Wall clock time and date at job start Tue Mar 31 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.52997 * 109.46983 * 240.00144 * 2 1 3 5 5 O 1.45194 * 109.47172 * 119.99803 * 2 1 3 6 6 C 1.34638 * 117.00218 * 60.00335 * 5 2 1 7 7 O 1.21514 * 119.99774 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00346 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99924 * 180.02562 * 8 6 5 10 10 C 1.53004 * 112.99979 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.47155 * 48.16781 * 10 9 8 12 12 O 1.21287 * 119.99725 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99701 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99755 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00085 * 35.69695 * 14 13 11 16 16 C 1.38949 * 120.00011 * 215.69699 * 14 13 11 17 17 N 1.31419 * 119.99844 * 21.50198 * 16 14 13 18 18 Si 1.86799 * 120.00366 * 201.49994 * 16 14 13 19 19 H 1.48498 * 109.46892 * 84.97889 * 18 16 14 20 20 H 1.48495 * 109.47575 * 204.98471 * 18 16 14 21 21 H 1.48507 * 109.46961 * 324.98471 * 18 16 14 22 22 C 1.46504 * 120.00231 * 0.02562 * 13 11 10 23 23 C 1.47198 * 109.47116 * 275.70684 * 22 13 11 24 24 N 9.95551 * 88.80836 * 137.29387 * 2 1 3 25 25 C 1.54037 * 113.92798 * 311.92993 * 9 8 6 26 26 O 1.44174 * 85.51749 * 91.66058 * 25 9 8 27 27 C 1.44176 * 93.34074 * 24.19475 * 26 25 9 28 28 H 1.09000 * 109.47086 * 299.99787 * 1 2 3 29 29 H 1.08995 * 109.47111 * 60.00049 * 1 2 3 30 30 H 1.09002 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47206 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47056 * 300.00403 * 3 2 1 33 33 H 1.09004 * 109.47442 * 59.99841 * 3 2 1 34 34 H 1.08996 * 109.47575 * 299.99736 * 4 2 1 35 35 H 1.08995 * 109.47354 * 59.99957 * 4 2 1 36 36 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99975 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.46679 * 288.17336 * 10 9 8 39 39 H 1.08995 * 109.47414 * 168.17153 * 10 9 8 40 40 H 0.96999 * 119.99937 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.47219 * 35.71368 * 22 13 11 42 42 H 1.08999 * 109.46853 * 155.70930 * 22 13 11 43 43 H 1.09002 * 113.86374 * 205.81206 * 25 9 8 44 44 H 1.09001 * 113.86548 * 337.51222 * 25 9 8 45 45 H 1.08994 * 113.86937 * 221.65782 * 27 26 25 46 46 H 1.09002 * 113.86531 * 89.95090 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3384 7 8 0.9511 -2.5094 0.5040 8 7 2.0682 -2.6656 2.4166 9 6 1.6751 -4.0671 2.5826 10 6 2.2341 -4.6976 3.8596 11 6 1.9762 -3.7804 5.0273 12 8 1.4014 -2.7264 4.8550 13 7 2.3842 -4.1314 6.2628 14 6 2.1492 -3.2972 7.3251 15 1 1.2371 -2.7203 7.3672 16 6 3.0843 -3.1940 8.3477 17 7 4.3356 -3.5318 8.1303 18 14 2.5630 -2.5751 10.0313 19 1 2.0250 -3.7058 10.8295 20 1 3.7363 -1.9905 10.7290 21 1 1.5130 -1.5368 9.8737 22 6 3.0790 -5.4043 6.4708 23 6 2.0900 -6.4831 6.6282 24 7 1.3230 -7.3141 6.7507 25 6 0.1712 -4.3235 2.3696 26 8 0.5245 -4.5774 0.9951 27 6 1.8851 -4.9256 1.3210 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 2.6278 -2.2367 3.0829 38 1 3.3074 -4.8518 3.7489 39 1 1.7456 -5.6560 4.0356 40 1 4.9883 -3.4601 8.8442 41 1 3.7142 -5.6163 5.6108 42 1 3.6931 -5.3405 7.3691 43 1 -0.2058 -5.1997 2.8972 44 1 -0.4510 -3.4395 2.5090 45 1 2.6224 -4.5192 0.6288 46 1 2.0315 -5.9857 1.5284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:07 Heat of formation + Delta-G solvation = -73.313664 kcal Electronic energy + Delta-G solvation = -31312.267129 eV Core-core repulsion = 27012.178224 eV Total energy + Delta-G solvation = -4300.088905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25550 -39.82158 -38.74330 -36.50917 -36.18233 -34.83574 -34.13643 -33.42034 -32.13963 -30.62419 -27.66719 -27.38439 -27.32137 -26.56935 -26.30207 -24.40802 -22.90218 -20.22369 -19.48561 -19.11998 -18.16791 -17.89498 -16.78228 -16.36652 -16.28898 -15.95098 -15.77192 -15.40418 -15.05351 -14.91001 -14.46582 -14.26384 -14.23574 -13.92681 -13.65630 -13.34755 -13.20372 -13.09931 -12.63217 -12.49498 -12.38700 -12.14666 -12.09368 -11.86521 -11.81014 -11.76474 -11.58363 -11.38817 -11.35016 -11.14936 -11.01774 -10.86742 -10.64048 -10.48482 -10.31051 -10.16131 -9.75267 -9.26846 -9.16674 -8.95242 -8.58646 -7.95081 -6.63532 -4.27024 2.40487 3.03898 3.07257 3.16465 3.18680 3.21442 3.28582 3.51790 3.87297 3.96198 4.34073 4.34719 4.51887 4.69297 4.77543 4.81471 4.88269 4.95371 4.99213 5.26216 5.42924 5.45564 5.47735 5.54826 5.59910 5.67166 5.68624 5.69762 5.76190 5.84250 5.87692 5.90780 5.98288 6.00052 6.21541 6.33702 6.40490 6.51752 6.52297 6.70893 6.85449 7.35728 7.80640 7.89534 8.06730 8.14859 8.79686 8.85865 9.02303 9.58228 10.42490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003576 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.888330 B = 7827.194881 C = 9250.975705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.366 6.366 6 C 0.641 3.359 7 O -0.541 6.541 8 N -0.669 5.669 9 C 0.155 3.845 10 C -0.148 4.148 11 C 0.465 3.535 12 O -0.553 6.553 13 N -0.436 5.436 14 C -0.314 4.314 15 H 0.098 0.902 16 C 0.041 3.959 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.186 3.814 23 C 0.203 3.797 24 N -0.460 5.460 25 C 0.035 3.965 26 O -0.339 6.339 27 C 0.029 3.971 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.416 0.584 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.274 0.726 41 H 0.100 0.900 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 2.164 -12.385 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.394 3.606 7 O -0.428 6.428 8 N -0.329 5.329 9 C 0.067 3.933 10 C -0.189 4.189 11 C 0.253 3.747 12 O -0.434 6.434 13 N -0.157 5.157 14 C -0.441 4.441 15 H 0.115 0.885 16 C -0.164 4.164 17 N -0.505 5.505 18 Si 0.746 3.254 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.058 3.942 23 C -0.115 4.115 24 N -0.139 5.139 25 C -0.043 4.043 26 O -0.256 6.256 27 C -0.050 4.050 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.169 0.831 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.007 1.335 -12.883 12.952 hybrid contribution 0.563 0.690 1.446 1.698 sum 0.570 2.026 -11.437 11.630 Atomic orbital electron populations 1.22506 0.94219 1.05237 1.02034 1.21945 0.94270 0.91345 0.82347 1.21850 1.02115 0.92944 1.02870 1.22504 1.01254 1.03751 0.96375 1.86319 1.71705 1.24122 1.45988 1.18168 0.79390 0.80403 0.82678 1.91039 1.39591 1.69245 1.42952 1.44194 1.54949 1.10305 1.23430 1.22717 0.95601 0.80879 0.94116 1.22063 1.03512 1.00164 0.93169 1.20211 0.83894 0.87279 0.83329 1.90594 1.44117 1.25049 1.83663 1.43329 1.52056 1.14087 1.06185 1.19498 1.04535 1.22894 0.97211 0.88456 1.25366 0.93930 0.96490 1.00618 1.69822 1.00806 1.46381 1.33486 0.86035 0.78571 0.79304 0.81525 1.20119 1.20727 1.19186 1.19301 0.89531 0.77972 1.07361 1.30738 0.94696 0.94064 0.92049 1.81120 1.09967 1.12324 1.10513 1.24311 0.95933 1.00926 0.83126 1.89883 1.24098 1.88215 1.23431 1.24377 0.87640 0.98245 0.94756 0.92272 0.91655 0.89114 0.91615 0.90508 0.91466 0.89115 0.91621 0.92471 0.74591 0.88155 0.88343 0.91591 0.88266 0.83127 0.90157 0.89068 0.89490 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.14 1.77 1.13 -90.62 -0.10 1.67 16 3 C -0.14 -1.41 8.85 37.16 0.33 -1.09 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.37 -5.82 9.94 -40.32 -0.40 -6.22 16 6 C 0.64 10.85 7.55 54.05 0.41 11.25 16 7 O -0.54 -9.61 7.95 -27.57 -0.22 -9.83 16 8 N -0.67 -11.07 4.47 -58.67 -0.26 -11.33 16 9 C 0.16 2.36 1.15 -130.74 -0.15 2.21 16 10 C -0.15 -2.17 3.97 -27.88 -0.11 -2.28 16 11 C 0.46 9.18 7.18 -10.99 -0.08 9.10 16 12 O -0.55 -12.65 14.05 5.55 0.08 -12.58 16 13 N -0.44 -9.12 2.51 -117.93 -0.30 -9.42 16 14 C -0.31 -7.54 8.94 -14.93 -0.13 -7.68 16 15 H 0.10 2.52 7.74 -52.49 -0.41 2.11 16 16 C 0.04 0.94 4.92 -17.47 -0.09 0.86 16 17 N -0.87 -19.83 11.42 55.50 0.63 -19.19 16 18 Si 0.92 18.74 29.60 -169.99 -5.03 13.71 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 C 0.19 3.24 5.21 -6.83 -0.04 3.21 16 23 C 0.20 3.64 15.06 -20.71 -0.31 3.33 16 24 N -0.46 -8.91 18.55 42.21 0.78 -8.13 16 25 C 0.04 0.58 7.83 37.61 0.29 0.87 16 26 O -0.34 -5.76 9.62 -60.16 -0.58 -6.34 16 27 C 0.03 0.39 7.84 37.61 0.29 0.69 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.42 7.21 7.26 -40.82 -0.30 6.91 16 38 H 0.10 1.21 7.41 -51.93 -0.38 0.83 16 39 H 0.10 1.32 7.31 -51.93 -0.38 0.94 16 40 H 0.27 5.97 8.31 -40.82 -0.34 5.63 16 41 H 0.10 1.35 6.68 -51.93 -0.35 1.01 16 42 H 0.15 2.88 5.46 -51.93 -0.28 2.60 16 43 H 0.08 1.18 7.96 -51.93 -0.41 0.77 16 44 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 45 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 46 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -28.86 376.85 -5.15 -34.01 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.47 Total: 11.35 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 0.94 Total: 18.28 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.86 Total: -48.07 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.12 Total: -34.96 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.86 -5.15 -34.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.304 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds