Wall clock time and date at job start Wed Apr 1 2020 00:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 5 5 C 1.53183 * 109.31431 * 58.64073 * 4 2 1 6 6 N 1.46935 * 108.77653 * 54.63472 * 5 4 2 7 7 C 1.34775 * 120.63332 * 126.36807 * 6 5 4 8 8 O 1.21543 * 120.00218 * 179.97438 * 7 6 5 9 9 C 1.47850 * 119.99833 * 0.02562 * 7 6 5 10 10 C 1.40121 * 120.96175 * 89.71615 * 9 7 6 11 11 F 1.35103 * 120.52017 * 359.97438 * 10 9 7 12 12 C 1.38427 * 118.96239 * 179.77539 * 10 9 7 13 13 N 1.31771 * 120.93115 * 0.51599 * 12 10 9 14 14 C 1.31775 * 122.13680 * 359.73289 * 13 12 10 15 15 C 1.38434 * 120.92968 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.51830 * 179.97438 * 15 14 13 17 17 C 1.46931 * 118.73608 * 306.39271 * 6 5 4 18 18 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 19 19 H 1.09002 * 109.49271 * 181.39705 * 18 2 1 20 20 C 1.53002 * 109.49707 * 61.30660 * 18 2 1 21 21 N 1.46494 * 109.46991 * 174.99977 * 20 18 2 22 22 C 1.36943 * 119.99828 * 179.97438 * 21 20 18 23 23 H 1.07989 * 119.99919 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99607 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99757 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00529 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47570 * 89.99671 * 26 24 22 28 28 H 1.48500 * 109.47170 * 210.00127 * 26 24 22 29 29 H 1.48505 * 109.46799 * 329.99609 * 26 24 22 30 30 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 32 32 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49048 * 178.59203 * 4 2 1 34 34 H 1.08988 * 109.49532 * 298.68684 * 4 2 1 35 35 H 1.09002 * 109.59073 * 174.41995 * 5 4 2 36 36 H 1.09000 * 109.58915 * 294.84646 * 5 4 2 37 37 H 1.08000 * 119.54150 * 180.27221 * 12 10 9 38 38 H 1.07993 * 119.53292 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.58268 * 173.39637 * 17 6 5 40 40 H 1.09004 * 109.58282 * 293.82052 * 17 6 5 41 41 H 1.08998 * 109.46766 * 294.99732 * 20 18 2 42 42 H 1.08993 * 109.47158 * 54.99376 * 20 18 2 43 43 H 0.96998 * 120.00225 * 359.97438 * 21 20 18 44 44 H 0.97000 * 120.00323 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1542 1.2642 6 7 1.8621 -2.8090 -0.0001 7 6 2.5157 -3.9876 -0.0003 8 8 2.8097 -4.5194 -1.0529 9 6 2.8741 -4.6343 1.2801 10 6 1.9956 -5.5278 1.9072 11 9 0.7984 -5.8165 1.3516 12 6 2.3753 -6.1132 3.1027 13 7 3.5384 -5.8327 3.6549 14 6 4.3926 -4.9950 3.1028 15 6 4.0995 -4.3665 1.9047 16 9 4.9813 -3.5087 1.3463 17 6 1.4991 -2.1541 -1.2643 18 6 2.0396 -0.7209 -1.2502 19 1 3.1293 -0.7431 -1.2385 20 6 1.5566 0.0195 -2.4990 21 7 2.1418 -0.5998 -3.6907 22 6 1.8504 -0.1037 -4.9334 23 1 1.1888 0.7438 -5.0349 24 6 2.4053 -0.6902 -6.0625 25 7 2.1247 -0.2137 -7.2569 26 14 3.5490 -2.1566 -5.8870 27 1 2.7556 -3.4112 -5.9295 28 1 4.5314 -2.1542 -7.0006 29 1 4.2694 -2.0702 -4.5913 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1296 -0.7432 1.2380 34 1 1.6961 -0.1936 2.1397 35 1 1.9380 -2.7019 2.0983 36 1 0.4144 -2.1345 1.3675 37 1 1.7073 -6.8067 3.5918 38 1 5.3347 -4.7959 3.5919 39 1 1.9375 -2.7018 -2.0985 40 1 0.4141 -2.1344 -1.3672 41 1 0.4697 -0.0366 -2.5570 42 1 1.8641 1.0637 -2.4440 43 1 2.7357 -1.3613 -3.5996 44 1 2.5128 -0.6233 -8.0459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132851693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:38 Heat of formation + Delta-G solvation = -67.573814 kcal Electronic energy + Delta-G solvation = -30624.459992 eV Core-core repulsion = 26213.532470 eV Total energy + Delta-G solvation = -4410.927522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.65207 -49.61936 -41.04623 -40.09468 -38.31574 -35.25723 -33.86375 -33.00394 -31.97300 -31.37284 -30.32907 -27.95652 -26.64477 -25.35398 -24.41370 -24.16582 -22.98499 -21.24175 -20.76070 -18.95591 -18.72974 -18.57903 -17.87416 -17.43016 -17.09811 -16.48010 -16.34944 -16.01112 -15.93187 -15.27745 -15.19935 -15.02711 -14.63462 -14.29174 -14.20935 -13.97056 -13.78667 -13.69947 -13.52220 -13.19885 -12.75112 -12.64961 -12.58340 -12.19910 -11.85305 -11.60715 -11.29812 -11.18890 -10.92038 -10.90091 -10.75087 -10.45770 -10.40348 -10.26286 -10.07847 -9.95478 -9.59069 -9.55054 -8.88270 -8.77666 -7.21107 -5.74539 -3.10276 -0.00388 0.05521 2.06887 2.52496 2.72457 3.00016 3.37281 3.44427 3.49256 3.52915 3.63840 3.74363 4.04352 4.30983 4.44152 4.62356 4.63897 4.67875 4.81100 4.82456 4.95583 5.05107 5.09449 5.10875 5.33254 5.44550 5.52422 5.55409 5.59058 5.67601 5.72324 5.77854 5.80928 5.89386 6.12354 6.15371 6.19176 6.28516 6.35502 6.62101 6.73069 6.94168 7.04965 7.74166 8.00771 8.44424 9.23193 9.96153 10.14951 11.43687 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003670 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.871072 B = 7627.737347 C = 8489.794366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.593 5.593 7 C 0.560 3.440 8 O -0.507 6.507 9 C -0.145 4.145 10 C 0.110 3.890 11 F -0.109 7.109 12 C 0.068 3.932 13 N -0.419 5.419 14 C 0.069 3.931 15 C 0.111 3.889 16 F -0.107 7.107 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.075 0.925 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.880 3.120 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -7.537 28.832 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.326 5.326 7 C 0.344 3.656 8 O -0.381 6.381 9 C -0.158 4.158 10 C 0.088 3.912 11 F -0.087 7.087 12 C -0.090 4.090 13 N -0.126 5.126 14 C -0.090 4.090 15 C 0.089 3.911 16 F -0.085 7.085 17 C -0.003 4.003 18 C -0.127 4.127 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.710 3.290 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.279 -8.045 28.792 29.896 hybrid contribution 0.629 -0.538 -1.041 1.330 sum 0.351 -8.582 27.752 29.050 Atomic orbital electron populations 1.22008 0.94924 1.02024 1.02224 1.21071 0.96242 0.99605 0.93372 0.90263 1.21948 1.01323 0.94454 0.98941 1.21829 1.00926 0.94060 0.84988 1.48114 1.55826 1.19957 1.08672 1.17695 0.78942 0.81582 0.87384 1.90902 1.52860 1.63111 1.31228 1.20683 0.95454 1.01493 0.98159 1.18640 0.82313 0.96762 0.93499 1.91624 1.41107 1.91367 1.84587 1.23038 0.94712 0.99674 0.91613 1.67669 1.01731 1.11708 1.31506 1.23048 1.00667 0.93715 0.91577 1.18656 0.87006 0.92017 0.93436 1.91637 1.65949 1.66518 1.84432 1.21895 1.00715 0.93061 0.84677 1.21772 1.01050 0.94049 0.95810 0.90644 1.20658 0.96432 0.94996 0.84129 1.42787 1.57292 1.37649 1.02608 1.19027 1.24200 1.12464 0.81796 0.89170 1.24643 1.00107 0.99008 0.95117 1.69700 1.48257 1.43200 0.97024 0.86616 0.81430 0.83917 0.77000 1.20854 1.21664 1.20315 0.92874 0.91417 0.92517 0.91307 0.90361 0.91054 0.90206 0.79928 0.79911 0.88344 0.90215 0.94941 0.95101 0.80565 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.11 37.16 0.30 -1.25 16 2 C -0.08 -0.92 2.71 -90.57 -0.25 -1.17 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.16 5.63 -26.61 -0.15 -1.31 16 5 C 0.10 0.99 5.87 -3.71 -0.02 0.97 16 6 N -0.59 -7.95 2.97 -173.88 -0.52 -8.47 16 7 C 0.56 8.52 6.62 -12.33 -0.08 8.43 16 8 O -0.51 -10.02 16.52 5.33 0.09 -9.94 16 9 C -0.15 -1.67 3.67 -104.55 -0.38 -2.05 16 10 C 0.11 1.05 7.34 -38.81 -0.28 0.76 16 11 F -0.11 -1.15 16.92 2.25 0.04 -1.12 16 12 C 0.07 0.48 11.16 -17.51 -0.20 0.28 16 13 N -0.42 -3.19 10.33 -13.18 -0.14 -3.33 16 14 C 0.07 0.49 11.16 -17.50 -0.20 0.30 16 15 C 0.11 1.09 7.20 -38.80 -0.28 0.81 16 16 F -0.11 -1.22 16.91 2.25 0.04 -1.18 16 17 C 0.12 1.83 5.05 -3.71 -0.02 1.81 16 18 C -0.11 -1.61 2.15 -90.50 -0.19 -1.80 16 19 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 20 C 0.17 3.10 5.19 -4.04 -0.02 3.08 16 21 N -0.76 -18.33 5.18 -59.92 -0.31 -18.64 16 22 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 23 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 24 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16 26 Si 0.88 23.39 27.74 -169.99 -4.71 18.67 16 27 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 29 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.53 8.14 -51.94 -0.42 0.11 16 35 H 0.07 0.58 6.23 -51.93 -0.32 0.26 16 36 H 0.08 0.67 6.69 -51.93 -0.35 0.32 16 37 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.10 1.90 6.21 -51.93 -0.32 1.57 16 40 H 0.08 1.17 6.69 -51.93 -0.35 0.82 16 41 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.84 4.76 -40.82 -0.19 8.65 16 44 H 0.26 7.93 8.31 -40.82 -0.34 7.60 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -35.43 359.30 -6.81 -42.24 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.46 Total: 3.74 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.02 Total: 1.77 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.19 Total: -59.61 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.43 -6.81 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.334 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds