Wall clock time and date at job start Wed Apr 1 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45048 * 2 1 4 4 C 1.53042 * 109.46114 * 119.96665 * 2 1 3 5 5 C 1.53191 * 109.31149 * 181.38247 * 4 2 1 6 6 N 1.46921 * 108.89748 * 305.29612 * 5 4 2 7 7 C 1.34770 * 120.63317 * 233.67618 * 6 5 4 8 8 O 1.21551 * 119.99667 * 356.27401 * 7 6 5 9 9 C 1.47875 * 120.00436 * 176.27968 * 7 6 5 10 10 N 1.32848 * 119.72248 * 39.65724 * 9 7 6 11 11 C 1.31368 * 121.69047 * 180.02562 * 10 9 7 12 12 C 1.39000 * 120.93285 * 359.97438 * 11 10 9 13 13 F 1.35100 * 120.32628 * 180.02562 * 12 11 10 14 14 C 1.38723 * 119.34342 * 0.02562 * 12 11 10 15 15 C 1.38831 * 118.44628 * 359.72719 * 14 12 11 16 16 F 1.35102 * 120.48321 * 180.26192 * 15 14 12 17 17 C 1.47212 * 118.55230 * 53.54120 * 6 5 4 18 18 C 1.53037 * 109.45930 * 240.03814 * 2 1 3 19 19 H 1.09000 * 109.50203 * 298.56483 * 18 2 1 20 20 C 1.53001 * 109.50000 * 58.66514 * 18 2 1 21 21 N 1.46506 * 109.47271 * 185.00131 * 20 18 2 22 22 C 1.36933 * 119.99676 * 180.02562 * 21 20 18 23 23 H 1.07992 * 120.00611 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99270 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00546 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99455 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47146 * 90.00182 * 26 24 22 28 28 H 1.48505 * 109.46953 * 210.00079 * 26 24 22 29 29 H 1.48502 * 109.47499 * 329.99908 * 26 24 22 30 30 H 1.09007 * 109.46894 * 300.03488 * 1 2 3 31 31 H 1.09000 * 109.47074 * 60.02598 * 1 2 3 32 32 H 1.08992 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49529 * 61.43487 * 4 2 1 34 34 H 1.08994 * 109.49736 * 301.34059 * 4 2 1 35 35 H 1.09000 * 109.58482 * 65.15649 * 5 4 2 36 36 H 1.08999 * 109.58665 * 185.43500 * 5 4 2 37 37 H 1.08001 * 119.53502 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.77390 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.52710 * 186.67776 * 17 6 5 40 40 H 1.08993 * 109.67806 * 66.37180 * 17 6 5 41 41 H 1.09003 * 109.46894 * 304.99676 * 20 18 2 42 42 H 1.08999 * 109.47049 * 64.99781 * 20 18 2 43 43 H 0.96999 * 119.99407 * 359.97438 * 21 20 18 44 44 H 0.96999 * 120.00588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0707 -1.2499 0.0016 7 6 4.9644 -2.2587 0.0044 8 8 5.4161 -2.6674 1.0562 9 6 5.3955 -2.8683 -1.2720 10 7 5.6070 -2.0963 -2.3323 11 6 5.9901 -2.5967 -3.4850 12 6 6.1905 -3.9635 -3.6393 13 9 6.5850 -4.4650 -4.8301 14 6 5.9814 -4.8076 -2.5584 15 6 5.5819 -4.2498 -1.3514 16 9 5.3717 -5.0330 -0.2708 17 6 3.5713 -0.6884 -1.2643 18 6 2.0398 -0.7206 -1.2501 19 1 1.6978 -1.7555 -1.2385 20 6 1.5028 -0.0187 -2.4990 21 7 1.8917 -0.7769 -3.6908 22 6 1.5210 -0.3368 -4.9333 23 1 0.9417 0.5689 -5.0349 24 6 1.8900 -1.0550 -6.0625 25 7 2.5965 -2.1586 -5.9389 26 14 1.3838 -0.4551 -7.7576 27 1 2.4310 0.4502 -8.2954 28 1 1.2209 -1.6184 -8.6661 29 1 0.0972 0.2799 -7.6588 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2208 2.1398 35 1 3.9143 0.3409 1.3673 36 1 3.9417 -1.2825 2.0998 37 1 6.1524 -1.9368 -4.3243 38 1 6.1306 -5.8730 -2.6523 39 1 3.9416 -1.2844 -2.0985 40 1 3.9143 0.3408 -1.3699 41 1 0.4157 0.0393 -2.4441 42 1 1.9178 0.9875 -2.5570 43 1 2.4123 -1.5902 -3.5995 44 1 2.8540 -2.6607 -6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132924768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:13 Heat of formation + Delta-G solvation = -86.509223 kcal Electronic energy + Delta-G solvation = -30805.235182 eV Core-core repulsion = 26393.486559 eV Total energy + Delta-G solvation = -4411.748623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.31841 -50.23903 -41.98178 -40.52730 -39.20492 -36.47219 -35.16881 -33.87910 -33.39973 -32.27267 -31.30669 -29.31788 -27.18088 -26.24692 -25.21779 -24.87110 -24.01241 -22.59248 -21.56861 -20.61838 -19.50078 -19.38509 -19.05263 -18.59566 -17.72818 -17.23595 -17.11865 -16.68033 -16.59059 -16.31980 -16.19148 -15.66568 -15.60087 -15.51310 -15.28194 -15.03483 -14.57923 -14.56098 -14.35120 -14.17428 -13.98409 -13.79295 -13.63186 -13.05652 -12.98844 -12.78789 -12.64193 -12.60721 -12.14276 -11.99437 -11.91426 -11.77822 -11.62723 -11.38563 -11.16648 -11.09773 -10.86427 -10.62436 -10.20180 -9.72357 -8.89371 -7.86742 -5.13894 -0.82229 -0.36335 1.27194 1.51612 1.52320 1.59599 1.67968 2.21073 2.41886 2.60954 2.75713 2.83993 3.26220 3.39802 3.46710 3.66952 3.77323 3.85063 3.85781 4.03354 4.14473 4.22696 4.28228 4.32401 4.46614 4.55684 4.59352 4.64876 4.79721 4.81323 4.90033 4.92553 5.02898 5.08300 5.13480 5.19565 5.23474 5.27467 5.46105 5.50871 5.56962 5.59832 6.11262 6.24608 6.34297 6.83083 7.41968 8.15579 8.40360 9.35486 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.005779 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.212893 B = 4843.946122 C = 7882.702220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.086 0.914 4 C -0.118 4.118 5 C 0.105 3.895 6 N -0.584 5.584 7 C 0.573 3.427 8 O -0.557 6.557 9 C 0.020 3.980 10 N -0.401 5.401 11 C 0.079 3.921 12 C 0.114 3.886 13 F -0.112 7.112 14 C -0.139 4.139 15 C 0.121 3.879 16 F -0.112 7.112 17 C 0.111 3.889 18 C -0.094 4.094 19 H 0.051 0.949 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.064 4.064 25 N -0.957 5.957 26 Si 0.962 3.038 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.276 1.276 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.191 0.809 38 H 0.198 0.802 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.372 0.628 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 0.052 12.189 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.016 4.016 6 N -0.314 5.314 7 C 0.359 3.641 8 O -0.436 6.436 9 C -0.118 4.118 10 N -0.112 5.112 11 C -0.083 4.083 12 C 0.092 3.908 13 F -0.090 7.090 14 C -0.166 4.166 15 C 0.098 3.902 16 F -0.091 7.091 17 C -0.011 4.011 18 C -0.114 4.114 19 H 0.069 0.931 20 C 0.032 3.968 21 N -0.384 5.384 22 C -0.374 4.374 23 H 0.090 0.910 24 C -0.257 4.257 25 N -0.607 5.607 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.201 1.201 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.208 0.792 38 H 0.216 0.784 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.204 0.796 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.211 0.838 12.781 13.482 hybrid contribution 0.089 -1.381 -1.576 2.097 sum 4.300 -0.542 11.205 12.014 Atomic orbital electron populations 1.21848 0.94216 1.01658 1.02446 1.21098 0.96509 0.99734 0.92529 0.89566 1.21944 0.93481 1.01163 0.99022 1.21919 0.94984 0.99901 0.84829 1.48139 1.40935 1.33016 1.09338 1.17717 0.79796 0.79831 0.86752 1.90775 1.57317 1.63399 1.32063 1.21353 1.05130 0.90228 0.95125 1.67896 1.07856 1.37156 0.98263 1.23351 0.96041 0.92706 0.96154 1.18680 0.97688 0.92675 0.81783 1.91594 1.87259 1.87559 1.42621 1.21815 1.01208 1.04071 0.89458 1.18266 0.99542 0.87764 0.84623 1.91587 1.91708 1.73354 1.52414 1.22218 0.93594 1.00177 0.85120 1.21637 0.94479 0.99564 0.95724 0.93059 1.20861 0.97056 0.93995 0.84847 1.42520 1.65249 1.29001 1.01594 1.19531 1.26860 1.05992 0.84969 0.91027 1.25345 1.01729 0.98017 1.00620 1.69766 1.44063 1.18199 1.28671 0.85314 0.77923 0.76641 0.80864 1.21537 1.22600 1.20100 0.90553 0.92785 0.93622 0.92687 0.87360 0.89100 0.89451 0.79223 0.78444 0.88420 0.90415 0.95158 0.95670 0.79587 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.82 71.98 0.63 -2.41 16 2 C -0.08 -1.79 2.23 -10.77 -0.02 -1.81 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.12 -2.33 5.36 30.67 0.16 -2.16 16 5 C 0.10 2.39 6.41 86.36 0.55 2.94 16 6 N -0.58 -17.24 2.98 -821.58 -2.45 -19.69 16 7 C 0.57 19.32 7.33 86.80 0.64 19.95 16 8 O -0.56 -20.73 15.65 -3.88 -0.06 -20.79 16 9 C 0.02 0.65 6.02 41.88 0.25 0.90 16 10 N -0.40 -12.98 7.26 -184.61 -1.34 -14.32 16 11 C 0.08 2.37 11.17 84.95 0.95 3.32 16 12 C 0.11 3.08 7.35 22.57 0.17 3.25 16 13 F -0.11 -3.02 17.28 44.97 0.78 -2.24 16 14 C -0.14 -3.41 10.14 22.53 0.23 -3.18 16 15 C 0.12 3.57 7.27 22.75 0.17 3.73 16 16 F -0.11 -3.43 16.23 44.97 0.73 -2.70 16 17 C 0.11 3.48 5.12 86.31 0.44 3.92 16 18 C -0.09 -2.89 1.92 -10.72 -0.02 -2.91 16 19 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 20 C 0.16 5.91 5.41 86.38 0.47 6.38 16 21 N -0.74 -35.36 5.38 -343.44 -1.85 -37.21 16 22 C -0.24 -12.80 9.99 84.04 0.84 -11.96 16 23 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 25 N -0.96 -54.29 13.06 21.65 0.28 -54.00 16 26 Si 0.96 44.39 29.55 68.60 2.03 46.41 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.05 1.26 6.29 -2.39 -0.02 1.25 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.11 7.02 -2.39 -0.02 2.09 16 37 H 0.19 5.35 8.06 -2.91 -0.02 5.32 16 38 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.10 3.56 3.80 -2.39 -0.01 3.55 16 40 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.03 1.13 6.14 -2.39 -0.01 1.12 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.37 18.96 6.90 -92.71 -0.64 18.32 16 44 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -64.13 364.43 4.45 -59.68 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.41 Total: 27.92 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 5.92 Total: 16.94 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -5.36 Total: -125.22 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 1.51 Total: -4.94 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.13 4.45 -59.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.825 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds