Wall clock time and date at job start Wed Apr 1 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46166 * 2 1 4 4 C 1.53045 * 109.46228 * 240.02813 * 2 1 3 5 5 C 1.53186 * 109.30935 * 301.35948 * 4 2 1 6 6 N 1.46928 * 108.77965 * 305.36509 * 5 4 2 7 7 C 1.34779 * 120.62835 * 233.59452 * 6 5 4 8 8 O 1.21554 * 119.99551 * 172.14669 * 7 6 5 9 9 C 1.47875 * 120.00264 * 352.14323 * 7 6 5 10 10 N 1.32844 * 119.72111 * 352.14519 * 9 7 6 11 11 C 1.31374 * 121.68973 * 179.74752 * 10 9 7 12 12 C 1.38998 * 120.92974 * 0.53094 * 11 10 9 13 13 F 1.35102 * 120.32814 * 179.76337 * 12 11 10 14 14 C 1.38722 * 119.34498 * 359.73956 * 12 11 10 15 15 C 1.38837 * 118.44985 * 359.97438 * 14 12 11 16 16 F 1.35093 * 120.48964 * 180.02562 * 15 14 12 17 17 C 1.46928 * 118.73856 * 53.60279 * 6 5 4 18 18 C 1.53038 * 109.45141 * 119.96570 * 2 1 3 19 19 H 1.08996 * 109.50293 * 178.60190 * 18 2 1 20 20 C 1.53007 * 109.49670 * 298.70098 * 18 2 1 21 21 N 1.46499 * 109.47216 * 184.83444 * 20 18 2 22 22 C 1.36933 * 120.00429 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99559 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00329 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99925 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99912 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47312 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46888 * 120.00120 * 26 24 22 29 29 H 1.48493 * 109.47304 * 239.99833 * 26 24 22 30 30 H 1.08996 * 109.46996 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47185 * 299.97269 * 1 2 3 32 32 H 1.09001 * 109.46465 * 59.97139 * 1 2 3 33 33 H 1.08991 * 109.49519 * 181.40443 * 4 2 1 34 34 H 1.09000 * 109.49153 * 61.30800 * 4 2 1 35 35 H 1.08999 * 109.58943 * 185.57449 * 5 4 2 36 36 H 1.08999 * 109.70802 * 65.22054 * 5 4 2 37 37 H 1.07999 * 119.53456 * 180.27000 * 11 10 9 38 38 H 1.07999 * 120.77865 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.57849 * 66.18755 * 17 6 5 40 40 H 1.09003 * 109.58680 * 186.60582 * 17 6 5 41 41 H 1.08997 * 109.46898 * 304.83437 * 20 18 2 42 42 H 1.09001 * 109.46871 * 64.83487 * 20 18 2 43 43 H 0.97003 * 119.99695 * 359.97438 * 21 20 18 44 44 H 0.96997 * 119.99518 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 -1.2500 5 6 1.4994 -2.1541 -1.2642 6 7 1.8620 -2.8089 0.0002 7 6 2.5149 -3.9880 0.0002 8 8 2.9351 -4.4499 1.0431 9 6 2.7201 -4.7197 -1.2683 10 7 2.1270 -4.2933 -2.3779 11 6 2.2863 -4.9107 -3.5266 12 6 3.0789 -6.0485 -3.6222 13 9 3.2304 -6.6766 -4.8087 14 6 3.7133 -6.5325 -2.4874 15 6 3.5314 -5.8560 -1.2887 16 9 4.1301 -6.2910 -0.1585 17 6 1.4991 -2.1540 1.2644 18 6 2.0397 -0.7208 1.2501 19 1 3.1293 -0.7430 1.2385 20 6 1.5566 0.0195 2.4990 21 7 2.1387 -0.6022 3.6910 22 6 1.8475 -0.1060 4.9336 23 1 1.1883 0.7435 5.0349 24 6 2.3995 -0.6947 6.0630 25 7 3.2033 -1.7296 5.9395 26 14 2.0016 -0.0181 7.7581 27 1 1.0807 1.1392 7.6255 28 1 1.3523 -1.0760 8.5733 29 1 3.2551 0.4197 8.4231 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3632 0.5143 -0.8898 33 1 3.1296 -0.7431 -1.2381 34 1 1.6960 -0.1935 -2.1398 35 1 1.9379 -2.7019 -2.0983 36 1 0.4145 -2.1368 -1.3686 37 1 1.7910 -4.5313 -4.4081 38 1 4.3341 -7.4149 -2.5352 39 1 0.4141 -2.1344 1.3673 40 1 1.9375 -2.7018 2.0986 41 1 1.8666 1.0631 2.4454 42 1 0.4694 -0.0342 2.5554 43 1 2.7305 -1.3654 3.6000 44 1 3.5893 -2.1408 6.7287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132924767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:09 Heat of formation + Delta-G solvation = -76.631187 kcal Electronic energy + Delta-G solvation = -29973.046139 eV Core-core repulsion = 25561.725860 eV Total energy + Delta-G solvation = -4411.320279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.27762 -50.24863 -42.07391 -40.65912 -39.21859 -36.66149 -35.06190 -33.67620 -33.48771 -32.28068 -31.34010 -28.72855 -27.52825 -26.37244 -25.39788 -24.87556 -24.63240 -22.56485 -21.80668 -19.89554 -19.51797 -19.26859 -18.95192 -18.23266 -17.60732 -17.27870 -17.12735 -16.80188 -16.63805 -16.44487 -16.24036 -15.89260 -15.70724 -15.57907 -15.31210 -14.99432 -14.72795 -14.61941 -14.38660 -14.30764 -13.98710 -13.79354 -13.65900 -13.05210 -12.88643 -12.86688 -12.62916 -12.46117 -12.10562 -12.01414 -11.90802 -11.78062 -11.51776 -11.44529 -11.21961 -11.12654 -10.94995 -10.25345 -10.21020 -9.58067 -9.01183 -7.94736 -5.25506 -0.94141 -0.39870 1.38337 1.44407 1.46776 1.56899 1.71534 2.28273 2.42943 2.54866 2.71879 2.78241 3.27418 3.36601 3.38074 3.66870 3.74160 3.84840 3.90352 4.12658 4.16355 4.21882 4.32628 4.34488 4.49229 4.56668 4.58472 4.65576 4.78560 4.82493 4.89510 4.96158 5.06512 5.11834 5.19909 5.25260 5.30318 5.33218 5.43547 5.48360 5.58968 5.69357 6.10949 6.25671 6.34859 6.93849 7.30851 8.07424 8.29765 9.28998 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002951 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.719145 B = 9484.577695 C =11019.912892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.067 3.933 6 N -0.582 5.582 7 C 0.549 3.451 8 O -0.571 6.571 9 C 0.024 3.976 10 N -0.394 5.394 11 C 0.081 3.919 12 C 0.121 3.879 13 F -0.106 7.106 14 C -0.142 4.142 15 C 0.122 3.878 16 F -0.118 7.118 17 C 0.127 3.873 18 C -0.089 4.089 19 H 0.047 0.953 20 C 0.160 3.840 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.261 1.261 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.193 0.807 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.024 0.976 42 H 0.032 0.968 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -5.628 -30.765 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.054 4.054 6 N -0.312 5.312 7 C 0.336 3.664 8 O -0.450 6.450 9 C -0.112 4.112 10 N -0.105 5.105 11 C -0.082 4.082 12 C 0.099 3.901 13 F -0.084 7.084 14 C -0.168 4.168 15 C 0.099 3.901 16 F -0.096 7.096 17 C 0.004 3.996 18 C -0.109 4.109 19 H 0.065 0.935 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.174 0.826 36 H 0.102 0.898 37 H 0.247 0.753 38 H 0.210 0.790 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.593 -5.017 -30.008 30.769 hybrid contribution 1.160 -1.124 1.859 2.463 sum -3.433 -6.141 -28.149 29.015 Atomic orbital electron populations 1.21941 0.93852 1.02062 1.02560 1.21100 0.97076 0.99219 0.92625 0.90293 1.21989 1.00254 0.95478 0.98380 1.23350 1.02228 0.93735 0.86061 1.48073 1.54672 1.19391 1.09080 1.18224 0.78728 0.82036 0.87404 1.90911 1.51173 1.69006 1.33918 1.21079 1.00372 0.95818 0.93905 1.67741 1.18254 1.26813 0.97651 1.24003 0.95850 0.90821 0.97502 1.18683 0.97064 0.93099 0.81245 1.91637 1.93567 1.80810 1.42394 1.21899 1.02652 1.03163 0.89094 1.18555 0.94113 0.93694 0.83741 1.91634 1.80610 1.88265 1.49134 1.21499 0.99736 0.92995 0.85369 1.21539 0.99186 0.94119 0.96061 0.93485 1.20867 0.96067 0.94778 0.84902 1.42718 1.57094 1.37295 1.02081 1.19708 1.22350 1.10514 0.84926 0.90197 1.25684 1.00619 0.99011 1.02027 1.69888 1.37391 1.26033 1.29045 0.85008 0.77176 0.77597 0.79584 1.18517 1.22156 1.22054 0.92706 0.93313 0.89990 0.93021 0.87011 0.82606 0.89751 0.75281 0.79020 0.90365 0.93173 0.95780 0.94983 0.79882 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.12 71.98 0.58 -2.45 16 2 C -0.08 -1.93 2.71 -10.76 -0.03 -1.96 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.12 -2.30 5.63 30.67 0.17 -2.13 16 5 C 0.07 1.34 5.42 86.36 0.47 1.80 16 6 N -0.58 -17.87 2.97 -822.27 -2.44 -20.32 16 7 C 0.55 19.07 7.65 86.79 0.66 19.73 16 8 O -0.57 -26.13 14.78 -3.88 -0.06 -26.19 16 9 C 0.02 0.60 6.61 41.88 0.28 0.87 16 10 N -0.39 -6.25 6.07 -184.61 -1.12 -7.37 16 11 C 0.08 0.64 11.17 84.94 0.95 1.59 16 12 C 0.12 1.10 7.35 22.57 0.17 1.27 16 13 F -0.11 -0.84 17.28 44.97 0.78 -0.06 16 14 C -0.14 -1.84 10.14 22.53 0.23 -1.61 16 15 C 0.12 2.78 7.30 22.75 0.17 2.95 16 16 F -0.12 -3.62 15.58 44.97 0.70 -2.92 16 17 C 0.13 4.67 5.06 86.36 0.44 5.11 16 18 C -0.09 -3.11 2.15 -10.72 -0.02 -3.13 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.16 6.71 5.19 86.38 0.45 7.16 16 21 N -0.75 -41.15 5.38 -343.45 -1.85 -43.00 16 22 C -0.24 -14.35 9.99 84.03 0.84 -13.51 16 23 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 24 C -0.08 -4.98 5.50 84.86 0.47 -4.52 16 25 N -0.97 -64.32 13.06 21.65 0.28 -64.04 16 26 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 29 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 30 H 0.05 1.16 4.98 -2.39 -0.01 1.15 16 31 H 0.05 1.14 6.57 -2.39 -0.02 1.13 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.16 2.62 3.96 -72.86 -0.29 2.33 16 36 H 0.08 1.46 6.70 -2.39 -0.02 1.44 16 37 H 0.23 -0.27 8.06 -2.91 -0.02 -0.30 16 38 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.08 2.72 6.69 -2.38 -0.02 2.70 16 40 H 0.05 2.40 6.20 -2.39 -0.01 2.38 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.03 1.30 6.72 -2.39 -0.02 1.29 16 43 H 0.37 22.38 6.89 -92.71 -0.64 21.74 16 44 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -82.29 355.80 4.28 -78.01 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.15 Total: 24.15 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.81 Total: 11.16 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.13 Total: -134.73 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 1.48 Total: -2.98 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -82.29 4.28 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.382 kcal (2) G-P(sol) polarization free energy of solvation -82.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds