Wall clock time and date at job start Wed Apr 1 2020 00:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46130 * 2 1 4 4 C 1.53039 * 109.44631 * 119.96500 * 2 1 3 5 5 C 1.53193 * 109.31222 * 58.65116 * 4 2 1 6 6 N 1.46921 * 108.77923 * 54.63313 * 5 4 2 7 7 C 1.34769 * 120.63592 * 126.37191 * 6 5 4 8 8 O 1.21551 * 120.00504 * 176.23127 * 7 6 5 9 9 C 1.47880 * 119.99783 * 356.22827 * 7 6 5 10 10 N 1.32846 * 119.72086 * 39.97724 * 9 7 6 11 11 C 1.31369 * 121.68924 * 179.74596 * 10 9 7 12 12 C 1.39009 * 120.93031 * 0.53519 * 11 10 9 13 13 F 1.35102 * 120.32451 * 179.75761 * 12 11 10 14 14 C 1.38721 * 119.34402 * 359.73551 * 12 11 10 15 15 C 1.38834 * 118.44675 * 0.02562 * 14 12 11 16 16 F 1.35097 * 120.48218 * 180.02562 * 15 14 12 17 17 C 1.46933 * 118.73391 * 306.39234 * 6 5 4 18 18 C 1.53036 * 109.45688 * 240.02567 * 2 1 3 19 19 H 1.09002 * 109.49697 * 181.40903 * 18 2 1 20 20 C 1.52997 * 109.49817 * 61.34788 * 18 2 1 21 21 N 1.46500 * 109.47451 * 175.06343 * 20 18 2 22 22 C 1.36935 * 120.00273 * 179.97438 * 21 20 18 23 23 H 1.08007 * 120.00124 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00288 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00696 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99861 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47090 * 89.99718 * 26 24 22 28 28 H 1.48499 * 109.46962 * 209.99909 * 26 24 22 29 29 H 1.48501 * 109.47094 * 329.99951 * 26 24 22 30 30 H 1.08997 * 109.47389 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46718 * 299.97123 * 1 2 3 32 32 H 1.09004 * 109.47021 * 59.96866 * 1 2 3 33 33 H 1.09006 * 109.49741 * 178.59600 * 4 2 1 34 34 H 1.08999 * 109.50464 * 298.69448 * 4 2 1 35 35 H 1.09001 * 109.58924 * 174.41823 * 5 4 2 36 36 H 1.08997 * 109.58539 * 294.70019 * 5 4 2 37 37 H 1.08001 * 119.53084 * 180.27095 * 11 10 9 38 38 H 1.07994 * 120.77586 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.58417 * 293.81762 * 17 6 5 40 40 H 1.09004 * 109.58117 * 173.39796 * 17 6 5 41 41 H 1.09007 * 109.46785 * 295.05841 * 20 18 2 42 42 H 1.08995 * 109.47524 * 55.05870 * 20 18 2 43 43 H 0.97000 * 119.99726 * 359.97438 * 21 20 18 44 44 H 0.96996 * 120.00981 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4990 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5155 -3.9876 0.0002 8 8 2.7497 -4.5528 -1.0501 9 6 2.9478 -4.5932 1.2782 10 7 2.1477 -4.5379 2.3372 11 6 2.4906 -5.0672 3.4896 12 6 3.7179 -5.7003 3.6481 13 9 4.0601 -6.2362 4.8402 14 6 4.5876 -5.7769 2.5701 15 6 4.1962 -5.2129 1.3633 16 9 5.0107 -5.2643 0.2867 17 6 1.4992 -2.1541 -1.2641 18 6 2.0398 -0.7209 -1.2500 19 1 3.1295 -0.7432 -1.2381 20 6 1.5578 0.0198 -2.4989 21 7 2.1421 -0.6006 -3.6906 22 6 1.8513 -0.1044 -4.9333 23 1 1.1908 0.7442 -5.0350 24 6 2.4052 -0.6918 -6.0623 25 7 2.1262 -0.2146 -7.2568 26 14 3.5469 -2.1599 -5.8865 27 1 2.7516 -3.4133 -5.9288 28 1 4.5292 -2.1591 -7.0002 29 1 4.2674 -2.0743 -4.5909 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1293 -0.7431 1.2385 34 1 1.6955 -0.1934 2.1399 35 1 1.9374 -2.7018 2.0985 36 1 0.4143 -2.1345 1.3698 37 1 1.8111 -5.0058 4.3269 38 1 5.5470 -6.2631 2.6675 39 1 0.4143 -2.1345 -1.3673 40 1 1.9378 -2.7019 -2.0982 41 1 0.4707 -0.0349 -2.5569 42 1 1.8667 1.0636 -2.4442 43 1 2.7349 -1.3629 -3.5993 44 1 2.5135 -0.6249 -8.0457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132924769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:17 Heat of formation + Delta-G solvation = -60.158277 kcal Electronic energy + Delta-G solvation = -30149.095615 eV Core-core repulsion = 25738.489655 eV Total energy + Delta-G solvation = -4410.605960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.76173 -49.51719 -41.21064 -39.84282 -38.13800 -35.17285 -33.78036 -33.00708 -31.97990 -31.50927 -30.20779 -27.81683 -26.35952 -25.36008 -24.59295 -24.00818 -22.89320 -21.16843 -20.78530 -18.88702 -18.83425 -18.57606 -17.61685 -17.37077 -16.97345 -16.50383 -16.35874 -15.91066 -15.58167 -15.27568 -15.09747 -14.98342 -14.90196 -14.26171 -14.05385 -13.88337 -13.81460 -13.57307 -13.32348 -13.02406 -12.97309 -12.66937 -12.48121 -11.98650 -11.75032 -11.54144 -11.19771 -11.08421 -10.90251 -10.75496 -10.69566 -10.47094 -10.37729 -10.20042 -10.06491 -9.81030 -9.55207 -9.51490 -8.84013 -8.61546 -7.17838 -5.71760 -3.07300 -0.19815 0.17127 2.19873 2.58983 2.84770 3.06488 3.34705 3.47076 3.51851 3.55563 3.60430 3.89491 3.93458 4.32245 4.65858 4.66623 4.72155 4.79403 4.82102 4.91150 5.04678 5.08284 5.22196 5.42068 5.42783 5.56298 5.59536 5.63366 5.68353 5.76971 5.79033 5.83103 5.90645 5.98474 6.19862 6.23615 6.27448 6.40078 6.46712 6.67093 6.78579 6.80114 7.23137 7.91470 8.03741 8.47187 9.26274 9.99229 10.18298 11.46495 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003414 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.849367 B = 8198.708588 C = 9760.407066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.132 4.132 5 C 0.098 3.902 6 N -0.586 5.586 7 C 0.567 3.433 8 O -0.513 6.513 9 C 0.048 3.952 10 N -0.395 5.395 11 C 0.062 3.938 12 C 0.100 3.900 13 F -0.116 7.116 14 C -0.154 4.154 15 C 0.138 3.862 16 F -0.099 7.099 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.073 0.927 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.881 3.119 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.169 0.831 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -8.374 29.758 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.170 4.170 5 C -0.024 4.024 6 N -0.318 5.318 7 C 0.352 3.648 8 O -0.387 6.387 9 C -0.091 4.091 10 N -0.106 5.106 11 C -0.100 4.100 12 C 0.078 3.922 13 F -0.094 7.094 14 C -0.181 4.181 15 C 0.115 3.885 16 F -0.077 7.077 17 C -0.004 4.004 18 C -0.127 4.127 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.583 5.583 26 Si 0.711 3.289 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.202 0.798 38 H 0.187 0.813 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.328 -8.124 28.857 29.981 hybrid contribution 1.970 -1.592 0.216 2.542 sum 2.297 -9.717 29.073 30.740 Atomic orbital electron populations 1.21999 0.94952 1.02105 1.02043 1.21067 0.96255 0.99446 0.93566 0.90581 1.22007 1.00942 0.95440 0.98611 1.22177 1.01130 0.93128 0.85967 1.47977 1.55142 1.20018 1.08673 1.17543 0.78909 0.81755 0.86599 1.90912 1.55375 1.61402 1.31053 1.21538 0.91473 1.01034 0.95068 1.67939 1.31107 1.13584 0.97935 1.23174 0.94179 0.95912 0.96707 1.18726 0.94886 0.96817 0.81736 1.91595 1.92175 1.83236 1.42385 1.21687 1.02881 1.02667 0.90816 1.18280 0.88821 0.97104 0.84311 1.91675 1.70451 1.93457 1.52078 1.21872 1.00710 0.92911 0.84913 1.21761 1.00899 0.94235 0.95769 0.90823 1.20662 0.96451 0.94946 0.84173 1.42786 1.57404 1.37531 1.02604 1.19031 1.24182 1.12333 0.81821 0.89199 1.24646 1.00160 0.99034 0.95114 1.69698 1.48378 1.43185 0.97025 0.86610 0.81403 0.83953 0.76970 1.20815 1.21734 1.20286 0.92369 0.92959 0.91591 0.91845 0.90628 0.88228 0.90446 0.79810 0.81341 0.90309 0.88467 0.94935 0.95190 0.80558 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.11 37.16 0.30 -1.31 16 2 C -0.08 -0.96 2.71 -90.58 -0.25 -1.21 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.25 5.62 -26.61 -0.15 -1.40 16 5 C 0.10 0.99 5.55 -3.71 -0.02 0.97 16 6 N -0.59 -8.04 2.97 -173.87 -0.52 -8.56 16 7 C 0.57 8.70 7.31 -12.32 -0.09 8.61 16 8 O -0.51 -9.98 15.69 5.32 0.08 -9.89 16 9 C 0.05 0.57 6.01 -82.96 -0.50 0.07 16 10 N -0.40 -3.61 7.26 -9.70 -0.07 -3.68 16 11 C 0.06 0.38 11.17 -17.46 -0.20 0.18 16 12 C 0.10 0.63 7.35 -39.12 -0.29 0.34 16 13 F -0.12 -0.70 17.28 2.25 0.04 -0.67 16 14 C -0.15 -1.11 10.14 -39.18 -0.40 -1.51 16 15 C 0.14 1.48 7.27 -38.84 -0.28 1.19 16 16 F -0.10 -1.30 16.25 2.25 0.04 -1.27 16 17 C 0.12 1.85 5.04 -3.71 -0.02 1.83 16 18 C -0.11 -1.63 2.15 -90.51 -0.19 -1.82 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.17 3.13 5.19 -4.04 -0.02 3.11 16 21 N -0.76 -18.41 5.18 -59.91 -0.31 -18.72 16 22 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 23 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -30.06 13.97 55.49 0.78 -29.29 16 26 Si 0.88 23.41 27.74 -169.99 -4.71 18.69 16 27 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 28 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 29 H -0.28 -7.08 6.52 56.52 0.37 -6.72 16 30 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.77 6.58 -51.93 -0.34 0.43 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.91 4.56 -51.93 -0.24 0.67 16 36 H 0.08 0.72 6.70 -51.93 -0.35 0.37 16 37 H 0.19 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.08 1.19 6.69 -51.93 -0.35 0.84 16 40 H 0.10 1.88 6.23 -51.93 -0.32 1.55 16 41 H 0.03 0.61 6.73 -51.92 -0.35 0.26 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.86 4.76 -40.82 -0.19 8.66 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -34.91 355.25 -7.05 -41.96 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.37 Total: 4.12 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.35 Total: 1.94 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.12 Total: -60.25 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.08 Total: -1.93 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.71 Total: 18.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.91 -7.05 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.194 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds