Wall clock time and date at job start Wed Apr 1 2020 00:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 5 5 C 1.53183 * 109.31431 * 58.64073 * 4 2 1 6 6 N 1.46935 * 108.77653 * 54.63472 * 5 4 2 7 7 C 1.34775 * 120.63332 * 126.36807 * 6 5 4 8 8 O 1.21543 * 120.00218 * 179.97438 * 7 6 5 9 9 C 1.47850 * 119.99833 * 0.02562 * 7 6 5 10 10 C 1.40121 * 120.96175 * 89.71615 * 9 7 6 11 11 F 1.35103 * 120.52017 * 359.97438 * 10 9 7 12 12 C 1.38427 * 118.96239 * 179.77539 * 10 9 7 13 13 N 1.31771 * 120.93115 * 0.51599 * 12 10 9 14 14 C 1.31775 * 122.13680 * 359.73289 * 13 12 10 15 15 C 1.38434 * 120.92968 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.51830 * 179.97438 * 15 14 13 17 17 C 1.46931 * 118.73608 * 306.39271 * 6 5 4 18 18 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 19 19 H 1.09002 * 109.49271 * 181.39705 * 18 2 1 20 20 C 1.53002 * 109.49707 * 61.30660 * 18 2 1 21 21 N 1.46494 * 109.46991 * 174.99977 * 20 18 2 22 22 C 1.36943 * 119.99828 * 179.97438 * 21 20 18 23 23 H 1.07989 * 119.99919 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99607 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99757 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00529 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47570 * 89.99671 * 26 24 22 28 28 H 1.48500 * 109.47170 * 210.00127 * 26 24 22 29 29 H 1.48505 * 109.46799 * 329.99609 * 26 24 22 30 30 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 32 32 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49048 * 178.59203 * 4 2 1 34 34 H 1.08988 * 109.49532 * 298.68684 * 4 2 1 35 35 H 1.09002 * 109.59073 * 174.41995 * 5 4 2 36 36 H 1.09000 * 109.58915 * 294.84646 * 5 4 2 37 37 H 1.08000 * 119.54150 * 180.27221 * 12 10 9 38 38 H 1.07993 * 119.53292 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.58268 * 173.39637 * 17 6 5 40 40 H 1.09004 * 109.58282 * 293.82052 * 17 6 5 41 41 H 1.08998 * 109.46766 * 294.99732 * 20 18 2 42 42 H 1.08993 * 109.47158 * 54.99376 * 20 18 2 43 43 H 0.96998 * 120.00225 * 359.97438 * 21 20 18 44 44 H 0.97000 * 120.00323 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1542 1.2642 6 7 1.8621 -2.8090 -0.0001 7 6 2.5157 -3.9876 -0.0003 8 8 2.8097 -4.5194 -1.0529 9 6 2.8741 -4.6343 1.2801 10 6 1.9956 -5.5278 1.9072 11 9 0.7984 -5.8165 1.3516 12 6 2.3753 -6.1132 3.1027 13 7 3.5384 -5.8327 3.6549 14 6 4.3926 -4.9950 3.1028 15 6 4.0995 -4.3665 1.9047 16 9 4.9813 -3.5087 1.3463 17 6 1.4991 -2.1541 -1.2643 18 6 2.0396 -0.7209 -1.2502 19 1 3.1293 -0.7431 -1.2385 20 6 1.5566 0.0195 -2.4990 21 7 2.1418 -0.5998 -3.6907 22 6 1.8504 -0.1037 -4.9334 23 1 1.1888 0.7438 -5.0349 24 6 2.4053 -0.6902 -6.0625 25 7 2.1247 -0.2137 -7.2569 26 14 3.5490 -2.1566 -5.8870 27 1 2.7556 -3.4112 -5.9295 28 1 4.5314 -2.1542 -7.0006 29 1 4.2694 -2.0702 -4.5913 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1296 -0.7432 1.2380 34 1 1.6961 -0.1936 2.1397 35 1 1.9380 -2.7019 2.0983 36 1 0.4144 -2.1345 1.3675 37 1 1.7073 -6.8067 3.5918 38 1 5.3347 -4.7959 3.5919 39 1 1.9375 -2.7018 -2.0985 40 1 0.4141 -2.1344 -1.3672 41 1 0.4697 -0.0366 -2.5570 42 1 1.8641 1.0637 -2.4440 43 1 2.7357 -1.3613 -3.5996 44 1 2.5128 -0.6233 -8.0459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132851693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:37 Heat of formation + Delta-G solvation = -92.094370 kcal Electronic energy + Delta-G solvation = -30625.523283 eV Core-core repulsion = 26213.532470 eV Total energy + Delta-G solvation = -4411.990813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.40638 -50.38202 -41.99589 -40.90202 -39.47666 -36.90114 -35.19501 -33.81146 -33.73650 -31.99430 -31.93326 -28.91910 -27.97635 -26.48986 -25.28585 -24.82121 -24.68166 -22.67700 -21.84101 -20.18886 -19.49667 -19.45074 -19.19537 -18.78331 -18.01342 -17.24081 -17.21431 -16.92107 -16.77984 -16.70115 -16.25506 -16.19804 -16.01863 -15.51343 -15.29191 -14.95839 -14.88729 -14.69173 -14.62253 -14.41036 -14.34206 -13.94840 -13.47965 -13.38252 -13.20392 -13.04980 -12.75267 -12.57373 -12.27511 -12.14669 -11.91442 -11.87113 -11.84206 -11.43462 -11.37557 -11.18801 -11.03746 -10.92519 -10.21182 -9.88839 -9.34740 -8.10054 -5.41646 -0.74557 -0.55921 0.96762 1.28449 1.32460 1.36406 1.52307 2.09056 2.30524 2.38898 2.70054 2.81541 3.13392 3.22222 3.38878 3.43701 3.62373 3.64992 3.73156 3.87335 3.92486 4.10528 4.15913 4.18641 4.25445 4.35041 4.45701 4.55762 4.58061 4.64737 4.67255 4.82655 4.89841 5.01788 5.06457 5.16220 5.18226 5.20515 5.25344 5.34674 5.54240 5.70581 5.98450 6.15279 6.34311 6.62820 7.00764 7.78153 7.94253 9.11611 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003670 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.871072 B = 7627.737347 C = 8489.794366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 H 0.087 0.913 4 C -0.121 4.121 5 C 0.098 3.902 6 N -0.588 5.588 7 C 0.552 3.448 8 O -0.569 6.569 9 C -0.160 4.160 10 C 0.100 3.900 11 F -0.119 7.119 12 C 0.093 3.907 13 N -0.422 5.422 14 C 0.092 3.908 15 C 0.097 3.903 16 F -0.121 7.121 17 C 0.121 3.879 18 C -0.095 4.095 19 H 0.058 0.942 20 C 0.162 3.838 21 N -0.763 5.763 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.053 4.053 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.285 1.285 28 H -0.288 1.288 29 H -0.267 1.267 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.219 0.781 38 H 0.217 0.783 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.034 0.966 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -8.153 33.449 34.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.159 4.159 5 C -0.023 4.023 6 N -0.319 5.319 7 C 0.338 3.662 8 O -0.448 6.448 9 C -0.173 4.173 10 C 0.078 3.922 11 F -0.098 7.098 12 C -0.065 4.065 13 N -0.128 5.128 14 C -0.066 4.066 15 C 0.075 3.925 16 F -0.100 7.100 17 C -0.001 4.001 18 C -0.115 4.115 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.409 5.409 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.246 4.246 25 N -0.629 5.629 26 Si 0.769 3.231 27 H -0.212 1.212 28 H -0.214 1.214 29 H -0.193 1.193 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.235 0.765 38 H 0.234 0.766 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.192 0.808 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.222 -8.628 33.503 34.597 hybrid contribution 0.527 -0.295 -2.379 2.455 sum 0.305 -8.923 31.124 32.379 Atomic orbital electron populations 1.21986 0.93840 1.02166 1.02888 1.21072 0.97048 0.99634 0.92009 0.89449 1.21938 1.00888 0.93938 0.99091 1.22184 1.02313 0.94298 0.83467 1.48212 1.54827 1.19562 1.09290 1.18321 0.78085 0.81645 0.88114 1.90855 1.55410 1.64800 1.33765 1.20536 0.97039 1.02734 0.96982 1.18811 0.81932 0.97114 0.94367 1.91598 1.41696 1.91495 1.84967 1.23560 0.94585 0.98398 0.89998 1.67844 1.01921 1.11741 1.31344 1.23531 1.01343 0.91756 0.89962 1.18855 0.86352 0.92872 0.94428 1.91601 1.66328 1.67159 1.84885 1.21648 1.00714 0.92948 0.84830 1.21635 0.99943 0.93754 0.96141 0.92309 1.20873 0.96498 0.95198 0.83833 1.42899 1.57458 1.37724 1.02795 1.19079 1.22300 1.10968 0.83634 0.91499 1.25295 1.02368 1.01927 0.94968 1.69834 1.50213 1.45075 0.97782 0.85636 0.79641 0.80549 0.77243 1.21188 1.21388 1.19295 0.89947 0.93057 0.92615 0.92037 0.86598 0.89167 0.88326 0.76461 0.76650 0.92654 0.89479 0.94288 0.94833 0.80756 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.11 71.98 0.58 -2.05 16 2 C -0.08 -1.55 2.71 -10.76 -0.03 -1.58 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.77 5.63 30.67 0.17 -1.59 16 5 C 0.10 1.60 5.87 86.36 0.51 2.11 16 6 N -0.59 -15.60 2.97 -822.31 -2.44 -18.04 16 7 C 0.55 17.13 6.62 86.79 0.57 17.71 16 8 O -0.57 -23.83 16.52 -3.85 -0.06 -23.90 16 9 C -0.16 -3.54 3.67 -19.82 -0.07 -3.61 16 10 C 0.10 1.71 7.34 22.77 0.17 1.88 16 11 F -0.12 -2.40 16.92 44.97 0.76 -1.64 16 12 C 0.09 0.97 11.16 84.75 0.95 1.92 16 13 N -0.42 -4.76 10.33 -195.62 -2.02 -6.78 16 14 C 0.09 1.02 11.16 84.75 0.95 1.96 16 15 C 0.10 1.75 7.20 22.77 0.16 1.91 16 16 F -0.12 -2.66 16.91 44.97 0.76 -1.90 16 17 C 0.12 3.84 5.05 86.36 0.44 4.28 16 18 C -0.10 -2.83 2.15 -10.72 -0.02 -2.85 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.16 6.12 5.19 86.38 0.45 6.57 16 21 N -0.76 -37.77 5.18 -343.48 -1.78 -39.55 16 22 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 23 H 0.07 4.22 8.06 -2.92 -0.02 4.19 16 24 C -0.05 -3.31 5.50 84.86 0.47 -2.84 16 25 N -0.98 -64.57 13.97 21.65 0.30 -64.27 16 26 Si 0.94 49.93 27.74 68.60 1.90 51.83 16 27 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.27 -13.59 6.52 99.48 0.65 -12.94 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 32 H 0.05 0.98 4.98 -2.39 -0.01 0.97 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.19 6.23 -2.39 -0.01 1.17 16 36 H 0.10 1.29 6.69 -2.39 -0.02 1.28 16 37 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.05 2.26 6.21 -2.39 -0.01 2.24 16 40 H 0.09 2.59 6.69 -2.38 -0.02 2.57 16 41 H 0.04 1.45 6.73 -2.39 -0.02 1.43 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.36 18.04 4.76 -92.71 -0.44 17.60 16 44 H 0.26 16.30 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -81.75 359.30 4.14 -77.61 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.56 Total: 15.49 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 6.17 Total: 11.14 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -5.94 Total: -128.64 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.52 Total: -3.54 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.90 Total: 51.83 kcal Total: -81.75 4.14 -77.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132851693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.486 kcal (2) G-P(sol) polarization free energy of solvation -81.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds