Wall clock time and date at job start Wed Apr 1 2020 00:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.87297 * 2 1 4 4 C 1.54329 * 109.88429 * 121.01985 * 2 1 3 5 5 H 1.08997 * 110.72055 * 215.58552 * 4 2 1 6 6 N 1.46900 * 110.71727 * 338.85872 * 4 2 1 7 7 C 1.46896 * 110.99525 * 199.50541 * 6 4 2 8 8 C 1.50702 * 109.46869 * 180.02562 * 7 6 4 9 9 O 1.21291 * 120.00216 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00073 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00167 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99656 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00035 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00023 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00008 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47355 * 59.99984 * 15 13 11 17 17 H 1.48497 * 109.47167 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46901 * 300.00002 * 15 13 11 19 19 C 1.55159 * 102.94061 * 97.22299 * 4 2 1 20 20 C 1.54905 * 101.58322 * 35.50402 * 19 4 2 21 21 N 1.47027 * 109.87945 * 238.82772 * 2 1 3 22 22 C 1.34766 * 125.64935 * 59.47708 * 21 2 1 23 23 O 1.21745 * 120.00395 * 4.97664 * 22 21 2 24 24 C 1.46379 * 120.00299 * 184.97591 * 22 21 2 25 25 C 1.33974 * 119.23278 * 174.68740 * 24 22 21 26 26 O 1.35003 * 121.68561 * 180.12137 * 25 24 22 27 27 C 1.43246 * 116.83049 * 343.31538 * 26 25 24 28 28 C 1.53556 * 108.08707 * 45.25480 * 27 26 25 29 29 O 1.36217 * 119.22894 * 354.95452 * 24 22 21 30 30 H 1.09002 * 109.47089 * 301.72384 * 1 2 3 31 31 H 1.08999 * 109.47174 * 181.73032 * 1 2 3 32 32 H 1.09001 * 109.47674 * 61.72280 * 1 2 3 33 33 H 1.00897 * 110.99955 * 323.45979 * 6 4 2 34 34 H 1.09002 * 109.47631 * 300.00167 * 7 6 4 35 35 H 1.09002 * 109.46840 * 60.00504 * 7 6 4 36 36 H 0.97004 * 119.99977 * 359.97438 * 10 8 7 37 37 H 0.97008 * 119.99877 * 179.97438 * 14 13 11 38 38 H 1.08994 * 111.00400 * 153.57655 * 19 4 2 39 39 H 1.09002 * 111.00226 * 277.39061 * 19 4 2 40 40 H 1.08996 * 110.37133 * 81.82440 * 20 19 4 41 41 H 1.09008 * 110.36731 * 204.15238 * 20 19 4 42 42 H 1.07996 * 119.15724 * 0.39333 * 25 24 22 43 43 H 1.08998 * 109.73810 * 285.60591 * 27 26 25 44 44 H 1.08997 * 109.77732 * 164.92293 * 27 26 25 45 45 H 1.08999 * 109.75108 * 182.21795 * 28 27 26 46 46 H 1.08998 * 109.75526 * 61.47173 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 1 2.9656 -0.2811 1.6186 6 7 1.0264 -0.7997 2.2915 7 6 1.6257 -1.0758 3.6039 8 6 0.5426 -1.1220 4.6508 9 8 -0.6145 -0.9420 4.3348 10 7 0.8599 -1.3622 5.9385 11 6 -0.1252 -1.4037 6.8911 12 1 -1.1556 -1.2434 6.6096 13 6 0.2018 -1.6518 8.2185 14 7 1.4554 -1.8473 8.5608 15 14 -1.1406 -1.7091 9.5162 16 1 -2.1098 -2.7824 9.1788 17 1 -0.5350 -1.9888 10.8429 18 1 -1.8443 -0.4020 9.5584 19 6 2.3518 -2.1686 0.6952 20 6 2.8567 -1.8508 -0.7343 21 7 2.0299 -0.7157 -1.1830 22 6 1.7739 -0.3888 -2.4651 23 8 1.1498 0.6245 -2.7221 24 6 2.2463 -1.2519 -3.5489 25 6 1.8927 -0.9712 -4.8103 26 8 2.2981 -1.7349 -5.8471 27 6 3.3981 -2.6204 -5.6065 28 6 3.1557 -3.3286 -4.2658 29 8 3.0307 -2.3249 -3.2508 30 1 -0.3633 0.5404 0.8741 31 1 -0.3633 -1.0272 0.0310 32 1 -0.3634 0.4868 -0.9050 33 1 0.4880 0.0533 2.3120 34 1 2.1419 -2.0353 3.5731 35 1 2.3373 -0.2881 3.8513 36 1 1.7854 -1.5057 6.1914 37 1 1.6838 -2.0202 9.4877 38 1 3.1269 -2.6602 1.2830 39 1 1.4452 -2.7730 0.6647 40 1 3.9090 -1.5677 -0.7108 41 1 2.7086 -2.7100 -1.3887 42 1 1.2709 -0.1094 -5.0031 43 1 4.3259 -2.0504 -5.5593 44 1 3.4596 -3.3580 -6.4067 45 1 3.9978 -3.9816 -4.0366 46 1 2.2382 -3.9146 -4.3193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178054941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:21 Heat of formation + Delta-G solvation = -130.550772 kcal Electronic energy + Delta-G solvation = -29604.811291 eV Core-core repulsion = 25302.240399 eV Total energy + Delta-G solvation = -4302.570892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19282 -41.09866 -40.10107 -38.94937 -38.07956 -36.18261 -35.53169 -33.28556 -33.07902 -32.18358 -31.57515 -29.75172 -28.23121 -26.60091 -26.39346 -25.32628 -24.25171 -22.23841 -21.06757 -20.66270 -20.25606 -19.89787 -19.40320 -18.71438 -17.87347 -17.41219 -17.20062 -17.03941 -16.82921 -16.35827 -16.11853 -15.87028 -15.68571 -15.57416 -15.39701 -15.17653 -14.69082 -14.62921 -14.40162 -14.24582 -13.94182 -13.47382 -13.42420 -13.38137 -13.15112 -13.07223 -12.87236 -12.64515 -12.41982 -12.33839 -12.11897 -11.90618 -11.84671 -11.68871 -11.55070 -11.48429 -11.02916 -10.32073 -9.99672 -9.86606 -9.34899 -9.16730 -8.45145 -5.93454 0.25582 1.40670 1.42610 1.53184 1.71483 1.98029 2.07999 2.22722 2.29602 2.35143 2.92680 3.22403 3.36400 3.45465 3.52843 3.68220 3.80009 4.02378 4.03378 4.05844 4.25814 4.27509 4.31806 4.33589 4.45064 4.51303 4.53898 4.61743 4.65131 4.67460 4.69794 4.82901 4.99369 5.03913 5.04115 5.25667 5.30139 5.38856 5.42491 5.72427 5.90255 6.11441 6.24081 6.35001 6.48908 6.62288 6.98260 7.14579 7.58736 8.14363 8.71877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.001927 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.791946 B =14527.576794 C =14983.612774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.137 3.863 3 H 0.075 0.925 4 C 0.081 3.919 5 H 0.079 0.921 6 N -0.667 5.667 7 C 0.066 3.934 8 C 0.438 3.562 9 O -0.624 6.624 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.119 4.119 20 C 0.107 3.893 21 N -0.600 5.600 22 C 0.592 3.408 23 O -0.573 6.573 24 C -0.100 4.100 25 C 0.051 3.949 26 O -0.310 6.310 27 C 0.007 3.993 28 C 0.010 3.990 29 O -0.307 6.307 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.346 0.654 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.187 0.813 43 H 0.087 0.913 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.829 -4.180 -26.391 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.029 4.029 5 H 0.097 0.903 6 N -0.302 5.302 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.510 6.510 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.158 4.158 20 C -0.015 4.015 21 N -0.331 5.331 22 C 0.383 3.617 23 O -0.456 6.456 24 C -0.148 4.148 25 C -0.016 4.016 26 O -0.222 6.222 27 C -0.067 4.067 28 C -0.065 4.065 29 O -0.223 6.223 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.204 0.796 43 H 0.105 0.895 44 H 0.169 0.831 45 H 0.171 0.829 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.707 -4.271 -26.737 29.116 hybrid contribution 0.076 0.772 1.174 1.407 sum 10.783 -3.500 -25.563 27.964 Atomic orbital electron populations 1.21852 0.94684 1.02239 1.01473 1.21573 0.94926 0.95728 0.84459 0.90720 1.22613 0.93550 0.97092 0.89690 0.90340 1.60347 1.23809 1.43330 1.02724 1.21584 0.93832 1.03583 0.87665 1.20900 0.90580 0.82212 0.83771 1.90501 1.22844 1.56175 1.81507 1.41915 1.10081 1.63013 1.06024 1.19610 0.90573 1.47865 0.88255 0.90432 1.26009 0.99434 0.96295 0.99535 1.69661 1.17910 1.48453 1.19981 0.85012 0.77686 0.78827 0.76951 1.19816 1.19482 1.19812 1.22903 1.02413 0.95752 0.94703 1.22677 0.94658 0.89045 0.95122 1.48349 1.49805 1.30904 1.04085 1.17121 0.79027 0.84207 0.81365 1.90837 1.44018 1.27209 1.83569 1.20147 1.07005 0.94757 0.92933 1.23143 0.98286 0.95303 0.84905 1.86133 1.49702 1.51912 1.34428 1.24073 0.88160 0.94075 1.00416 1.23967 1.05656 0.89619 0.87247 1.86456 1.64875 1.29432 1.41505 0.91406 0.92719 0.93095 0.83195 0.87293 0.91264 0.76894 0.91320 0.87854 0.91091 0.89706 0.87771 0.79630 0.89461 0.83092 0.82932 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.35 71.98 0.60 -3.48 16 2 C 0.14 3.38 3.38 45.34 0.15 3.53 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.08 1.82 3.11 46.11 0.14 1.97 16 5 H 0.08 1.52 7.91 -2.39 -0.02 1.50 16 6 N -0.67 -20.08 5.20 -489.44 -2.55 -22.62 16 7 C 0.07 2.11 6.02 85.56 0.52 2.63 16 8 C 0.44 20.39 7.82 87.66 0.69 21.07 16 9 O -0.62 -34.29 15.78 -3.06 -0.05 -34.34 16 10 N -0.57 -28.94 5.29 -306.98 -1.62 -30.56 16 11 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 12 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 14 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 15 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C -0.12 -2.29 6.69 31.99 0.21 -2.07 16 20 C 0.11 1.86 6.05 86.85 0.53 2.39 16 21 N -0.60 -14.03 3.08 -793.02 -2.44 -16.47 16 22 C 0.59 15.40 7.49 86.36 0.65 16.05 16 23 O -0.57 -18.29 15.19 -4.49 -0.07 -18.35 16 24 C -0.10 -2.05 6.56 23.42 0.15 -1.90 16 25 C 0.05 0.95 10.60 66.85 0.71 1.66 16 26 O -0.31 -4.66 10.47 -69.25 -0.72 -5.39 16 27 C 0.01 0.05 7.30 72.17 0.53 0.58 16 28 C 0.01 0.07 7.31 72.17 0.53 0.60 16 29 O -0.31 -4.73 6.78 -82.54 -0.56 -5.29 16 30 H 0.07 1.95 6.39 -2.39 -0.02 1.93 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.55 6.84 -2.39 -0.02 1.53 16 33 H 0.35 11.29 6.22 -89.70 -0.56 10.74 16 34 H 0.11 3.07 8.12 -2.39 -0.02 3.05 16 35 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 36 H 0.40 18.90 7.90 -92.70 -0.73 18.16 16 37 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.70 5.73 -2.38 -0.01 1.69 16 42 H 0.19 3.48 7.39 -2.91 -0.02 3.45 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.15 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -74.18 374.91 0.72 -73.46 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.26 Total: 38.75 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.68 Total: 24.76 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -6.33 Total: -118.51 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -1.40 Total: -63.37 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.18 0.72 -73.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178054941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.092 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds