Wall clock time and date at job start Tue Mar 31 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.52997 * 109.46983 * 240.00144 * 2 1 3 5 5 O 1.45194 * 109.47172 * 119.99803 * 2 1 3 6 6 C 1.34638 * 117.00218 * 60.00335 * 5 2 1 7 7 O 1.21514 * 119.99774 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00346 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99924 * 180.02562 * 8 6 5 10 10 C 1.53004 * 112.99979 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.47155 * 48.16781 * 10 9 8 12 12 O 1.21287 * 119.99725 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99701 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99755 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00085 * 35.69695 * 14 13 11 16 16 C 1.38949 * 120.00011 * 215.69699 * 14 13 11 17 17 N 1.31419 * 119.99844 * 21.50198 * 16 14 13 18 18 Si 1.86799 * 120.00366 * 201.49994 * 16 14 13 19 19 H 1.48498 * 109.46892 * 84.97889 * 18 16 14 20 20 H 1.48495 * 109.47575 * 204.98471 * 18 16 14 21 21 H 1.48507 * 109.46961 * 324.98471 * 18 16 14 22 22 C 1.46504 * 120.00231 * 0.02562 * 13 11 10 23 23 C 1.47198 * 109.47116 * 275.70684 * 22 13 11 24 24 N 9.95551 * 88.80836 * 137.29387 * 2 1 3 25 25 C 1.54037 * 113.92798 * 311.92993 * 9 8 6 26 26 O 1.44174 * 85.51749 * 91.66058 * 25 9 8 27 27 C 1.44176 * 93.34074 * 24.19475 * 26 25 9 28 28 H 1.09000 * 109.47086 * 299.99787 * 1 2 3 29 29 H 1.08995 * 109.47111 * 60.00049 * 1 2 3 30 30 H 1.09002 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47206 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47056 * 300.00403 * 3 2 1 33 33 H 1.09004 * 109.47442 * 59.99841 * 3 2 1 34 34 H 1.08996 * 109.47575 * 299.99736 * 4 2 1 35 35 H 1.08995 * 109.47354 * 59.99957 * 4 2 1 36 36 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99975 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.46679 * 288.17336 * 10 9 8 39 39 H 1.08995 * 109.47414 * 168.17153 * 10 9 8 40 40 H 0.96999 * 119.99937 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.47219 * 35.71368 * 22 13 11 42 42 H 1.08999 * 109.46853 * 155.70930 * 22 13 11 43 43 H 1.09002 * 113.86374 * 205.81206 * 25 9 8 44 44 H 1.09001 * 113.86548 * 337.51222 * 25 9 8 45 45 H 1.08994 * 113.86937 * 221.65782 * 27 26 25 46 46 H 1.09002 * 113.86531 * 89.95090 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3384 7 8 0.9511 -2.5094 0.5040 8 7 2.0682 -2.6656 2.4166 9 6 1.6751 -4.0671 2.5826 10 6 2.2341 -4.6976 3.8596 11 6 1.9762 -3.7804 5.0273 12 8 1.4014 -2.7264 4.8550 13 7 2.3842 -4.1314 6.2628 14 6 2.1492 -3.2972 7.3251 15 1 1.2371 -2.7203 7.3672 16 6 3.0843 -3.1940 8.3477 17 7 4.3356 -3.5318 8.1303 18 14 2.5630 -2.5751 10.0313 19 1 2.0250 -3.7058 10.8295 20 1 3.7363 -1.9905 10.7290 21 1 1.5130 -1.5368 9.8737 22 6 3.0790 -5.4043 6.4708 23 6 2.0900 -6.4831 6.6282 24 7 1.3230 -7.3141 6.7507 25 6 0.1712 -4.3235 2.3696 26 8 0.5245 -4.5774 0.9951 27 6 1.8851 -4.9256 1.3210 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 2.6278 -2.2367 3.0829 38 1 3.3074 -4.8518 3.7489 39 1 1.7456 -5.6560 4.0356 40 1 4.9883 -3.4601 8.8442 41 1 3.7142 -5.6163 5.6108 42 1 3.6931 -5.3405 7.3691 43 1 -0.2058 -5.1997 2.8972 44 1 -0.4510 -3.4395 2.5090 45 1 2.6224 -4.5192 0.6288 46 1 2.0315 -5.9857 1.5284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:06 Heat of formation + Delta-G solvation = -91.827538 kcal Electronic energy + Delta-G solvation = -31313.069951 eV Core-core repulsion = 27012.178224 eV Total energy + Delta-G solvation = -4300.891726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49504 -41.04121 -40.23889 -37.76312 -37.63144 -36.40147 -35.39741 -34.58939 -33.81730 -31.93297 -29.18638 -28.31889 -28.25164 -27.92185 -27.50201 -25.97525 -24.09469 -21.54435 -20.77088 -20.37427 -19.76922 -19.12513 -18.27013 -17.67943 -17.57534 -17.11298 -17.09033 -16.86621 -16.36359 -16.34258 -15.80363 -15.68332 -15.29659 -15.14585 -14.98450 -14.82332 -14.49596 -14.29824 -13.86381 -13.81395 -13.72369 -13.30332 -13.21583 -13.15472 -13.04750 -12.97370 -12.81190 -12.78301 -12.54364 -12.42619 -12.30728 -12.20988 -12.16468 -12.08856 -11.53904 -11.26704 -10.95801 -10.94250 -10.49566 -10.35132 -9.95948 -9.63676 -8.38267 -6.06439 1.25323 1.40413 1.48621 1.54033 1.65728 1.85639 1.91135 1.99476 2.33111 2.69074 2.90395 2.96555 3.20149 3.37304 3.47413 3.62578 3.81887 3.85993 4.00320 4.00989 4.21889 4.34986 4.44552 4.51176 4.56117 4.60569 4.65478 4.67253 4.75272 4.78792 4.79639 4.88050 4.91810 5.04934 5.09260 5.14406 5.33018 5.35498 5.36129 5.52375 5.53644 5.68756 6.17477 6.44091 6.53953 6.63162 7.16988 7.34943 7.53605 7.96104 8.66485 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003576 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.888330 B = 7827.194881 C = 9250.975705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.174 4.174 5 O -0.380 6.380 6 C 0.636 3.364 7 O -0.552 6.552 8 N -0.672 5.672 9 C 0.151 3.849 10 C -0.135 4.135 11 C 0.460 3.540 12 O -0.593 6.593 13 N -0.449 5.449 14 C -0.341 4.341 15 H 0.065 0.935 16 C 0.020 3.980 17 N -0.873 5.873 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.281 1.281 22 C 0.191 3.809 23 C 0.220 3.780 24 N -0.484 5.484 25 C 0.032 3.968 26 O -0.364 6.364 27 C 0.040 3.960 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.410 0.590 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.279 0.721 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 1.476 -13.361 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.231 4.231 5 O -0.295 6.295 6 C 0.389 3.611 7 O -0.440 6.440 8 N -0.331 5.331 9 C 0.063 3.937 10 C -0.175 4.175 11 C 0.250 3.750 12 O -0.476 6.476 13 N -0.170 5.170 14 C -0.468 4.468 15 H 0.082 0.918 16 C -0.185 4.185 17 N -0.510 5.510 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.206 1.206 22 C 0.064 3.936 23 C -0.098 4.098 24 N -0.164 5.164 25 C -0.046 4.046 26 O -0.282 6.282 27 C -0.038 4.038 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.532 0.625 -13.863 13.961 hybrid contribution 0.059 0.967 1.712 1.967 sum 1.590 1.591 -12.151 12.357 Atomic orbital electron populations 1.22449 0.94553 1.03519 1.02976 1.22374 0.94251 0.92741 0.81856 1.21881 1.02429 0.90949 1.03997 1.22417 1.01510 1.02297 0.96848 1.86325 1.71908 1.23696 1.47589 1.18312 0.79315 0.80773 0.82710 1.91037 1.40000 1.69631 1.43372 1.44297 1.54761 1.10973 1.23079 1.22853 0.94776 0.80693 0.95350 1.22061 1.06030 0.99319 0.90065 1.21032 0.82324 0.87450 0.84157 1.90579 1.45477 1.27126 1.84407 1.43455 1.52639 1.14925 1.05962 1.19265 1.03963 1.24384 0.99221 0.91751 1.25753 0.93970 0.96592 1.02148 1.69832 1.00825 1.46270 1.34085 0.85382 0.78048 0.78535 0.79102 1.19874 1.19818 1.20602 1.19457 0.89092 0.76217 1.08799 1.30746 0.94176 0.93614 0.91233 1.81145 1.10523 1.13290 1.11403 1.24303 0.96523 1.00396 0.83396 1.89860 1.25951 1.88611 1.23760 1.24567 0.86087 0.99865 0.93276 0.93154 0.88845 0.92054 0.91134 0.87628 0.92069 0.91750 0.89092 0.91920 0.75266 0.84490 0.86239 0.91099 0.83662 0.84365 0.88449 0.92228 0.89343 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 8.37 71.98 0.60 -3.95 16 2 C 0.12 3.11 1.13 -10.79 -0.01 3.10 16 3 C -0.14 -2.50 8.85 71.98 0.64 -1.86 16 4 C -0.17 -3.91 8.37 71.98 0.60 -3.30 16 5 O -0.38 -12.25 9.94 -55.47 -0.55 -12.80 16 6 C 0.64 21.94 7.55 129.79 0.98 22.92 16 7 O -0.55 -20.06 7.95 27.72 0.22 -19.84 16 8 N -0.67 -22.30 4.47 -581.02 -2.60 -24.90 16 9 C 0.15 4.41 1.15 4.31 0.00 4.42 16 10 C -0.13 -3.58 3.97 29.85 0.12 -3.46 16 11 C 0.46 17.87 7.18 87.66 0.63 18.50 16 12 O -0.59 -27.76 14.05 -3.05 -0.04 -27.80 16 13 N -0.45 -18.46 2.51 -645.42 -1.62 -20.08 16 14 C -0.34 -16.57 8.94 84.04 0.75 -15.82 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.02 0.91 4.92 84.93 0.42 1.33 16 17 N -0.87 -38.91 11.42 21.66 0.25 -38.66 16 18 Si 0.96 38.36 29.60 68.60 2.03 40.39 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.19 6.22 5.21 84.57 0.44 6.66 16 23 C 0.22 7.45 15.06 89.42 1.35 8.80 16 24 N -0.48 -17.92 18.55 20.02 0.37 -17.55 16 25 C 0.03 1.05 7.83 72.27 0.57 1.61 16 26 O -0.36 -12.13 9.62 -125.14 -1.20 -13.34 16 27 C 0.04 1.00 7.84 72.27 0.57 1.56 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.95 5.88 -2.39 -0.01 1.94 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.82 5.88 -2.39 -0.01 1.80 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 14.38 7.26 -92.71 -0.67 13.71 16 38 H 0.14 2.68 7.41 -2.39 -0.02 2.66 16 39 H 0.12 2.75 7.31 -2.39 -0.02 2.74 16 40 H 0.28 11.74 8.31 -92.71 -0.77 10.97 16 41 H 0.15 3.34 6.68 -2.39 -0.02 3.32 16 42 H 0.14 5.02 5.46 -2.39 -0.01 5.01 16 43 H 0.10 2.77 7.96 -2.39 -0.02 2.75 16 44 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 45 H 0.09 2.19 8.04 -2.39 -0.02 2.17 16 46 H 0.12 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -65.10 376.85 4.85 -60.24 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.35 Total: 33.83 kcal Atomic # 6 Polarization: 32.85 SS G_CDS: 7.65 Total: 40.50 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.60 Total: -101.19 kcal Atomic # 8 Polarization: -72.20 SS G_CDS: -1.58 Total: -73.78 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -65.10 4.85 -60.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.584 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds