Wall clock time and date at job start Wed Apr 1 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46130 * 2 1 4 4 C 1.53039 * 109.44631 * 119.96500 * 2 1 3 5 5 C 1.53193 * 109.31222 * 58.65116 * 4 2 1 6 6 N 1.46921 * 108.77923 * 54.63313 * 5 4 2 7 7 C 1.34769 * 120.63592 * 126.37191 * 6 5 4 8 8 O 1.21551 * 120.00504 * 176.23127 * 7 6 5 9 9 C 1.47880 * 119.99783 * 356.22827 * 7 6 5 10 10 N 1.32846 * 119.72086 * 39.97724 * 9 7 6 11 11 C 1.31369 * 121.68924 * 179.74596 * 10 9 7 12 12 C 1.39009 * 120.93031 * 0.53519 * 11 10 9 13 13 F 1.35102 * 120.32451 * 179.75761 * 12 11 10 14 14 C 1.38721 * 119.34402 * 359.73551 * 12 11 10 15 15 C 1.38834 * 118.44675 * 0.02562 * 14 12 11 16 16 F 1.35097 * 120.48218 * 180.02562 * 15 14 12 17 17 C 1.46933 * 118.73391 * 306.39234 * 6 5 4 18 18 C 1.53036 * 109.45688 * 240.02567 * 2 1 3 19 19 H 1.09002 * 109.49697 * 181.40903 * 18 2 1 20 20 C 1.52997 * 109.49817 * 61.34788 * 18 2 1 21 21 N 1.46500 * 109.47451 * 175.06343 * 20 18 2 22 22 C 1.36935 * 120.00273 * 179.97438 * 21 20 18 23 23 H 1.08007 * 120.00124 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00288 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00696 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99861 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47090 * 89.99718 * 26 24 22 28 28 H 1.48499 * 109.46962 * 209.99909 * 26 24 22 29 29 H 1.48501 * 109.47094 * 329.99951 * 26 24 22 30 30 H 1.08997 * 109.47389 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46718 * 299.97123 * 1 2 3 32 32 H 1.09004 * 109.47021 * 59.96866 * 1 2 3 33 33 H 1.09006 * 109.49741 * 178.59600 * 4 2 1 34 34 H 1.08999 * 109.50464 * 298.69448 * 4 2 1 35 35 H 1.09001 * 109.58924 * 174.41823 * 5 4 2 36 36 H 1.08997 * 109.58539 * 294.70019 * 5 4 2 37 37 H 1.08001 * 119.53084 * 180.27095 * 11 10 9 38 38 H 1.07994 * 120.77586 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.58417 * 293.81762 * 17 6 5 40 40 H 1.09004 * 109.58117 * 173.39796 * 17 6 5 41 41 H 1.09007 * 109.46785 * 295.05841 * 20 18 2 42 42 H 1.08995 * 109.47524 * 55.05870 * 20 18 2 43 43 H 0.97000 * 119.99726 * 359.97438 * 21 20 18 44 44 H 0.96996 * 120.00981 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4990 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5155 -3.9876 0.0002 8 8 2.7497 -4.5528 -1.0501 9 6 2.9478 -4.5932 1.2782 10 7 2.1477 -4.5379 2.3372 11 6 2.4906 -5.0672 3.4896 12 6 3.7179 -5.7003 3.6481 13 9 4.0601 -6.2362 4.8402 14 6 4.5876 -5.7769 2.5701 15 6 4.1962 -5.2129 1.3633 16 9 5.0107 -5.2643 0.2867 17 6 1.4992 -2.1541 -1.2641 18 6 2.0398 -0.7209 -1.2500 19 1 3.1295 -0.7432 -1.2381 20 6 1.5578 0.0198 -2.4989 21 7 2.1421 -0.6006 -3.6906 22 6 1.8513 -0.1044 -4.9333 23 1 1.1908 0.7442 -5.0350 24 6 2.4052 -0.6918 -6.0623 25 7 2.1262 -0.2146 -7.2568 26 14 3.5469 -2.1599 -5.8865 27 1 2.7516 -3.4133 -5.9288 28 1 4.5292 -2.1591 -7.0002 29 1 4.2674 -2.0743 -4.5909 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 3.1293 -0.7431 1.2385 34 1 1.6955 -0.1934 2.1399 35 1 1.9374 -2.7018 2.0985 36 1 0.4143 -2.1345 1.3698 37 1 1.8111 -5.0058 4.3269 38 1 5.5470 -6.2631 2.6675 39 1 0.4143 -2.1345 -1.3673 40 1 1.9378 -2.7019 -2.0982 41 1 0.4707 -0.0349 -2.5569 42 1 1.8667 1.0636 -2.4442 43 1 2.7349 -1.3629 -3.5993 44 1 2.5135 -0.6249 -8.0457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132924769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:16 Heat of formation + Delta-G solvation = -83.686283 kcal Electronic energy + Delta-G solvation = -30150.115866 eV Core-core repulsion = 25738.489655 eV Total energy + Delta-G solvation = -4411.626211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.37149 -50.27241 -42.09734 -40.73668 -39.29951 -36.83601 -35.07232 -33.70683 -33.69946 -32.40254 -31.70927 -28.81008 -27.73524 -26.38206 -25.37214 -24.83104 -24.55109 -22.59797 -21.85348 -20.13815 -19.52028 -19.40057 -19.21520 -18.47517 -17.79468 -17.27149 -17.16849 -16.82678 -16.62890 -16.48290 -16.30442 -15.97705 -15.94221 -15.56270 -15.35656 -15.00844 -14.70444 -14.59445 -14.53668 -14.42863 -14.08681 -13.89856 -13.70686 -13.41475 -13.03133 -12.88708 -12.67772 -12.50328 -12.21184 -12.05757 -11.88754 -11.80337 -11.66147 -11.47722 -11.31565 -11.13848 -11.01289 -10.72134 -10.25912 -9.70217 -9.32172 -8.07860 -5.39349 -0.90005 -0.42097 1.25692 1.31001 1.35255 1.39148 1.61615 2.10275 2.39938 2.41400 2.67806 2.82619 3.24032 3.24768 3.35062 3.48938 3.70801 3.78177 3.79700 3.93482 4.05480 4.16318 4.24998 4.25977 4.37241 4.50137 4.53598 4.57782 4.71389 4.76015 4.79872 4.89651 4.98570 5.07052 5.13600 5.19798 5.21834 5.27447 5.37652 5.43638 5.60159 5.72695 6.11185 6.17426 6.21934 6.81858 7.03152 7.80730 7.97046 9.13818 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003414 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.849367 B = 8198.708588 C = 9760.407066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.095 3.905 6 N -0.583 5.583 7 C 0.558 3.442 8 O -0.571 6.571 9 C 0.029 3.971 10 N -0.401 5.401 11 C 0.082 3.918 12 C 0.118 3.882 13 F -0.107 7.107 14 C -0.140 4.140 15 C 0.115 3.885 16 F -0.123 7.123 17 C 0.121 3.879 18 C -0.095 4.095 19 H 0.058 0.942 20 C 0.162 3.838 21 N -0.763 5.763 22 C -0.228 4.228 23 H 0.066 0.934 24 C -0.055 4.055 25 N -0.979 5.979 26 Si 0.941 3.059 27 H -0.285 1.285 28 H -0.288 1.288 29 H -0.266 1.266 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.192 0.808 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.360 0.640 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -8.897 34.740 35.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.162 4.162 5 C -0.026 4.026 6 N -0.313 5.313 7 C 0.345 3.655 8 O -0.450 6.450 9 C -0.108 4.108 10 N -0.112 5.112 11 C -0.080 4.080 12 C 0.096 3.904 13 F -0.085 7.085 14 C -0.167 4.167 15 C 0.092 3.908 16 F -0.101 7.101 17 C -0.001 4.001 18 C -0.115 4.115 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.408 5.408 22 C -0.359 4.359 23 H 0.084 0.916 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.770 3.230 27 H -0.211 1.211 28 H -0.215 1.215 29 H -0.191 1.191 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.243 0.757 38 H 0.210 0.790 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.193 0.807 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.197 -8.614 33.916 34.993 hybrid contribution 1.920 -1.409 -1.136 2.638 sum 2.117 -10.023 32.780 34.343 Atomic orbital electron populations 1.21974 0.93918 1.02195 1.02692 1.21070 0.97028 0.99465 0.92274 0.89816 1.21996 1.00577 0.94898 0.98728 1.22487 1.02233 0.93381 0.84489 1.48074 1.54431 1.19681 1.09132 1.18157 0.78166 0.81771 0.87454 1.90862 1.57630 1.63020 1.33497 1.20986 0.92526 1.02792 0.94503 1.67908 1.30562 1.14619 0.98114 1.23838 0.94379 0.93472 0.96356 1.18689 0.94539 0.95739 0.81473 1.91634 1.92092 1.82933 1.41819 1.21869 1.03922 1.01365 0.89517 1.18511 0.88709 0.98649 0.84910 1.91610 1.71094 1.93881 1.53545 1.21617 1.00605 0.92797 0.85131 1.21628 0.99890 0.93949 0.96008 0.92331 1.20871 0.96476 0.95131 0.83912 1.42894 1.57568 1.37611 1.02757 1.19077 1.22302 1.10845 0.83665 0.91589 1.25309 1.02433 1.02000 0.94949 1.69835 1.50333 1.45067 0.97794 0.85621 0.79594 0.80508 0.77272 1.21133 1.21473 1.19143 0.92533 0.90074 0.93215 0.92459 0.86988 0.86671 0.88912 0.75661 0.79031 0.89761 0.92645 0.94367 0.94968 0.80699 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.11 71.98 0.58 -2.17 16 2 C -0.08 -1.63 2.71 -10.77 -0.03 -1.66 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -1.93 5.62 30.67 0.17 -1.75 16 5 C 0.09 1.65 5.55 86.36 0.48 2.13 16 6 N -0.58 -15.84 2.97 -822.29 -2.44 -18.29 16 7 C 0.56 17.56 7.31 86.80 0.63 18.19 16 8 O -0.57 -23.68 15.69 -3.87 -0.06 -23.74 16 9 C 0.03 0.66 6.01 41.88 0.25 0.91 16 10 N -0.40 -6.18 7.26 -184.59 -1.34 -7.52 16 11 C 0.08 0.64 11.17 84.95 0.95 1.59 16 12 C 0.12 1.00 7.35 22.57 0.17 1.17 16 13 F -0.11 -0.81 17.28 44.97 0.78 -0.03 16 14 C -0.14 -1.66 10.14 22.53 0.23 -1.43 16 15 C 0.12 2.40 7.27 22.75 0.17 2.56 16 16 F -0.12 -3.39 16.25 44.97 0.73 -2.66 16 17 C 0.12 3.90 5.04 86.36 0.44 4.34 16 18 C -0.10 -2.88 2.15 -10.72 -0.02 -2.90 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.16 6.20 5.19 86.38 0.45 6.65 16 21 N -0.76 -37.95 5.18 -343.45 -1.78 -39.73 16 22 C -0.23 -13.55 10.47 84.03 0.88 -12.67 16 23 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 24 C -0.05 -3.41 5.50 84.86 0.47 -2.95 16 25 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 26 Si 0.94 50.03 27.74 68.60 1.90 51.94 16 27 H -0.28 -15.17 7.11 99.48 0.71 -14.46 16 28 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 29 H -0.27 -13.48 6.52 99.48 0.65 -12.84 16 30 H 0.06 1.06 4.98 -2.39 -0.01 1.04 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.07 6.58 -2.38 -0.02 1.06 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 1.71 4.56 -2.39 -0.01 1.69 16 36 H 0.09 1.37 6.70 -2.39 -0.02 1.36 16 37 H 0.23 -0.15 8.06 -2.91 -0.02 -0.18 16 38 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.08 2.57 6.69 -2.39 -0.02 2.55 16 40 H 0.05 2.27 6.23 -2.39 -0.01 2.25 16 41 H 0.04 1.44 6.73 -2.38 -0.02 1.43 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.36 18.10 4.76 -92.71 -0.44 17.66 16 44 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -81.11 355.25 4.46 -76.65 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.56 Total: 15.97 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.81 Total: 12.01 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -5.26 Total: -130.13 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 1.51 Total: -2.69 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.90 Total: 51.94 kcal Total: -81.11 4.46 -76.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132924769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.035 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds