Wall clock time and date at job start Wed Apr 1 2020 00:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.45953 * 2 1 4 4 C 1.53043 * 109.44914 * 240.02984 * 2 1 3 5 5 C 1.53195 * 109.31214 * 178.62096 * 4 2 1 6 6 N 1.46927 * 108.77386 * 54.63756 * 5 4 2 7 7 C 1.34779 * 120.63044 * 126.66199 * 6 5 4 8 8 O 1.21550 * 119.99988 * 175.90034 * 7 6 5 9 9 C 1.47876 * 119.99579 * 355.90751 * 7 6 5 10 10 N 1.32837 * 119.72573 * 40.12895 * 9 7 6 11 11 C 1.31374 * 121.69419 * 179.97438 * 10 9 7 12 12 C 1.38999 * 120.92811 * 359.97230 * 11 10 9 13 13 F 1.35102 * 120.33059 * 180.02562 * 12 11 10 14 14 C 1.38723 * 119.34642 * 0.02562 * 12 11 10 15 15 C 1.38837 * 118.44276 * 359.73021 * 14 12 11 16 16 F 1.35107 * 120.48269 * 180.28625 * 15 14 12 17 17 C 1.46932 * 118.74141 * 306.39174 * 6 5 4 18 18 C 1.53045 * 109.45685 * 119.97137 * 2 1 3 19 19 H 1.08998 * 109.49793 * 61.42527 * 18 2 1 20 20 C 1.52998 * 109.52328 * 301.33820 * 18 2 1 21 21 N 1.46501 * 109.46974 * 175.14821 * 20 18 2 22 22 C 1.36933 * 120.00227 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00066 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00566 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00376 * 179.97438 * 24 22 21 26 26 Si 1.86809 * 119.99698 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47137 * 90.00102 * 26 24 22 28 28 H 1.48497 * 109.46930 * 210.00109 * 26 24 22 29 29 H 1.48504 * 109.46734 * 330.00062 * 26 24 22 30 30 H 1.08998 * 109.46955 * 300.02716 * 1 2 3 31 31 H 1.08992 * 109.46744 * 60.02970 * 1 2 3 32 32 H 1.08996 * 109.46860 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49446 * 298.57484 * 4 2 1 34 34 H 1.09004 * 109.49500 * 58.64123 * 4 2 1 35 35 H 1.08994 * 109.58592 * 294.85098 * 5 4 2 36 36 H 1.08997 * 109.58319 * 174.42022 * 5 4 2 37 37 H 1.07993 * 119.53510 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.78087 * 180.02562 * 14 12 11 39 39 H 1.08997 * 109.58605 * 173.39488 * 17 6 5 40 40 H 1.09003 * 109.58093 * 293.82368 * 17 6 5 41 41 H 1.09000 * 109.47251 * 295.14613 * 20 18 2 42 42 H 1.08991 * 109.47224 * 55.15058 * 20 18 2 43 43 H 0.97006 * 119.99856 * 0.02562 * 21 20 18 44 44 H 0.97007 * 120.00026 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5712 -0.6890 -1.2645 6 7 4.0677 -1.2494 -0.0002 7 6 4.9655 -2.2546 -0.0003 8 8 5.4246 -2.6594 1.0498 9 6 5.3919 -2.8648 -1.2780 10 7 5.6036 -2.0931 -2.3383 11 6 5.9835 -2.5940 -3.4918 12 6 6.1805 -3.9612 -3.6469 13 9 6.5718 -4.4633 -4.8385 14 6 5.9712 -4.8051 -2.5659 15 6 5.5749 -4.2468 -1.3581 16 9 5.3651 -5.0297 -0.2772 17 6 3.5714 -0.6891 1.2641 18 6 2.0398 -0.7209 1.2501 19 1 1.6976 -1.7557 1.2383 20 6 1.5030 -0.0196 2.4994 21 7 1.8952 -0.7765 3.6908 22 6 1.5245 -0.3375 4.9338 23 1 0.9433 0.5671 5.0358 24 6 1.8966 -1.0543 6.0627 25 7 1.5407 -0.6320 7.2574 26 14 2.9024 -2.6186 5.8863 27 1 4.3488 -2.2842 5.9263 28 1 2.5774 -3.5443 7.0010 29 1 2.5807 -3.2705 4.5914 30 1 -0.3633 0.5142 0.8897 31 1 -0.3632 0.5133 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6973 -1.7557 -1.2383 34 1 1.6565 -0.2211 -2.1399 35 1 3.9142 0.3404 -1.3676 36 1 3.9412 -1.2851 -2.0986 37 1 6.1452 -1.9342 -4.3314 38 1 6.1177 -5.8710 -2.6604 39 1 3.9417 -1.2851 2.0982 40 1 3.9145 0.3404 1.3671 41 1 1.9160 0.9875 2.5565 42 1 0.4158 0.0360 2.4460 43 1 2.4175 -1.5888 3.5992 44 1 1.8010 -1.1328 8.0463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132924766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:05 Heat of formation + Delta-G solvation = -86.568035 kcal Electronic energy + Delta-G solvation = -30005.475992 eV Core-core repulsion = 25593.724819 eV Total energy + Delta-G solvation = -4411.751173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37016 -50.27324 -42.04639 -40.63821 -39.22046 -36.81801 -35.22840 -33.78255 -33.68701 -32.43189 -31.70175 -29.34981 -27.70736 -26.11219 -25.13325 -24.58054 -24.12655 -22.59232 -21.81697 -20.70499 -19.68785 -19.50258 -19.39755 -18.57475 -17.78222 -17.27302 -17.15198 -16.75182 -16.62857 -16.40095 -16.30643 -15.93474 -15.65967 -15.51795 -15.30307 -14.91355 -14.68647 -14.66898 -14.50746 -14.29756 -14.12723 -13.98492 -13.70156 -13.41176 -13.15882 -12.86211 -12.68165 -12.64009 -12.24440 -12.06078 -11.90418 -11.84593 -11.68035 -11.43622 -11.27272 -11.14714 -11.03127 -10.68585 -10.26508 -9.77057 -9.31085 -8.07687 -5.38949 -0.90215 -0.42246 1.25424 1.30994 1.35276 1.39117 1.61365 2.10200 2.39865 2.41512 2.67715 2.82062 3.23988 3.24888 3.34940 3.48628 3.70353 3.76759 3.79977 3.92843 4.02387 4.15931 4.24888 4.25702 4.39046 4.53139 4.56218 4.58170 4.71373 4.77395 4.84409 4.91411 4.96482 5.05331 5.10815 5.15740 5.19807 5.23919 5.39740 5.48621 5.55739 5.73017 6.10784 6.17637 6.21447 6.81419 7.03445 7.81117 7.97386 9.13998 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.003381 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.158274 B = 8279.427158 C = 9789.852826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.087 0.913 4 C -0.123 4.123 5 C 0.096 3.904 6 N -0.585 5.585 7 C 0.558 3.442 8 O -0.571 6.571 9 C 0.029 3.971 10 N -0.401 5.401 11 C 0.082 3.918 12 C 0.118 3.882 13 F -0.107 7.107 14 C -0.140 4.140 15 C 0.115 3.885 16 F -0.123 7.123 17 C 0.120 3.880 18 C -0.093 4.093 19 H 0.058 0.942 20 C 0.160 3.840 21 N -0.763 5.763 22 C -0.227 4.227 23 H 0.066 0.934 24 C -0.055 4.055 25 N -0.979 5.979 26 Si 0.941 3.059 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.266 1.266 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.227 0.773 38 H 0.193 0.807 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.041 0.959 43 H 0.360 0.640 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.472 -4.254 -34.754 35.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.025 4.025 6 N -0.315 5.315 7 C 0.345 3.655 8 O -0.450 6.450 9 C -0.108 4.108 10 N -0.112 5.112 11 C -0.080 4.080 12 C 0.096 3.904 13 F -0.085 7.085 14 C -0.167 4.167 15 C 0.092 3.908 16 F -0.101 7.101 17 C -0.003 4.003 18 C -0.113 4.113 19 H 0.076 0.924 20 C 0.034 3.966 21 N -0.408 5.408 22 C -0.358 4.358 23 H 0.084 0.916 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.770 3.230 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.191 1.191 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.243 0.757 38 H 0.210 0.790 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.193 0.807 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.456 -3.452 -33.930 34.911 hybrid contribution 0.749 -2.261 1.143 2.642 sum 8.204 -5.713 -32.787 34.278 Atomic orbital electron populations 1.21863 0.94183 1.01780 1.02506 1.21097 0.96514 0.99830 0.92320 0.89432 1.22027 0.94269 1.01111 0.98683 1.22479 0.94433 1.01065 0.84507 1.48104 1.40886 1.33316 1.09179 1.18159 0.79902 0.80015 0.87450 1.90862 1.57101 1.63528 1.33511 1.20979 1.05367 0.89952 0.94519 1.67903 1.08770 1.36450 0.98085 1.23835 0.95711 0.92141 0.96344 1.18688 0.97385 0.92881 0.81474 1.91635 1.87289 1.87676 1.41873 1.21872 1.00912 1.04435 0.89456 1.18517 0.99541 0.87920 0.84803 1.91613 1.91677 1.73636 1.53204 1.21622 0.94281 0.99165 0.85186 1.21650 0.93573 1.00106 0.95973 0.92373 1.20922 0.97780 0.94062 0.83884 1.42889 1.65992 1.29176 1.02748 1.19076 1.26567 1.06535 0.83654 0.91583 1.25307 1.02541 1.01903 0.94956 1.69839 1.53012 1.42403 0.97776 0.85624 0.79038 0.81086 0.77263 1.21156 1.21490 1.19145 0.93143 0.90229 0.93426 0.92540 0.86976 0.89040 0.86551 0.75651 0.79024 0.92491 0.89894 0.94958 0.94104 0.80717 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.81 71.98 0.63 -2.22 16 2 C -0.08 -1.61 2.23 -10.76 -0.02 -1.63 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.90 5.36 30.67 0.16 -1.74 16 5 C 0.10 1.65 6.02 86.36 0.52 2.17 16 6 N -0.58 -15.89 2.97 -822.25 -2.44 -18.34 16 7 C 0.56 17.57 7.32 86.80 0.64 18.21 16 8 O -0.57 -23.69 15.67 -3.87 -0.06 -23.75 16 9 C 0.03 0.65 6.01 41.88 0.25 0.91 16 10 N -0.40 -6.18 7.26 -184.62 -1.34 -7.52 16 11 C 0.08 0.64 11.17 84.94 0.95 1.59 16 12 C 0.12 1.00 7.35 22.57 0.17 1.17 16 13 F -0.11 -0.80 17.28 44.97 0.78 -0.03 16 14 C -0.14 -1.66 10.14 22.53 0.23 -1.44 16 15 C 0.12 2.40 7.27 22.75 0.17 2.57 16 16 F -0.12 -3.39 16.24 44.97 0.73 -2.66 16 17 C 0.12 3.87 5.51 86.36 0.48 4.34 16 18 C -0.09 -2.82 1.92 -10.71 -0.02 -2.84 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.16 6.09 5.41 86.38 0.47 6.55 16 21 N -0.76 -37.87 5.18 -343.47 -1.78 -39.65 16 22 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 23 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 24 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 25 N -0.98 -64.88 13.97 21.65 0.30 -64.58 16 26 Si 0.94 50.03 27.74 68.60 1.90 51.93 16 27 H -0.28 -15.19 7.11 99.48 0.71 -14.48 16 28 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 29 H -0.27 -13.49 6.52 99.48 0.65 -12.84 16 30 H 0.05 1.15 6.30 -2.39 -0.02 1.14 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 1.71 4.56 -2.39 -0.01 1.70 16 37 H 0.23 -0.16 8.06 -2.91 -0.02 -0.19 16 38 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.06 2.32 6.23 -2.39 -0.01 2.31 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.55 6.15 -2.39 -0.01 1.54 16 43 H 0.36 18.08 4.75 -92.70 -0.44 17.64 16 44 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 Total: -1.00 -81.16 361.29 4.60 -76.56 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.55 Total: 15.96 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.96 Total: 12.07 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -5.26 Total: -130.08 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 1.51 Total: -2.69 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.90 Total: 51.93 kcal Total: -81.16 4.60 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.011 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds