Wall clock time and date at job start Wed Apr 1 2020 00:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21549 * 119.99758 * 179.97438 * 7 6 5 9 9 C 1.47842 * 119.99750 * 359.97438 * 7 6 5 10 10 C 1.40125 * 120.96297 * 89.71894 * 9 7 6 11 11 F 1.35099 * 120.51520 * 0.02562 * 10 9 7 12 12 C 1.38428 * 118.96147 * 179.77864 * 10 9 7 13 13 N 1.31767 * 120.93149 * 0.50690 * 12 10 9 14 14 C 1.31773 * 122.13597 * 359.74053 * 13 12 10 15 15 C 1.38429 * 120.93558 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.51990 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08996 * 109.49923 * 298.58843 * 18 2 1 20 20 C 1.53006 * 109.49435 * 58.68107 * 18 2 1 21 21 N 1.46495 * 109.46960 * 185.00197 * 20 18 2 22 22 C 1.36936 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00154 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99844 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47214 * 89.99987 * 26 24 22 28 28 H 1.48507 * 109.47286 * 209.99878 * 26 24 22 29 29 H 1.48499 * 109.47118 * 330.00085 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 34 34 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 35 35 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 36 36 H 1.09001 * 109.70369 * 65.22144 * 5 4 2 37 37 H 1.07998 * 119.53481 * 180.27372 * 12 10 9 38 38 H 1.08004 * 119.53184 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.59222 * 186.59958 * 17 6 5 40 40 H 1.09006 * 109.70276 * 66.24587 * 17 6 5 41 41 H 1.09001 * 109.46991 * 304.99842 * 20 18 2 42 42 H 1.09000 * 109.47170 * 64.99839 * 20 18 2 43 43 H 0.97002 * 120.00280 * 359.97438 * 21 20 18 44 44 H 0.96999 * 119.99556 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3636 -2.7139 -1.0521 9 6 5.4510 -2.8118 1.2810 10 6 4.7869 -3.8741 1.9086 11 9 3.6812 -4.4161 1.3528 12 6 5.2845 -4.3630 3.1043 13 7 6.3593 -3.8371 3.6560 14 6 7.0118 -2.8345 3.1034 15 6 6.5894 -2.2848 1.9052 16 9 7.2651 -1.2573 1.3458 17 6 3.5714 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2500 19 1 1.6975 -1.7557 -1.2383 20 6 1.5031 -0.0189 -2.4990 21 7 1.8919 -0.7773 -3.6906 22 6 1.5215 -0.3373 -4.9333 23 1 0.9424 0.5685 -5.0350 24 6 1.8904 -1.0557 -6.0624 25 7 2.5967 -2.1595 -5.9385 26 14 1.3846 -0.4559 -7.7575 27 1 2.4320 0.4491 -8.2953 28 1 1.2215 -1.6192 -8.6660 29 1 0.0982 0.2794 -7.6589 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6569 -0.2207 2.1399 34 1 1.6973 -1.7556 1.2384 35 1 3.9411 -1.2850 2.0988 36 1 3.9163 0.3396 1.3688 37 1 4.7825 -5.1844 3.5937 38 1 7.8881 -2.4355 3.5926 39 1 3.9416 -1.2851 -2.0981 40 1 3.9145 0.3401 -1.3695 41 1 0.4160 0.0393 -2.4442 42 1 1.9184 0.9872 -2.5571 43 1 2.4124 -1.5908 -3.5993 44 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132851692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:30 Heat of formation + Delta-G solvation = -97.702447 kcal Electronic energy + Delta-G solvation = -30331.201482 eV Core-core repulsion = 25918.967485 eV Total energy + Delta-G solvation = -4412.233997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.39070 -50.36711 -41.89413 -40.80877 -39.32542 -36.73272 -35.28961 -33.89279 -33.53950 -31.98030 -31.53646 -29.46860 -27.68526 -26.23970 -25.00171 -24.80513 -24.31013 -22.68188 -21.70171 -20.69409 -19.47999 -19.39380 -19.19944 -18.81923 -17.97293 -17.20870 -17.19969 -16.80893 -16.77523 -16.68612 -16.26010 -15.70943 -15.66078 -15.49630 -15.22498 -14.99819 -14.87116 -14.56867 -14.40254 -14.38691 -14.21710 -14.12090 -13.36259 -13.20229 -13.09074 -12.83086 -12.72325 -12.70452 -12.21878 -12.10672 -11.97471 -11.89687 -11.77911 -11.36880 -11.27116 -11.16447 -10.96957 -10.87705 -10.19758 -9.92690 -9.02299 -7.96288 -5.26937 -0.73088 -0.54503 1.00886 1.43668 1.46773 1.55188 1.55773 2.10309 2.32620 2.53808 2.71608 2.84459 3.14710 3.36651 3.40893 3.56776 3.65383 3.68940 3.75850 3.90811 4.08457 4.12977 4.18066 4.25030 4.29613 4.42456 4.51765 4.58047 4.65168 4.69799 4.74282 4.85541 4.89699 5.00937 5.07454 5.17011 5.18747 5.20373 5.28396 5.43666 5.46330 5.53394 6.02188 6.24047 6.35260 6.67817 7.29377 8.05698 8.27594 9.27256 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003187 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.058767 B = 8784.381388 C = 9577.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.120 4.120 5 C 0.099 3.901 6 N -0.590 5.590 7 C 0.550 3.450 8 O -0.569 6.569 9 C -0.160 4.160 10 C 0.096 3.904 11 F -0.122 7.122 12 C 0.093 3.907 13 N -0.421 5.421 14 C 0.094 3.906 15 C 0.100 3.900 16 F -0.120 7.120 17 C 0.125 3.875 18 C -0.088 4.088 19 H 0.049 0.951 20 C 0.158 3.842 21 N -0.749 5.749 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.264 1.264 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.218 0.782 38 H 0.220 0.780 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.369 0.631 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 2.240 29.180 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.158 4.158 5 C -0.022 4.022 6 N -0.321 5.321 7 C 0.337 3.663 8 O -0.448 6.448 9 C -0.172 4.172 10 C 0.074 3.926 11 F -0.101 7.101 12 C -0.065 4.065 13 N -0.128 5.128 14 C -0.064 4.064 15 C 0.077 3.923 16 F -0.098 7.098 17 C 0.003 3.997 18 C -0.108 4.108 19 H 0.068 0.932 20 C 0.031 3.969 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.234 0.766 38 H 0.237 0.763 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.200 0.800 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.282 1.838 29.265 29.633 hybrid contribution -0.282 0.007 -2.971 2.984 sum 4.000 1.845 26.294 26.660 Atomic orbital electron populations 1.21846 0.93911 1.01754 1.02644 1.21100 0.96767 0.99738 0.92087 0.89255 1.21975 0.93206 1.01510 0.99110 1.22158 0.95849 1.00647 0.83503 1.48224 1.41073 1.33473 1.09283 1.18363 0.79721 0.80119 0.88134 1.90887 1.59076 1.60929 1.33870 1.20554 0.99260 1.00562 0.96856 1.18884 0.85767 0.93465 0.94503 1.91603 1.49502 1.83941 1.85023 1.23524 0.92949 1.00100 0.89930 1.67843 1.05639 1.07976 1.31321 1.23566 1.00777 0.92209 0.89881 1.18824 0.90717 0.88355 0.94370 1.91594 1.77950 1.55402 1.84843 1.21555 0.94609 0.98731 0.84792 1.21577 0.93229 0.99733 0.96222 0.93209 1.20923 0.97367 0.93883 0.84701 1.42694 1.65304 1.29077 1.02103 1.19675 1.26885 1.06148 0.84924 0.90132 1.25675 1.01613 0.97931 1.02017 1.69880 1.44469 1.18898 1.29138 0.85082 0.78222 0.76698 0.79410 1.21396 1.22376 1.18894 0.93625 0.89961 0.92976 0.86448 0.92374 0.89102 0.88354 0.76583 0.76336 0.92868 0.90075 0.94531 0.95555 0.79971 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.82 71.98 0.63 -2.32 16 2 C -0.08 -1.71 2.23 -10.76 -0.02 -1.73 16 3 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.03 5.36 30.67 0.16 -1.87 16 5 C 0.10 1.84 6.34 86.36 0.55 2.39 16 6 N -0.59 -17.56 2.97 -822.33 -2.44 -20.00 16 7 C 0.55 18.98 6.62 86.79 0.57 19.55 16 8 O -0.57 -26.39 16.52 -3.87 -0.06 -26.45 16 9 C -0.16 -3.94 3.68 -19.82 -0.07 -4.01 16 10 C 0.10 1.95 7.19 22.77 0.16 2.12 16 11 F -0.12 -3.03 16.91 44.97 0.76 -2.27 16 12 C 0.09 1.19 11.16 84.75 0.95 2.14 16 13 N -0.42 -5.37 10.33 -195.62 -2.02 -7.39 16 14 C 0.09 1.12 11.16 84.75 0.95 2.07 16 15 C 0.10 1.91 7.34 22.77 0.17 2.08 16 16 F -0.12 -2.65 16.92 44.97 0.76 -1.89 16 17 C 0.13 4.49 5.52 86.36 0.48 4.97 16 18 C -0.09 -2.92 1.92 -10.71 -0.02 -2.94 16 19 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 20 C 0.16 6.36 5.41 86.38 0.47 6.83 16 21 N -0.75 -40.35 5.38 -343.45 -1.85 -42.20 16 22 C -0.24 -14.24 9.99 84.03 0.84 -13.40 16 23 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 24 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 25 N -0.97 -63.80 13.06 21.65 0.28 -63.52 16 26 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.22 6.29 -2.38 -0.01 1.20 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.38 6.22 -2.39 -0.01 1.37 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.22 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.22 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.05 2.50 6.21 -2.39 -0.01 2.48 16 40 H 0.08 2.69 8.14 -2.38 -0.02 2.68 16 41 H 0.04 1.44 6.14 -2.39 -0.01 1.43 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.37 21.97 6.90 -92.71 -0.64 21.33 16 44 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -82.26 368.48 4.14 -78.12 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.41 Total: 23.99 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.28 Total: 11.47 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -6.03 Total: -133.11 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.06 Total: -26.45 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 1.52 Total: -4.15 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -82.26 4.14 -78.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.582 kcal (2) G-P(sol) polarization free energy of solvation -82.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds