22 -51.93 -0.32 0.31 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.11 2.25 6.21 -51.93 -0.32 1.93 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.56 6.14 -51.93 -0.32 0.24 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.64 6.90 -40.82 -0.28 10.35 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -34.61 368.48 -7.25 -41.86 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.77 Total: 5.71 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.92 Total: 2.12 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.25 Total: -60.19 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -7.25 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.198 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds