Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36610 * 119.99870 * 2 1 4 4 H 1.08000 * 119.99788 * 146.63880 * 3 2 1 5 5 C 1.39221 * 120.00018 * 326.62920 * 3 2 1 6 6 N 1.31254 * 119.99960 * 335.88441 * 5 3 2 7 7 Si 1.86798 * 119.99893 * 155.88131 * 5 3 2 8 8 H 1.48495 * 109.47312 * 59.99878 * 7 5 3 9 9 H 1.48504 * 109.46920 * 300.00036 * 7 5 3 10 10 H 1.48496 * 109.47346 * 180.02562 * 7 5 3 11 11 C 1.34771 * 120.00086 * 180.02562 * 2 1 3 12 12 O 1.21628 * 120.00397 * 175.30451 * 11 2 1 13 13 C 1.47336 * 119.99952 * 355.30193 * 11 2 1 14 14 N 1.29131 * 125.81293 * 5.38586 * 13 11 2 15 15 O 1.41402 * 112.85312 * 180.02562 * 14 13 11 16 16 C 1.43968 * 107.65766 * 342.29399 * 15 14 13 17 17 H 1.09001 * 113.34149 * 263.85490 * 16 15 14 18 18 C 1.53721 * 110.35255 * 135.59941 * 16 15 14 19 19 N 1.46680 * 106.91392 * 278.94950 * 18 16 15 20 20 C 1.34773 * 125.31039 * 161.96656 * 19 18 16 21 21 O 1.21517 * 120.00190 * 179.97438 * 20 19 18 22 22 O 1.34632 * 120.00010 * 359.97438 * 20 19 18 23 23 C 1.45201 * 117.00234 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47290 * 59.99517 * 23 22 20 25 25 C 1.52998 * 109.47154 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47075 * 299.99762 * 23 22 20 27 27 C 1.48790 * 109.66380 * 342.30042 * 19 18 16 28 28 C 1.51763 * 125.81666 * 185.70232 * 13 11 2 29 29 H 1.09000 * 113.26687 * 318.39021 * 28 13 11 30 30 H 1.09009 * 109.47290 * 357.40360 * 1 2 3 31 31 H 1.08997 * 109.47402 * 117.40578 * 1 2 3 32 32 H 1.09007 * 109.47174 * 237.40629 * 1 2 3 33 33 H 0.96997 * 119.99892 * 354.00143 * 6 5 3 34 34 H 1.08997 * 109.97166 * 38.32111 * 18 16 15 35 35 H 1.09007 * 109.97066 * 159.54726 * 18 16 15 36 36 H 1.09002 * 109.47227 * 60.00109 * 24 23 22 37 37 H 1.08995 * 109.47254 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47220 * 300.00419 * 24 23 22 39 39 H 1.08998 * 109.47102 * 59.99850 * 25 23 22 40 40 H 1.09000 * 109.46855 * 179.97438 * 25 23 22 41 41 H 1.08997 * 109.47457 * 299.99957 * 25 23 22 42 42 H 1.08994 * 109.47328 * 59.99626 * 26 23 22 43 43 H 1.08996 * 109.47254 * 180.02562 * 26 23 22 44 44 H 1.09007 * 109.47021 * 299.99748 * 26 23 22 45 45 H 1.09004 * 109.54645 * 241.81670 * 27 19 18 46 46 H 1.09002 * 111.04941 * 120.47902 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.1831 0.0000 4 1 3.0945 1.2601 0.5144 5 6 1.6240 2.2894 -0.6632 6 7 0.7739 2.1216 -1.6490 7 14 2.1309 4.0125 -0.1500 8 1 3.5999 4.1634 -0.3057 9 1 1.7582 4.2357 1.2701 10 1 1.4370 5.0081 -1.0057 11 6 2.1388 -1.1671 -0.0005 12 8 3.3521 -1.1689 -0.0867 13 6 1.4059 -2.4410 0.1034 14 7 0.1217 -2.5762 0.1017 15 8 -0.2888 -3.9245 0.2161 16 6 0.8394 -4.7542 -0.1176 17 1 0.8389 -5.0867 -1.1557 18 6 0.9711 -5.9079 0.8897 19 7 1.6478 -5.3662 2.0729 20 6 1.6526 -5.9333 3.2955 21 8 2.2474 -5.3993 4.2107 22 8 0.9983 -7.0915 3.5029 23 6 1.0466 -7.6450 4.8444 24 6 0.4373 -6.6463 5.8304 25 6 0.2518 -8.9516 4.8860 26 6 2.5013 -7.9199 5.2305 27 6 2.3238 -4.0881 1.7218 28 6 2.0315 -3.8172 0.2375 29 1 2.9012 -3.9592 -0.4040 30 1 -0.3634 1.0267 0.0466 31 1 -0.3634 -0.4730 -0.9123 32 1 -0.3634 -0.5536 0.8659 33 1 0.5770 1.2288 -1.9730 34 1 -0.0170 -6.2784 1.1627 35 1 1.5642 -6.7139 0.4572 36 1 -0.5991 -6.4504 5.5554 37 1 0.4732 -7.0619 6.8374 38 1 1.0032 -5.7152 5.8009 39 1 0.6855 -9.6632 4.1835 40 1 0.2885 -9.3673 5.8930 41 1 -0.7845 -8.7554 4.6111 42 1 3.0673 -6.9888 5.2010 43 1 2.5377 -8.3357 6.2374 44 1 2.9355 -8.6314 4.5281 45 1 3.3985 -4.1905 1.8725 46 1 1.9445 -3.2652 2.3276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179227883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = -84.473142 kcal Electronic energy + Delta-G solvation = -30710.554572 eV Core-core repulsion = 26409.981756 eV Total energy + Delta-G solvation = -4300.572816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55628 -41.63661 -40.38522 -38.53286 -37.22967 -37.03849 -35.08782 -34.70636 -33.54357 -31.90846 -29.91012 -28.48091 -28.39855 -28.30132 -27.09841 -25.85243 -24.20151 -22.99333 -22.45282 -20.89325 -20.61053 -19.59569 -19.24143 -18.38315 -17.90186 -17.66470 -17.32235 -16.88569 -16.71274 -16.54630 -16.00677 -15.66335 -15.55065 -15.47960 -14.98950 -14.81002 -14.68996 -14.35473 -14.06142 -13.86128 -13.76365 -13.48449 -13.42763 -13.36301 -13.13129 -12.99485 -12.92246 -12.89848 -12.71087 -12.61365 -12.52320 -12.34216 -12.10185 -11.91133 -11.82518 -11.44944 -11.23132 -11.10479 -10.86273 -10.80153 -10.05694 -10.03084 -8.95074 -6.28431 -0.14599 0.81219 1.53458 1.56216 1.58606 1.67023 1.84518 2.07299 2.19661 2.52554 2.69326 2.88078 3.00546 3.13013 3.21205 3.30063 3.58724 3.72420 3.76873 3.92002 3.98617 4.14076 4.20194 4.31725 4.36157 4.41558 4.49626 4.52109 4.52653 4.59094 4.63212 4.72612 4.74129 4.81338 4.81968 4.86622 4.87211 5.12592 5.25387 5.30610 5.37477 5.58607 5.71078 5.96502 6.17450 6.37478 6.62663 7.08382 7.08463 7.58369 8.29103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002637 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.472432 B =10615.765702 C =11055.179151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.428 5.428 3 C -0.424 4.424 4 H 0.074 0.926 5 C -0.017 4.017 6 N -0.868 5.868 7 Si 1.128 2.872 8 H -0.270 1.270 9 H -0.264 1.264 10 H -0.271 1.271 11 C 0.479 3.521 12 O -0.600 6.600 13 C 0.071 3.929 14 N -0.266 5.266 15 O -0.199 6.199 16 C 0.039 3.961 17 H 0.163 0.837 18 C 0.114 3.886 19 N -0.605 5.605 20 C 0.667 3.333 21 O -0.591 6.591 22 O -0.358 6.358 23 C 0.123 3.877 24 C -0.182 4.182 25 C -0.133 4.133 26 C -0.179 4.179 27 C 0.149 3.851 28 C -0.099 4.099 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.268 0.732 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -22.150 7.917 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.146 5.146 3 C -0.552 4.552 4 H 0.092 0.908 5 C -0.222 4.222 6 N -0.500 5.500 7 Si 0.946 3.054 8 H -0.195 1.195 9 H -0.189 1.189 10 H -0.196 1.196 11 C 0.269 3.731 12 O -0.485 6.485 13 C -0.122 4.122 14 N -0.011 5.011 15 O -0.219 6.219 16 C -0.019 4.019 17 H 0.181 0.819 18 C -0.008 4.008 19 N -0.346 5.346 20 C 0.422 3.578 21 O -0.482 6.482 22 O -0.273 6.273 23 C 0.087 3.913 24 C -0.240 4.240 25 C -0.190 4.190 26 C -0.236 4.236 27 C 0.027 3.973 28 C -0.120 4.120 29 H 0.170 0.830 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.810 -20.088 8.005 21.957 hybrid contribution 1.077 -1.685 0.225 2.013 sum -2.733 -21.773 8.230 23.436 Atomic orbital electron populations 1.21885 0.79744 1.02480 1.01187 1.43785 1.06624 1.04972 1.59189 1.20556 1.09336 0.88291 1.37057 0.90818 1.28115 0.94476 1.08073 0.91564 1.70794 1.32534 1.26461 1.20189 0.82776 0.76867 0.68854 0.76940 1.19537 1.18897 1.19608 1.17362 0.87005 0.82170 0.86575 1.90638 1.13935 1.86332 1.57629 1.25939 0.92516 0.97128 0.96638 1.78808 1.13564 0.98263 1.10495 1.91183 1.32811 1.09780 1.88169 1.25009 0.82987 0.91547 1.02379 0.81943 1.22246 1.00104 0.95010 0.83480 1.47371 1.55142 1.24134 1.07996 1.17547 0.78179 0.80219 0.81811 1.90920 1.49278 1.65962 1.42062 1.86315 1.68732 1.35248 1.36962 1.22506 0.97549 0.94377 0.76871 1.22495 1.00896 1.00171 1.00390 1.21875 0.99804 0.92575 1.04704 1.22469 0.94816 1.02805 1.03535 1.21800 0.98623 0.84124 0.92765 1.23334 1.03037 0.87692 0.97978 0.82979 0.90943 0.92446 0.91480 0.92167 0.87976 0.85478 0.92201 0.88681 0.92697 0.90682 0.87779 0.91264 0.92490 0.88854 0.91427 0.88856 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.10 7.33 127.77 0.94 5.04 16 2 N -0.43 -22.26 2.76 -662.82 -1.83 -24.08 16 3 C -0.42 -23.67 8.90 84.19 0.75 -22.92 16 4 H 0.07 4.34 7.75 -2.91 -0.02 4.32 16 5 C -0.02 -0.86 4.64 85.02 0.39 -0.47 16 6 N -0.87 -47.13 12.50 21.71 0.27 -46.86 16 7 Si 1.13 45.56 29.99 68.60 2.06 47.61 16 8 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 9 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 11 C 0.48 23.81 7.61 86.64 0.66 24.47 16 12 O -0.60 -33.08 16.81 -4.12 -0.07 -33.15 16 13 C 0.07 2.75 5.97 45.69 0.27 3.02 16 14 N -0.27 -9.96 9.08 -42.37 -0.38 -10.35 16 15 O -0.20 -6.20 12.17 -38.34 -0.47 -6.67 16 16 C 0.04 0.87 4.88 31.78 0.15 1.02 16 17 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 18 C 0.11 2.12 6.53 86.59 0.57 2.69 16 19 N -0.60 -16.07 3.36 -943.00 -3.17 -19.24 16 20 C 0.67 19.37 7.91 129.79 1.03 20.39 16 21 O -0.59 -20.54 12.19 19.79 0.24 -20.30 16 22 O -0.36 -8.48 9.45 -55.42 -0.52 -9.00 16 23 C 0.12 2.31 1.13 -10.80 -0.01 2.29 16 24 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 25 C -0.13 -1.48 8.85 71.98 0.64 -0.84 16 26 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 27 C 0.15 4.56 6.60 86.17 0.57 5.13 16 28 C -0.10 -2.84 3.95 -10.03 -0.04 -2.88 16 29 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.07 3.43 6.40 -2.38 -0.02 3.41 16 31 H 0.06 2.53 7.43 -2.39 -0.02 2.51 16 32 H 0.07 2.84 6.95 -2.38 -0.02 2.83 16 33 H 0.27 14.86 6.98 -92.71 -0.65 14.21 16 34 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 35 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.50 5.88 -2.39 -0.01 1.49 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.05 1.81 7.60 -2.39 -0.02 1.80 16 Total: -1.00 -73.02 373.20 4.37 -68.65 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.12 Total: 22.19 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 7.12 Total: 31.20 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -5.11 Total: -100.53 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -0.82 Total: -69.13 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.06 Total: 47.61 kcal Total: -73.02 4.37 -68.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179227883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.821 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds