Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36610 * 119.99870 * 2 1 4 4 H 1.08000 * 119.99788 * 146.63880 * 3 2 1 5 5 C 1.39221 * 120.00018 * 326.62920 * 3 2 1 6 6 N 1.31254 * 119.99960 * 335.88441 * 5 3 2 7 7 Si 1.86798 * 119.99893 * 155.88131 * 5 3 2 8 8 H 1.48495 * 109.47312 * 59.99878 * 7 5 3 9 9 H 1.48504 * 109.46920 * 300.00036 * 7 5 3 10 10 H 1.48496 * 109.47346 * 180.02562 * 7 5 3 11 11 C 1.34771 * 120.00086 * 180.02562 * 2 1 3 12 12 O 1.21628 * 120.00397 * 175.30451 * 11 2 1 13 13 C 1.47336 * 119.99952 * 355.30193 * 11 2 1 14 14 N 1.29131 * 125.81293 * 5.38586 * 13 11 2 15 15 O 1.41402 * 112.85312 * 180.02562 * 14 13 11 16 16 C 1.43968 * 107.65766 * 342.29399 * 15 14 13 17 17 H 1.09001 * 113.34149 * 263.85490 * 16 15 14 18 18 C 1.53721 * 110.35255 * 135.59941 * 16 15 14 19 19 N 1.46680 * 106.91392 * 278.94950 * 18 16 15 20 20 C 1.34773 * 125.31039 * 161.96656 * 19 18 16 21 21 O 1.21517 * 120.00190 * 179.97438 * 20 19 18 22 22 O 1.34632 * 120.00010 * 359.97438 * 20 19 18 23 23 C 1.45201 * 117.00234 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47290 * 59.99517 * 23 22 20 25 25 C 1.52998 * 109.47154 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47075 * 299.99762 * 23 22 20 27 27 C 1.48790 * 109.66380 * 342.30042 * 19 18 16 28 28 C 1.51763 * 125.81666 * 185.70232 * 13 11 2 29 29 H 1.09000 * 113.26687 * 318.39021 * 28 13 11 30 30 H 1.09009 * 109.47290 * 357.40360 * 1 2 3 31 31 H 1.08997 * 109.47402 * 117.40578 * 1 2 3 32 32 H 1.09007 * 109.47174 * 237.40629 * 1 2 3 33 33 H 0.96997 * 119.99892 * 354.00143 * 6 5 3 34 34 H 1.08997 * 109.97166 * 38.32111 * 18 16 15 35 35 H 1.09007 * 109.97066 * 159.54726 * 18 16 15 36 36 H 1.09002 * 109.47227 * 60.00109 * 24 23 22 37 37 H 1.08995 * 109.47254 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47220 * 300.00419 * 24 23 22 39 39 H 1.08998 * 109.47102 * 59.99850 * 25 23 22 40 40 H 1.09000 * 109.46855 * 179.97438 * 25 23 22 41 41 H 1.08997 * 109.47457 * 299.99957 * 25 23 22 42 42 H 1.08994 * 109.47328 * 59.99626 * 26 23 22 43 43 H 1.08996 * 109.47254 * 180.02562 * 26 23 22 44 44 H 1.09007 * 109.47021 * 299.99748 * 26 23 22 45 45 H 1.09004 * 109.54645 * 241.81670 * 27 19 18 46 46 H 1.09002 * 111.04941 * 120.47902 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.1831 0.0000 4 1 3.0945 1.2601 0.5144 5 6 1.6240 2.2894 -0.6632 6 7 0.7739 2.1216 -1.6490 7 14 2.1309 4.0125 -0.1500 8 1 3.5999 4.1634 -0.3057 9 1 1.7582 4.2357 1.2701 10 1 1.4370 5.0081 -1.0057 11 6 2.1388 -1.1671 -0.0005 12 8 3.3521 -1.1689 -0.0867 13 6 1.4059 -2.4410 0.1034 14 7 0.1217 -2.5762 0.1017 15 8 -0.2888 -3.9245 0.2161 16 6 0.8394 -4.7542 -0.1176 17 1 0.8389 -5.0867 -1.1557 18 6 0.9711 -5.9079 0.8897 19 7 1.6478 -5.3662 2.0729 20 6 1.6526 -5.9333 3.2955 21 8 2.2474 -5.3993 4.2107 22 8 0.9983 -7.0915 3.5029 23 6 1.0466 -7.6450 4.8444 24 6 0.4373 -6.6463 5.8304 25 6 0.2518 -8.9516 4.8860 26 6 2.5013 -7.9199 5.2305 27 6 2.3238 -4.0881 1.7218 28 6 2.0315 -3.8172 0.2375 29 1 2.9012 -3.9592 -0.4040 30 1 -0.3634 1.0267 0.0466 31 1 -0.3634 -0.4730 -0.9123 32 1 -0.3634 -0.5536 0.8659 33 1 0.5770 1.2288 -1.9730 34 1 -0.0170 -6.2784 1.1627 35 1 1.5642 -6.7139 0.4572 36 1 -0.5991 -6.4504 5.5554 37 1 0.4732 -7.0619 6.8374 38 1 1.0032 -5.7152 5.8009 39 1 0.6855 -9.6632 4.1835 40 1 0.2885 -9.3673 5.8930 41 1 -0.7845 -8.7554 4.6111 42 1 3.0673 -6.9888 5.2010 43 1 2.5377 -8.3357 6.2374 44 1 2.9355 -8.6314 4.5281 45 1 3.3985 -4.1905 1.8725 46 1 1.9445 -3.2652 2.3276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179227883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = -63.411079 kcal Electronic energy + Delta-G solvation = -30709.641252 eV Core-core repulsion = 26409.981756 eV Total energy + Delta-G solvation = -4299.659496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31182 -40.46770 -38.56709 -37.43279 -35.89221 -35.19346 -34.19435 -33.16440 -31.73077 -30.66653 -28.74117 -27.65853 -27.59275 -26.59599 -25.27723 -24.60315 -22.48835 -21.96597 -21.27999 -19.62384 -19.21538 -18.23836 -17.67160 -16.90416 -16.75933 -16.38775 -15.99399 -15.65427 -14.97540 -14.86503 -14.75496 -14.59247 -14.30353 -13.91892 -13.83506 -13.81058 -13.33927 -12.92976 -12.77700 -12.61599 -12.45837 -12.33202 -12.13503 -12.10294 -12.04433 -11.98507 -11.80958 -11.63650 -11.54463 -11.48546 -11.34598 -10.96965 -10.56831 -10.42857 -10.31540 -10.18125 -10.11183 -9.46314 -9.17801 -8.93887 -8.85146 -8.07338 -6.92735 -4.20373 1.43588 1.87311 2.71149 3.02688 3.22509 3.24918 3.44810 3.60286 3.80739 3.86978 4.17438 4.22331 4.38226 4.42219 4.47498 4.51617 4.65177 4.67080 4.82205 5.00973 5.13675 5.18807 5.20748 5.26165 5.29281 5.36006 5.43500 5.49482 5.52162 5.61587 5.62759 5.71276 5.72784 5.88747 6.00419 6.07249 6.13361 6.19200 6.27464 6.31992 6.64956 7.25738 7.37607 7.62962 7.80783 8.17985 8.32127 8.59843 9.03952 9.55082 10.31625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002637 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.472432 B =10615.765702 C =11055.179151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.406 5.406 3 C -0.388 4.388 4 H 0.097 0.903 5 C 0.013 3.987 6 N -0.850 5.850 7 Si 1.081 2.919 8 H -0.278 1.278 9 H -0.279 1.279 10 H -0.276 1.276 11 C 0.478 3.522 12 O -0.570 6.570 13 C 0.082 3.918 14 N -0.265 5.265 15 O -0.201 6.201 16 C 0.034 3.966 17 H 0.122 0.878 18 C 0.112 3.888 19 N -0.602 5.602 20 C 0.671 3.329 21 O -0.562 6.562 22 O -0.361 6.361 23 C 0.135 3.865 24 C -0.185 4.185 25 C -0.139 4.139 26 C -0.183 4.183 27 C 0.146 3.854 28 C -0.105 4.105 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.280 0.720 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -19.268 7.819 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.124 5.124 3 C -0.517 4.517 4 H 0.115 0.885 5 C -0.198 4.198 6 N -0.482 5.482 7 Si 0.905 3.095 8 H -0.204 1.204 9 H -0.205 1.205 10 H -0.201 1.201 11 C 0.266 3.734 12 O -0.454 6.454 13 C -0.110 4.110 14 N -0.013 5.013 15 O -0.217 6.217 16 C -0.026 4.026 17 H 0.140 0.860 18 C -0.012 4.012 19 N -0.344 5.344 20 C 0.426 3.574 21 O -0.451 6.451 22 O -0.276 6.276 23 C 0.099 3.901 24 C -0.242 4.242 25 C -0.197 4.197 26 C -0.240 4.240 27 C 0.025 3.975 28 C -0.127 4.127 29 H 0.152 0.848 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.943 -17.198 7.919 19.161 hybrid contribution 0.857 -2.314 0.181 2.474 sum -2.086 -19.512 8.099 21.229 Atomic orbital electron populations 1.22016 0.81200 1.03077 1.00728 1.43604 1.05668 1.04926 1.58165 1.20590 1.09100 0.86649 1.35392 0.88513 1.26782 0.95372 1.05082 0.92583 1.70682 1.31037 1.27355 1.19152 0.83330 0.76740 0.72950 0.76453 1.20399 1.20527 1.20123 1.16833 0.87076 0.80905 0.88553 1.90680 1.12342 1.85232 1.57117 1.26420 0.91894 0.97204 0.95521 1.78881 1.13666 0.95840 1.12939 1.91204 1.31348 1.10871 1.88274 1.24514 0.86036 0.92404 0.99654 0.86050 1.21966 0.99065 0.95109 0.85012 1.47326 1.55138 1.24673 1.07240 1.17373 0.78292 0.79757 0.81968 1.90923 1.48109 1.65081 1.41018 1.86299 1.69436 1.36467 1.35419 1.22088 0.96725 0.93292 0.78036 1.22525 1.01660 1.01328 0.98661 1.21851 1.00397 0.94465 1.02947 1.22518 0.95478 1.04176 1.01876 1.21990 0.98425 0.84171 0.92949 1.23275 1.01476 0.89969 0.97988 0.84836 0.89787 0.92737 0.92475 0.90851 0.88851 0.89498 0.92095 0.91118 0.89328 0.91501 0.90129 0.91426 0.89326 0.91126 0.92200 0.89158 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 7.33 59.85 0.44 2.07 16 2 N -0.41 -10.20 2.76 -123.48 -0.34 -10.54 16 3 C -0.39 -10.40 8.90 -15.06 -0.13 -10.53 16 4 H 0.10 2.69 7.75 -52.49 -0.41 2.29 16 5 C 0.01 0.32 4.64 -17.43 -0.08 0.24 16 6 N -0.85 -22.57 12.50 55.51 0.69 -21.88 16 7 Si 1.08 22.32 29.99 -169.99 -5.10 17.22 16 8 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 9 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 C 0.48 11.53 7.61 -12.56 -0.10 11.44 16 12 O -0.57 -15.21 16.81 5.25 0.09 -15.13 16 13 C 0.08 1.60 5.97 -79.50 -0.47 1.13 16 14 N -0.26 -5.08 9.08 35.26 0.32 -4.76 16 15 O -0.20 -3.37 12.17 -11.37 -0.14 -3.51 16 16 C 0.03 0.43 4.88 -24.90 -0.12 0.31 16 17 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.11 1.26 6.53 -3.57 -0.02 1.23 16 19 N -0.60 -8.48 3.36 -176.58 -0.59 -9.07 16 20 C 0.67 9.99 7.91 54.05 0.43 10.42 16 21 O -0.56 -9.55 12.19 -19.29 -0.24 -9.79 16 22 O -0.36 -4.61 9.45 -40.30 -0.38 -4.99 16 23 C 0.14 1.40 1.13 -90.62 -0.10 1.30 16 24 C -0.18 -1.95 8.37 37.16 0.31 -1.64 16 25 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 26 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 27 C 0.15 2.25 6.60 -2.42 -0.02 2.24 16 28 C -0.11 -1.60 3.95 -89.44 -0.35 -1.95 16 29 H 0.13 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.08 1.93 6.40 -51.92 -0.33 1.60 16 31 H 0.05 1.18 7.43 -51.93 -0.39 0.79 16 32 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 33 H 0.28 7.53 6.98 -40.82 -0.28 7.24 16 34 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.08 1.46 7.60 -51.93 -0.39 1.07 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.75 373.20 -6.29 -38.03 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.64 Total: 4.73 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 0.42 Total: 14.07 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.08 Total: -46.26 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.67 Total: -33.42 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.10 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.75 -6.29 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179227883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.379 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds