Wall clock time and date at job start Wed Apr 1 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45048 * 2 1 4 4 C 1.53042 * 109.46114 * 119.96665 * 2 1 3 5 5 C 1.53191 * 109.31149 * 181.38247 * 4 2 1 6 6 N 1.46921 * 108.89748 * 305.29612 * 5 4 2 7 7 C 1.34770 * 120.63317 * 233.67618 * 6 5 4 8 8 O 1.21551 * 119.99667 * 356.27401 * 7 6 5 9 9 C 1.47875 * 120.00436 * 176.27968 * 7 6 5 10 10 N 1.32848 * 119.72248 * 39.65724 * 9 7 6 11 11 C 1.31368 * 121.69047 * 180.02562 * 10 9 7 12 12 C 1.39000 * 120.93285 * 359.97438 * 11 10 9 13 13 F 1.35100 * 120.32628 * 180.02562 * 12 11 10 14 14 C 1.38723 * 119.34342 * 0.02562 * 12 11 10 15 15 C 1.38831 * 118.44628 * 359.72719 * 14 12 11 16 16 F 1.35102 * 120.48321 * 180.26192 * 15 14 12 17 17 C 1.47212 * 118.55230 * 53.54120 * 6 5 4 18 18 C 1.53037 * 109.45930 * 240.03814 * 2 1 3 19 19 H 1.09000 * 109.50203 * 298.56483 * 18 2 1 20 20 C 1.53001 * 109.50000 * 58.66514 * 18 2 1 21 21 N 1.46506 * 109.47271 * 185.00131 * 20 18 2 22 22 C 1.36933 * 119.99676 * 180.02562 * 21 20 18 23 23 H 1.07992 * 120.00611 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99270 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00546 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99455 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47146 * 90.00182 * 26 24 22 28 28 H 1.48505 * 109.46953 * 210.00079 * 26 24 22 29 29 H 1.48502 * 109.47499 * 329.99908 * 26 24 22 30 30 H 1.09007 * 109.46894 * 300.03488 * 1 2 3 31 31 H 1.09000 * 109.47074 * 60.02598 * 1 2 3 32 32 H 1.08992 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49529 * 61.43487 * 4 2 1 34 34 H 1.08994 * 109.49736 * 301.34059 * 4 2 1 35 35 H 1.09000 * 109.58482 * 65.15649 * 5 4 2 36 36 H 1.08999 * 109.58665 * 185.43500 * 5 4 2 37 37 H 1.08001 * 119.53502 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.77390 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.52710 * 186.67776 * 17 6 5 40 40 H 1.08993 * 109.67806 * 66.37180 * 17 6 5 41 41 H 1.09003 * 109.46894 * 304.99676 * 20 18 2 42 42 H 1.08999 * 109.47049 * 64.99781 * 20 18 2 43 43 H 0.96999 * 119.99407 * 359.97438 * 21 20 18 44 44 H 0.96999 * 120.00588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0707 -1.2499 0.0016 7 6 4.9644 -2.2587 0.0044 8 8 5.4161 -2.6674 1.0562 9 6 5.3955 -2.8683 -1.2720 10 7 5.6070 -2.0963 -2.3323 11 6 5.9901 -2.5967 -3.4850 12 6 6.1905 -3.9635 -3.6393 13 9 6.5850 -4.4650 -4.8301 14 6 5.9814 -4.8076 -2.5584 15 6 5.5819 -4.2498 -1.3514 16 9 5.3717 -5.0330 -0.2708 17 6 3.5713 -0.6884 -1.2643 18 6 2.0398 -0.7206 -1.2501 19 1 1.6978 -1.7555 -1.2385 20 6 1.5028 -0.0187 -2.4990 21 7 1.8917 -0.7769 -3.6908 22 6 1.5210 -0.3368 -4.9333 23 1 0.9417 0.5689 -5.0349 24 6 1.8900 -1.0550 -6.0625 25 7 2.5965 -2.1586 -5.9389 26 14 1.3838 -0.4551 -7.7576 27 1 2.4310 0.4502 -8.2954 28 1 1.2209 -1.6184 -8.6661 29 1 0.0972 0.2799 -7.6588 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2208 2.1398 35 1 3.9143 0.3409 1.3673 36 1 3.9417 -1.2825 2.0998 37 1 6.1524 -1.9368 -4.3243 38 1 6.1306 -5.8730 -2.6523 39 1 3.9416 -1.2844 -2.0985 40 1 3.9143 0.3408 -1.3699 41 1 0.4157 0.0393 -2.4441 42 1 1.9178 0.9875 -2.5570 43 1 2.4123 -1.5902 -3.5995 44 1 2.8540 -2.6607 -6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132924768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:13 Heat of formation + Delta-G solvation = -69.492093 kcal Electronic energy + Delta-G solvation = -30804.497264 eV Core-core repulsion = 26393.486559 eV Total energy + Delta-G solvation = -4411.010704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.13992 -49.11043 -40.77966 -39.35877 -37.92731 -34.83641 -33.90076 -32.60841 -31.94576 -31.01922 -29.77855 -28.17989 -25.56809 -25.11014 -24.02290 -23.23113 -22.89450 -21.28257 -20.28507 -19.47481 -18.33087 -18.21978 -17.50158 -17.01938 -16.52266 -16.04972 -15.95820 -15.43838 -15.15706 -15.01223 -14.89003 -14.50266 -14.41775 -14.04625 -13.81605 -13.66459 -13.46003 -13.29357 -12.96564 -12.92301 -12.68237 -12.46685 -12.40880 -11.91146 -11.65869 -11.49307 -11.02188 -10.92557 -10.84966 -10.66389 -10.39650 -10.33068 -10.23670 -9.97694 -9.92968 -9.70994 -9.43103 -9.00919 -8.90070 -8.51996 -6.94241 -5.80134 -3.07801 0.35246 0.75075 2.52020 2.84472 3.39465 3.40895 3.47129 3.47852 3.56715 3.90167 4.04244 4.37699 4.49197 4.55295 4.80931 4.88371 4.90860 4.94293 5.14845 5.25272 5.37163 5.43158 5.54530 5.56688 5.60752 5.68604 5.70430 5.74283 5.89454 5.94682 5.99153 6.03065 6.16923 6.23009 6.30057 6.36020 6.43411 6.46761 6.65960 6.78127 6.86821 7.34627 7.43612 7.67709 8.08124 8.38444 9.50240 10.06900 10.41913 11.42523 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.005779 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.212893 B = 4843.946122 C = 7882.702220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.589 5.589 7 C 0.579 3.421 8 O -0.533 6.533 9 C 0.037 3.963 10 N -0.390 5.390 11 C 0.089 3.911 12 C 0.113 3.887 13 F -0.113 7.113 14 C -0.156 4.156 15 C 0.129 3.871 16 F -0.108 7.108 17 C 0.106 3.894 18 C -0.106 4.106 19 H 0.071 0.929 20 C 0.158 3.842 21 N -0.731 5.731 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.187 0.813 38 H 0.165 0.835 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.021 0.979 43 H 0.381 0.619 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -0.757 11.450 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.011 4.011 6 N -0.320 5.320 7 C 0.365 3.635 8 O -0.409 6.409 9 C -0.101 4.101 10 N -0.100 5.100 11 C -0.073 4.073 12 C 0.091 3.909 13 F -0.092 7.092 14 C -0.183 4.183 15 C 0.106 3.894 16 F -0.086 7.086 17 C -0.016 4.016 18 C -0.126 4.126 19 H 0.090 0.910 20 C 0.030 3.970 21 N -0.375 5.375 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.204 0.796 38 H 0.183 0.817 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.215 0.785 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.848 -0.014 12.015 12.956 hybrid contribution -0.080 -1.161 -1.356 1.787 sum 4.768 -1.175 10.659 11.736 Atomic orbital electron populations 1.21881 0.94956 1.01932 1.01714 1.21109 0.95977 0.99439 0.93909 0.90943 1.21987 0.94596 1.01583 0.98425 1.21659 0.94114 0.99053 0.86308 1.48070 1.41626 1.33644 1.08646 1.17543 0.79620 0.79593 0.86783 1.90802 1.56261 1.62528 1.31327 1.21289 1.04247 0.89481 0.95130 1.67923 1.07329 1.36793 0.97993 1.23193 0.96008 0.91857 0.96249 1.18712 0.97795 0.92921 0.81508 1.91589 1.87284 1.87652 1.42628 1.21571 1.03235 1.02631 0.90901 1.18162 0.99063 0.88080 0.84075 1.91601 1.91582 1.73389 1.52065 1.22380 0.93567 1.00431 0.85207 1.21780 0.94707 1.00660 0.95413 0.91050 1.20738 0.96927 0.94120 0.85183 1.42357 1.65405 1.28916 1.00855 1.19208 1.27611 1.06192 0.83710 0.91258 1.24672 1.00959 0.97496 0.97600 1.69633 1.42866 1.17244 1.28376 0.86238 0.78076 0.77451 0.84692 1.21766 1.21881 1.20898 0.93178 0.91643 0.92824 0.91527 0.90679 0.91174 0.89112 0.79623 0.81727 0.86443 0.90857 0.95411 0.96131 0.78542 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.09 -1.05 2.23 -90.58 -0.20 -1.26 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 5 C 0.11 1.37 6.41 -3.71 -0.02 1.34 16 6 N -0.59 -8.84 2.98 -173.65 -0.52 -9.36 16 7 C 0.58 9.69 7.33 -12.32 -0.09 9.60 16 8 O -0.53 -9.86 15.65 5.32 0.08 -9.77 16 9 C 0.04 0.60 6.02 -82.96 -0.50 0.10 16 10 N -0.39 -6.18 7.26 -9.70 -0.07 -6.25 16 11 C 0.09 1.30 11.17 -17.47 -0.20 1.11 16 12 C 0.11 1.55 7.35 -39.12 -0.29 1.26 16 13 F -0.11 -1.57 17.28 2.25 0.04 -1.53 16 14 C -0.16 -1.99 10.14 -39.18 -0.40 -2.39 16 15 C 0.13 1.91 7.27 -38.84 -0.28 1.63 16 16 F -0.11 -1.66 16.23 2.25 0.04 -1.62 16 17 C 0.11 1.67 5.12 -3.55 -0.02 1.65 16 18 C -0.11 -1.66 1.92 -90.50 -0.17 -1.83 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.16 2.98 5.41 -4.04 -0.02 2.96 16 21 N -0.73 -17.36 5.38 -59.90 -0.32 -17.69 16 22 C -0.24 -6.27 9.99 -15.06 -0.15 -6.42 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.22 13.06 55.49 0.72 -25.49 16 26 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.16 7.02 -51.93 -0.36 0.79 16 37 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.10 3.80 -51.93 -0.20 1.90 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 9.52 6.90 -40.82 -0.28 9.24 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -30.01 364.43 -7.50 -37.51 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.69 Total: 7.73 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.25 Total: 4.38 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.19 Total: -58.79 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.01 -7.50 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.981 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds