Wall clock time and date at job start Wed Apr 1 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.87297 * 2 1 4 4 C 1.54329 * 109.88429 * 121.01985 * 2 1 3 5 5 H 1.08997 * 110.72055 * 215.58552 * 4 2 1 6 6 N 1.46900 * 110.71727 * 338.85872 * 4 2 1 7 7 C 1.46896 * 110.99525 * 199.50541 * 6 4 2 8 8 C 1.50702 * 109.46869 * 180.02562 * 7 6 4 9 9 O 1.21291 * 120.00216 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00073 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00167 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99656 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00035 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00023 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00008 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47355 * 59.99984 * 15 13 11 17 17 H 1.48497 * 109.47167 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46901 * 300.00002 * 15 13 11 19 19 C 1.55159 * 102.94061 * 97.22299 * 4 2 1 20 20 C 1.54905 * 101.58322 * 35.50402 * 19 4 2 21 21 N 1.47027 * 109.87945 * 238.82772 * 2 1 3 22 22 C 1.34766 * 125.64935 * 59.47708 * 21 2 1 23 23 O 1.21745 * 120.00395 * 4.97664 * 22 21 2 24 24 C 1.46379 * 120.00299 * 184.97591 * 22 21 2 25 25 C 1.33974 * 119.23278 * 174.68740 * 24 22 21 26 26 O 1.35003 * 121.68561 * 180.12137 * 25 24 22 27 27 C 1.43246 * 116.83049 * 343.31538 * 26 25 24 28 28 C 1.53556 * 108.08707 * 45.25480 * 27 26 25 29 29 O 1.36217 * 119.22894 * 354.95452 * 24 22 21 30 30 H 1.09002 * 109.47089 * 301.72384 * 1 2 3 31 31 H 1.08999 * 109.47174 * 181.73032 * 1 2 3 32 32 H 1.09001 * 109.47674 * 61.72280 * 1 2 3 33 33 H 1.00897 * 110.99955 * 323.45979 * 6 4 2 34 34 H 1.09002 * 109.47631 * 300.00167 * 7 6 4 35 35 H 1.09002 * 109.46840 * 60.00504 * 7 6 4 36 36 H 0.97004 * 119.99977 * 359.97438 * 10 8 7 37 37 H 0.97008 * 119.99877 * 179.97438 * 14 13 11 38 38 H 1.08994 * 111.00400 * 153.57655 * 19 4 2 39 39 H 1.09002 * 111.00226 * 277.39061 * 19 4 2 40 40 H 1.08996 * 110.37133 * 81.82440 * 20 19 4 41 41 H 1.09008 * 110.36731 * 204.15238 * 20 19 4 42 42 H 1.07996 * 119.15724 * 0.39333 * 25 24 22 43 43 H 1.08998 * 109.73810 * 285.60591 * 27 26 25 44 44 H 1.08997 * 109.77732 * 164.92293 * 27 26 25 45 45 H 1.08999 * 109.75108 * 182.21795 * 28 27 26 46 46 H 1.08998 * 109.75526 * 61.47173 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 1 2.9656 -0.2811 1.6186 6 7 1.0264 -0.7997 2.2915 7 6 1.6257 -1.0758 3.6039 8 6 0.5426 -1.1220 4.6508 9 8 -0.6145 -0.9420 4.3348 10 7 0.8599 -1.3622 5.9385 11 6 -0.1252 -1.4037 6.8911 12 1 -1.1556 -1.2434 6.6096 13 6 0.2018 -1.6518 8.2185 14 7 1.4554 -1.8473 8.5608 15 14 -1.1406 -1.7091 9.5162 16 1 -2.1098 -2.7824 9.1788 17 1 -0.5350 -1.9888 10.8429 18 1 -1.8443 -0.4020 9.5584 19 6 2.3518 -2.1686 0.6952 20 6 2.8567 -1.8508 -0.7343 21 7 2.0299 -0.7157 -1.1830 22 6 1.7739 -0.3888 -2.4651 23 8 1.1498 0.6245 -2.7221 24 6 2.2463 -1.2519 -3.5489 25 6 1.8927 -0.9712 -4.8103 26 8 2.2981 -1.7349 -5.8471 27 6 3.3981 -2.6204 -5.6065 28 6 3.1557 -3.3286 -4.2658 29 8 3.0307 -2.3249 -3.2508 30 1 -0.3633 0.5404 0.8741 31 1 -0.3633 -1.0272 0.0310 32 1 -0.3634 0.4868 -0.9050 33 1 0.4880 0.0533 2.3120 34 1 2.1419 -2.0353 3.5731 35 1 2.3373 -0.2881 3.8513 36 1 1.7854 -1.5057 6.1914 37 1 1.6838 -2.0202 9.4877 38 1 3.1269 -2.6602 1.2830 39 1 1.4452 -2.7730 0.6647 40 1 3.9090 -1.5677 -0.7108 41 1 2.7086 -2.7100 -1.3887 42 1 1.2709 -0.1094 -5.0031 43 1 4.3259 -2.0504 -5.5593 44 1 3.4596 -3.3580 -6.4067 45 1 3.9978 -3.9816 -4.0366 46 1 2.2382 -3.9146 -4.3193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178054941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:22 Heat of formation + Delta-G solvation = -105.198277 kcal Electronic energy + Delta-G solvation = -29603.711924 eV Core-core repulsion = 25302.240399 eV Total energy + Delta-G solvation = -4301.471525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51509 -40.19928 -38.46506 -37.72766 -37.45860 -34.72908 -33.78956 -32.43453 -31.31141 -31.17214 -30.50855 -29.15349 -26.73173 -25.80549 -25.15348 -23.87787 -23.38886 -21.41261 -19.80725 -19.51948 -19.26653 -18.68847 -17.98329 -17.89459 -16.85819 -16.30366 -16.15068 -16.07813 -15.36916 -15.27364 -15.01997 -14.89665 -14.72020 -14.47096 -14.08019 -13.94712 -13.73810 -13.63518 -13.22657 -13.06575 -12.73754 -12.40905 -12.25227 -12.15798 -11.90585 -11.60104 -11.49976 -11.46561 -11.32197 -11.07202 -11.00242 -10.79400 -10.62168 -10.44176 -10.21348 -10.11925 -9.50027 -8.93919 -8.47077 -8.44132 -8.10888 -7.96240 -6.41754 -3.82533 1.04503 2.53095 2.65817 2.99786 3.03525 3.20379 3.26010 3.30576 3.84417 3.90763 4.07247 4.24022 4.31909 4.36564 4.50222 4.56858 4.64181 4.75779 4.86581 5.01605 5.02946 5.10606 5.17939 5.23839 5.32156 5.43840 5.54981 5.57638 5.64976 5.74576 5.82685 5.90679 5.97341 6.11012 6.13383 6.24484 6.28203 6.32798 6.49892 6.94468 7.18784 7.34628 7.55083 7.61092 7.92603 8.06050 8.61146 9.17809 9.54144 10.05606 10.75860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.001927 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.791946 B =14527.576794 C =14983.612774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.075 0.925 4 C 0.076 3.924 5 H 0.059 0.941 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.101 3.899 21 N -0.598 5.598 22 C 0.600 3.400 23 O -0.537 6.537 24 C -0.089 4.089 25 C 0.040 3.960 26 O -0.301 6.301 27 C 0.013 3.987 28 C 0.015 3.985 29 O -0.298 6.298 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.192 0.808 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -2.909 -25.790 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.035 4.035 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.022 4.022 21 N -0.330 5.330 22 C 0.390 3.610 23 O -0.417 6.417 24 C -0.137 4.137 25 C -0.027 4.027 26 O -0.212 6.212 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.214 6.214 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.208 0.792 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.623 -2.965 -26.125 27.671 hybrid contribution 0.687 0.423 1.118 1.379 sum 9.310 -2.541 -25.007 26.805 Atomic orbital electron populations 1.21987 0.93392 1.03492 1.02382 1.21636 0.95998 0.95378 0.83670 0.90656 1.22564 0.93962 0.95884 0.91054 0.92357 1.60350 1.22522 1.43374 1.02699 1.21726 0.95993 1.01472 0.89111 1.19786 0.89647 0.84582 0.83366 1.90528 1.20409 1.54940 1.80787 1.41854 1.10363 1.62272 1.05526 1.19653 0.90804 1.45678 0.86759 0.87969 1.25260 0.97202 0.97239 0.98260 1.69605 1.16788 1.48688 1.19269 0.85914 0.80221 0.79003 0.79056 1.19890 1.21000 1.19918 1.22915 1.02483 0.96968 0.93935 1.22577 0.94294 0.89515 0.95773 1.48265 1.49800 1.30488 1.04465 1.16713 0.79435 0.84230 0.80670 1.90869 1.42360 1.25567 1.82940 1.20523 1.05657 0.93839 0.93666 1.23161 0.99166 0.95567 0.84814 1.86143 1.48642 1.51684 1.34779 1.23722 0.89161 0.94000 0.99357 1.23649 1.04307 0.90254 0.87891 1.86516 1.65436 1.29463 1.39985 0.90925 0.91388 0.91863 0.82391 0.89543 0.93768 0.77468 0.91836 0.90013 0.89304 0.91443 0.88547 0.79184 0.90101 0.86168 0.86110 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.35 37.15 0.31 -1.80 16 2 C 0.14 1.71 3.38 -66.95 -0.23 1.49 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.08 0.93 3.11 -65.87 -0.20 0.73 16 5 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 6 N -0.65 -10.13 5.20 -106.05 -0.55 -10.69 16 7 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 8 C 0.44 10.23 7.82 -10.98 -0.09 10.15 16 9 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 10 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 11 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 15 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.12 -1.33 6.69 -24.58 -0.16 -1.50 16 20 C 0.10 0.99 6.05 -2.53 -0.02 0.98 16 21 N -0.60 -7.21 3.08 -164.64 -0.51 -7.72 16 22 C 0.60 7.79 7.49 -12.99 -0.10 7.70 16 23 O -0.54 -8.29 15.19 5.15 0.08 -8.21 16 24 C -0.09 -0.94 6.56 -37.81 -0.25 -1.19 16 25 C 0.04 0.38 10.60 29.23 0.31 0.69 16 26 O -0.30 -2.49 10.47 -30.83 -0.32 -2.81 16 27 C 0.01 0.06 7.30 37.45 0.27 0.34 16 28 C 0.01 0.08 7.31 37.45 0.27 0.35 16 29 O -0.30 -2.60 6.78 -34.55 -0.23 -2.83 16 30 H 0.07 1.00 6.39 -51.93 -0.33 0.67 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.91 6.84 -51.93 -0.36 0.56 16 33 H 0.35 5.75 6.22 -39.29 -0.24 5.50 16 34 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 35 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.90 5.73 -51.92 -0.30 0.60 16 42 H 0.19 1.73 7.39 -52.49 -0.39 1.34 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -33.51 374.91 -6.81 -40.32 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.51 Total: 12.93 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.15 Total: 10.76 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.39 Total: -56.26 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.39 Total: -29.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.51 -6.81 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178054941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.881 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds