Wall clock time and date at job start Tue Mar 31 2020 22:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00095 * 2 1 4 4 C 1.50703 * 109.47470 * 270.00656 * 3 2 1 5 5 C 1.41378 * 126.80293 * 94.99525 * 4 3 2 6 6 C 1.35446 * 103.98370 * 180.02562 * 5 4 3 7 7 O 1.34038 * 106.44796 * 0.02562 * 6 5 4 8 8 N 1.20915 * 111.56715 * 359.70260 * 7 6 5 9 9 C 1.34770 * 119.99847 * 180.02562 * 2 1 3 10 10 O 1.21284 * 120.00122 * 179.97438 * 9 2 1 11 11 C 1.50701 * 120.00315 * 359.97438 * 9 2 1 12 12 H 1.09001 * 109.47011 * 60.00005 * 11 9 2 13 13 C 1.50702 * 109.46811 * 300.00283 * 11 9 2 14 14 H 1.08002 * 120.00299 * 120.00317 * 13 11 9 15 15 C 1.37884 * 119.99942 * 299.71876 * 13 11 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.46496 * 109.47231 * 180.02562 * 11 9 2 22 22 C 1.34773 * 120.00113 * 204.99491 * 21 11 9 23 23 O 1.21512 * 119.99952 * 0.02562 * 22 21 11 24 24 O 1.34634 * 120.00541 * 179.97438 * 22 21 11 25 25 C 1.45197 * 117.00473 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.46978 * 60.00598 * 25 24 22 27 27 C 1.53007 * 109.47202 * 180.02562 * 25 24 22 28 28 C 1.53000 * 109.47624 * 300.00474 * 25 24 22 29 29 H 1.09000 * 109.46343 * 269.99396 * 1 2 3 30 30 H 1.08995 * 109.46955 * 29.99337 * 1 2 3 31 31 H 1.09000 * 109.47074 * 150.00010 * 1 2 3 32 32 H 1.09003 * 109.46732 * 30.00248 * 3 2 1 33 33 H 1.09000 * 109.47398 * 150.00243 * 3 2 1 34 34 H 1.08001 * 128.00558 * 0.04458 * 5 4 3 35 35 H 1.08008 * 126.77636 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 0.97005 * 120.00075 * 25.00159 * 21 11 9 38 38 H 1.09002 * 109.47596 * 59.99772 * 26 25 24 39 39 H 1.08994 * 109.47297 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.46889 * 299.99674 * 26 25 24 41 41 H 1.08993 * 109.47065 * 60.00262 * 27 25 24 42 42 H 1.08997 * 109.46993 * 180.02562 * 27 25 24 43 43 H 1.09002 * 109.46896 * 299.99937 * 27 25 24 44 44 H 1.08997 * 109.46858 * 59.99502 * 28 25 24 45 45 H 1.08994 * 109.47462 * 179.97438 * 28 25 24 46 46 H 1.09005 * 109.46658 * 299.99981 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 6 1.6596 2.5928 -2.1863 6 6 2.2989 2.6539 -3.3788 7 8 3.3682 1.8520 -3.2777 8 7 3.4374 1.3391 -2.1849 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 1 0.7584 -2.5298 -0.8903 13 6 0.5195 -2.5523 1.2303 14 1 -0.5515 -2.6510 1.1316 15 6 1.0950 -2.5054 2.4824 16 7 2.3991 -2.3852 2.6025 17 14 0.0223 -2.6123 4.0079 18 1 -1.4008 -2.7426 3.6042 19 1 0.4193 -3.7974 4.8101 20 1 0.1958 -1.3827 4.8223 21 7 2.3374 -3.5858 -0.0005 22 6 1.9713 -4.7854 -0.4937 23 8 0.8517 -4.9433 -0.9388 24 8 2.8463 -5.8086 -0.4942 25 6 2.3836 -7.0715 -1.0413 26 6 1.9791 -6.8760 -2.5039 27 6 3.5074 -8.1064 -0.9565 28 6 1.1767 -7.5631 -0.2397 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1384 0.5138 34 1 0.7564 3.1049 -1.8889 35 1 2.0047 3.2336 -4.2413 36 1 2.8039 -2.3518 3.4834 37 1 3.2313 -3.4597 0.3545 38 1 2.8389 -6.5258 -3.0751 39 1 1.6322 -7.8240 -2.9148 40 1 1.1783 -6.1388 -2.5639 41 1 3.7952 -8.2456 0.0854 42 1 3.1602 -9.0542 -1.3677 43 1 4.3674 -7.7564 -1.5275 44 1 0.3760 -6.8260 -0.2998 45 1 0.8291 -8.5109 -0.6508 46 1 1.4650 -7.7024 0.8022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180781486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:10 Heat of formation + Delta-G solvation = -45.839822 kcal Electronic energy + Delta-G solvation = -31163.976275 eV Core-core repulsion = 26865.078725 eV Total energy + Delta-G solvation = -4298.897549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.74205 -39.83548 -38.87522 -36.45613 -35.22252 -33.96251 -33.50199 -33.27398 -31.81581 -31.49566 -28.71425 -27.07371 -26.97162 -26.94581 -25.50108 -23.60764 -22.97196 -21.59874 -20.76624 -19.19056 -18.71003 -17.66658 -17.44224 -17.21823 -16.82469 -15.87333 -15.43025 -15.28894 -15.14574 -15.09323 -14.74260 -14.17619 -13.84270 -13.77198 -13.50930 -13.31113 -12.92923 -12.78617 -12.43750 -12.18447 -12.04637 -11.88668 -11.84027 -11.71440 -11.48291 -11.46372 -11.30495 -11.11236 -11.05882 -10.89665 -10.75072 -10.73824 -10.21438 -10.06351 -9.99121 -9.66181 -9.50853 -9.18638 -8.92238 -8.42960 -7.93260 -7.67359 -6.25021 -4.38351 1.67949 2.35946 3.10341 3.20882 3.26813 3.29790 3.42885 3.88695 3.95998 4.10287 4.26458 4.47048 4.75276 4.99343 5.13307 5.15842 5.25574 5.28711 5.33478 5.42447 5.59669 5.73596 5.77460 5.82049 5.84506 5.91097 5.97954 6.05318 6.13789 6.16325 6.24430 6.25777 6.28367 6.32377 6.54221 6.63715 6.70159 6.80643 7.25970 7.34756 7.64700 7.70074 7.86820 8.27428 8.52913 8.61988 8.86902 9.29488 9.39394 9.63708 10.78037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004283 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.581104 B = 6536.247613 C = 8494.420648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.611 5.611 3 C 0.197 3.803 4 C 0.002 3.998 5 C -0.227 4.227 6 C -0.075 4.075 7 O 0.098 5.902 8 N -0.338 5.338 9 C 0.544 3.456 10 O -0.539 6.539 11 C 0.271 3.729 12 H 0.066 0.934 13 C -0.532 4.532 14 H 0.073 0.927 15 C 0.077 3.923 16 N -0.857 5.857 17 Si 0.897 3.103 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.661 5.661 22 C 0.646 3.354 23 O -0.591 6.591 24 O -0.374 6.374 25 C 0.137 3.863 26 C -0.180 4.180 27 C -0.139 4.139 28 C -0.181 4.181 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.212 0.788 36 H 0.267 0.733 37 H 0.406 0.594 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 4.088 -8.165 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.347 5.347 3 C 0.072 3.928 4 C -0.159 4.159 5 C -0.248 4.248 6 C -0.157 4.157 7 O 0.030 5.970 8 N -0.040 5.040 9 C 0.334 3.666 10 O -0.414 6.414 11 C 0.166 3.834 12 H 0.084 0.916 13 C -0.571 4.571 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.492 5.492 17 Si 0.724 3.276 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.209 1.209 21 N -0.318 5.318 22 C 0.398 3.602 23 O -0.483 6.483 24 O -0.289 6.289 25 C 0.099 3.901 26 C -0.237 4.237 27 C -0.196 4.196 28 C -0.238 4.238 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.186 0.814 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.243 0.757 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.357 3.140 -8.070 8.765 hybrid contribution -1.054 0.501 1.250 1.710 sum -2.411 3.641 -6.820 8.098 Atomic orbital electron populations 1.21659 0.79356 1.01132 1.02065 1.47453 1.06813 1.04258 1.76166 1.19436 0.99439 0.86666 0.87265 1.24366 0.92634 0.98236 1.00690 1.22740 1.03806 1.04140 0.94147 1.25961 0.90246 0.98379 1.01117 1.84895 1.39594 1.44846 1.27715 1.74018 1.21980 1.15877 0.92092 1.21164 0.87505 0.85525 0.72415 1.90554 1.14601 1.87051 1.49189 1.18265 0.86312 0.80378 0.98396 0.91606 1.21189 0.93553 1.53230 0.89135 0.90905 1.25100 0.95076 0.93389 0.99467 1.69945 1.09154 1.45687 1.24375 0.86453 0.80856 0.77760 0.82545 1.19341 1.20846 1.20852 1.45089 1.18625 1.06959 1.61114 1.18031 0.82506 0.81248 0.78372 1.90750 1.20693 1.83244 1.53659 1.86305 1.44380 1.20018 1.78217 1.21803 0.94390 0.80720 0.93186 1.22494 1.03277 1.03249 0.94720 1.21825 0.97867 0.96952 1.02959 1.22487 0.99422 1.02192 0.99688 0.92114 0.93603 0.90718 0.89112 0.88544 0.81372 0.77189 0.92275 0.75716 0.92679 0.92044 0.89127 0.91747 0.90876 0.91844 0.88887 0.92179 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 9.15 59.85 0.55 2.21 16 2 N -0.61 -12.03 2.86 -182.95 -0.52 -12.55 16 3 C 0.20 3.37 5.99 -5.19 -0.03 3.34 16 4 C 0.00 0.03 6.91 -82.10 -0.57 -0.54 16 5 C -0.23 -2.67 11.12 -39.38 -0.44 -3.10 16 6 C -0.08 -0.80 12.30 29.74 0.37 -0.43 16 7 O 0.10 1.46 11.20 17.18 0.19 1.66 16 8 N -0.34 -6.18 12.07 33.42 0.40 -5.78 16 9 C 0.54 12.98 5.93 -10.99 -0.07 12.92 16 10 O -0.54 -14.35 15.37 5.55 0.09 -14.26 16 11 C 0.27 6.63 1.78 -70.23 -0.12 6.51 16 12 H 0.07 1.61 6.84 -51.93 -0.35 1.26 16 13 C -0.53 -13.33 6.70 -34.44 -0.23 -13.56 16 14 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.08 1.98 5.23 -17.82 -0.09 1.88 16 16 N -0.86 -23.00 11.58 55.43 0.64 -22.35 16 17 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 N -0.66 -16.59 4.35 -61.01 -0.27 -16.86 16 22 C 0.65 15.47 8.01 54.05 0.43 15.90 16 23 O -0.59 -14.50 11.54 -19.28 -0.22 -14.72 16 24 O -0.37 -8.03 9.94 -40.31 -0.40 -8.43 16 25 C 0.14 2.34 1.13 -90.62 -0.10 2.24 16 26 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 27 C -0.14 -1.86 8.85 37.16 0.33 -1.53 16 28 C -0.18 -3.04 8.37 37.16 0.31 -2.73 16 29 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 30 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 1.29 6.14 -51.93 -0.32 0.97 16 32 H 0.09 1.21 8.07 -51.93 -0.42 0.80 16 33 H 0.10 1.90 7.42 -51.93 -0.39 1.52 16 34 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.21 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.41 10.72 7.58 -40.82 -0.31 10.41 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.69 5.88 -51.93 -0.31 1.39 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.84 5.88 -51.93 -0.31 1.54 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -32.80 382.61 -5.28 -38.08 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.58 Total: 13.83 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 0.65 Total: 20.53 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.26 Total: -57.54 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.35 Total: -35.76 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.80 -5.28 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.761 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds