Wall clock time and date at job start Tue Mar 31 2020 22:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00095 * 2 1 4 4 C 1.50703 * 109.47470 * 270.00656 * 3 2 1 5 5 C 1.41378 * 126.80293 * 94.99525 * 4 3 2 6 6 C 1.35446 * 103.98370 * 180.02562 * 5 4 3 7 7 O 1.34038 * 106.44796 * 0.02562 * 6 5 4 8 8 N 1.20915 * 111.56715 * 359.70260 * 7 6 5 9 9 C 1.34770 * 119.99847 * 180.02562 * 2 1 3 10 10 O 1.21284 * 120.00122 * 179.97438 * 9 2 1 11 11 C 1.50701 * 120.00315 * 359.97438 * 9 2 1 12 12 H 1.09001 * 109.47011 * 60.00005 * 11 9 2 13 13 C 1.50702 * 109.46811 * 300.00283 * 11 9 2 14 14 H 1.08002 * 120.00299 * 120.00317 * 13 11 9 15 15 C 1.37884 * 119.99942 * 299.71876 * 13 11 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.46496 * 109.47231 * 180.02562 * 11 9 2 22 22 C 1.34773 * 120.00113 * 204.99491 * 21 11 9 23 23 O 1.21512 * 119.99952 * 0.02562 * 22 21 11 24 24 O 1.34634 * 120.00541 * 179.97438 * 22 21 11 25 25 C 1.45197 * 117.00473 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.46978 * 60.00598 * 25 24 22 27 27 C 1.53007 * 109.47202 * 180.02562 * 25 24 22 28 28 C 1.53000 * 109.47624 * 300.00474 * 25 24 22 29 29 H 1.09000 * 109.46343 * 269.99396 * 1 2 3 30 30 H 1.08995 * 109.46955 * 29.99337 * 1 2 3 31 31 H 1.09000 * 109.47074 * 150.00010 * 1 2 3 32 32 H 1.09003 * 109.46732 * 30.00248 * 3 2 1 33 33 H 1.09000 * 109.47398 * 150.00243 * 3 2 1 34 34 H 1.08001 * 128.00558 * 0.04458 * 5 4 3 35 35 H 1.08008 * 126.77636 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 0.97005 * 120.00075 * 25.00159 * 21 11 9 38 38 H 1.09002 * 109.47596 * 59.99772 * 26 25 24 39 39 H 1.08994 * 109.47297 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.46889 * 299.99674 * 26 25 24 41 41 H 1.08993 * 109.47065 * 60.00262 * 27 25 24 42 42 H 1.08997 * 109.46993 * 180.02562 * 27 25 24 43 43 H 1.09002 * 109.46896 * 299.99937 * 27 25 24 44 44 H 1.08997 * 109.46858 * 59.99502 * 28 25 24 45 45 H 1.08994 * 109.47462 * 179.97438 * 28 25 24 46 46 H 1.09005 * 109.46658 * 299.99981 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 6 1.6596 2.5928 -2.1863 6 6 2.2989 2.6539 -3.3788 7 8 3.3682 1.8520 -3.2777 8 7 3.4374 1.3391 -2.1849 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 1 0.7584 -2.5298 -0.8903 13 6 0.5195 -2.5523 1.2303 14 1 -0.5515 -2.6510 1.1316 15 6 1.0950 -2.5054 2.4824 16 7 2.3991 -2.3852 2.6025 17 14 0.0223 -2.6123 4.0079 18 1 -1.4008 -2.7426 3.6042 19 1 0.4193 -3.7974 4.8101 20 1 0.1958 -1.3827 4.8223 21 7 2.3374 -3.5858 -0.0005 22 6 1.9713 -4.7854 -0.4937 23 8 0.8517 -4.9433 -0.9388 24 8 2.8463 -5.8086 -0.4942 25 6 2.3836 -7.0715 -1.0413 26 6 1.9791 -6.8760 -2.5039 27 6 3.5074 -8.1064 -0.9565 28 6 1.1767 -7.5631 -0.2397 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1384 0.5138 34 1 0.7564 3.1049 -1.8889 35 1 2.0047 3.2336 -4.2413 36 1 2.8039 -2.3518 3.4834 37 1 3.2313 -3.4597 0.3545 38 1 2.8389 -6.5258 -3.0751 39 1 1.6322 -7.8240 -2.9148 40 1 1.1783 -6.1388 -2.5639 41 1 3.7952 -8.2456 0.0854 42 1 3.1602 -9.0542 -1.3677 43 1 4.3674 -7.7564 -1.5275 44 1 0.3760 -6.8260 -0.2998 45 1 0.8291 -8.5109 -0.6508 46 1 1.4650 -7.7024 0.8022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180781486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:10 Heat of formation + Delta-G solvation = -69.195488 kcal Electronic energy + Delta-G solvation = -31164.989053 eV Core-core repulsion = 26865.078725 eV Total energy + Delta-G solvation = -4299.910327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.86043 -41.57447 -40.58825 -38.11330 -36.77446 -35.86767 -35.00950 -34.59319 -33.72772 -32.54449 -30.37707 -28.51411 -28.29594 -28.24045 -27.08847 -25.42886 -24.03996 -23.11437 -22.03649 -20.93670 -20.29093 -19.21914 -18.73842 -18.61635 -18.45418 -17.50994 -17.04721 -16.96854 -16.82457 -16.68288 -16.29128 -15.66022 -15.37414 -15.22077 -15.05531 -14.51622 -14.34270 -14.22787 -13.99238 -13.60508 -13.46206 -13.26001 -13.17175 -13.10695 -12.92295 -12.83987 -12.78489 -12.78072 -12.67587 -12.39454 -12.16592 -12.14583 -12.05904 -11.79802 -11.24901 -11.23557 -10.99714 -10.79107 -10.51157 -10.31597 -9.64290 -9.48021 -8.21024 -6.40023 0.72735 1.25033 1.35315 1.42250 1.52429 1.54516 2.08615 2.12353 2.38327 2.55049 2.64534 3.08309 3.35136 3.64717 3.73736 3.85449 3.88001 4.02776 4.19799 4.31976 4.46163 4.50117 4.54523 4.56039 4.64312 4.65833 4.75950 4.79332 4.83498 4.88217 4.89658 4.92324 4.96363 5.12145 5.20148 5.24428 5.36170 5.41118 5.59865 5.64316 5.77382 5.85773 5.94333 6.53454 6.68546 6.91906 7.31756 7.51414 7.59237 7.74755 8.80920 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004283 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.581104 B = 6536.247613 C = 8494.420648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.608 5.608 3 C 0.197 3.803 4 C -0.022 4.022 5 C -0.223 4.223 6 C -0.056 4.056 7 O 0.088 5.912 8 N -0.396 5.396 9 C 0.540 3.460 10 O -0.578 6.578 11 C 0.269 3.731 12 H 0.057 0.943 13 C -0.531 4.531 14 H 0.072 0.928 15 C 0.039 3.961 16 N -0.885 5.885 17 Si 0.955 3.045 18 H -0.260 1.260 19 H -0.292 1.292 20 H -0.275 1.275 21 N -0.671 5.671 22 C 0.644 3.356 23 O -0.602 6.602 24 O -0.385 6.385 25 C 0.117 3.883 26 C -0.174 4.174 27 C -0.132 4.132 28 C -0.176 4.176 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.207 0.793 35 H 0.266 0.734 36 H 0.264 0.736 37 H 0.397 0.603 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 4.614 -9.176 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.342 5.342 3 C 0.073 3.927 4 C -0.181 4.181 5 C -0.244 4.244 6 C -0.137 4.137 7 O 0.020 5.980 8 N -0.100 5.100 9 C 0.329 3.671 10 O -0.457 6.457 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.570 4.570 14 H 0.090 0.910 15 C -0.166 4.166 16 N -0.520 5.520 17 Si 0.781 3.219 18 H -0.183 1.183 19 H -0.218 1.218 20 H -0.201 1.201 21 N -0.327 5.327 22 C 0.397 3.603 23 O -0.495 6.495 24 O -0.300 6.300 25 C 0.081 3.919 26 C -0.231 4.231 27 C -0.189 4.189 28 C -0.233 4.233 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.282 0.718 36 H 0.073 0.927 37 H 0.232 0.768 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.242 3.685 -9.095 10.335 hybrid contribution -0.517 0.328 1.435 1.560 sum -3.759 4.013 -7.660 9.430 Atomic orbital electron populations 1.21809 0.77280 1.02825 1.02430 1.47491 1.08176 1.04027 1.74537 1.19556 0.98178 0.86327 0.88650 1.24418 0.93693 0.99727 1.00251 1.23129 1.04584 1.03195 0.93530 1.27001 0.87880 0.96405 1.02383 1.84824 1.41256 1.45430 1.26498 1.74037 1.24126 1.18196 0.93630 1.21047 0.87029 0.86553 0.72426 1.90521 1.16105 1.87768 1.51322 1.18284 0.86409 0.80973 0.97861 0.92515 1.21261 0.93410 1.52866 0.89479 0.91034 1.25727 0.95923 0.93116 1.01857 1.70090 1.10581 1.46831 1.24487 0.85544 0.79720 0.77400 0.79273 1.18341 1.21831 1.20063 1.45152 1.18186 1.07798 1.61541 1.18103 0.82660 0.81514 0.78040 1.90740 1.21179 1.83562 1.54001 1.86313 1.44254 1.21026 1.78456 1.22431 0.96208 0.79597 0.93684 1.22426 1.02255 1.04245 0.94197 1.21861 0.96634 0.97056 1.03329 1.22428 0.98180 1.02950 0.99719 0.92350 0.88834 0.92114 0.84931 0.92320 0.77614 0.71844 0.92716 0.76827 0.92461 0.88367 0.92345 0.91937 0.87169 0.91488 0.92364 0.88354 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.13 9.15 127.77 1.17 4.30 16 2 N -0.61 -24.18 2.86 -851.12 -2.43 -26.62 16 3 C 0.20 6.76 5.99 85.63 0.51 7.27 16 4 C -0.02 -0.69 6.91 43.58 0.30 -0.39 16 5 C -0.22 -4.51 11.12 22.40 0.25 -4.26 16 6 C -0.06 -0.99 12.30 67.17 0.83 -0.17 16 7 O 0.09 2.56 11.20 71.66 0.80 3.36 16 8 N -0.40 -14.80 12.07 -49.57 -0.60 -15.40 16 9 C 0.54 26.88 5.93 87.66 0.52 27.40 16 10 O -0.58 -32.69 15.37 -3.04 -0.05 -32.74 16 11 C 0.27 13.76 1.78 43.50 0.08 13.83 16 12 H 0.06 2.93 6.84 -2.39 -0.02 2.91 16 13 C -0.53 -27.22 6.70 25.60 0.17 -27.05 16 14 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 15 C 0.04 2.00 5.23 84.66 0.44 2.44 16 16 N -0.88 -49.03 11.58 21.45 0.25 -48.78 16 17 Si 0.96 41.55 29.54 68.60 2.03 43.58 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 N -0.67 -35.43 4.35 -577.37 -2.51 -37.94 16 22 C 0.64 32.12 8.01 129.79 1.04 33.16 16 23 O -0.60 -30.65 11.54 19.80 0.23 -30.42 16 24 O -0.38 -16.99 9.94 -55.44 -0.55 -17.54 16 25 C 0.12 3.93 1.13 -10.79 -0.01 3.92 16 26 C -0.17 -5.39 8.37 71.98 0.60 -4.79 16 27 C -0.13 -3.24 8.85 71.98 0.64 -2.61 16 28 C -0.18 -5.78 8.37 71.98 0.60 -5.17 16 29 H 0.06 1.88 7.88 -2.39 -0.02 1.87 16 30 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.06 2.10 6.14 -2.39 -0.01 2.08 16 32 H 0.13 3.30 8.07 -2.39 -0.02 3.28 16 33 H 0.06 2.45 7.42 -2.39 -0.02 2.43 16 34 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.27 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 37 H 0.40 22.26 7.58 -92.70 -0.70 21.56 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.20 5.88 -2.39 -0.01 2.19 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.34 5.88 -2.39 -0.01 2.32 16 45 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -78.04 382.61 4.62 -73.42 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: 0.31 Total: 41.17 kcal Atomic # 6 Polarization: 40.75 SS G_CDS: 7.14 Total: 47.89 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.29 Total: -128.74 kcal Atomic # 8 Polarization: -77.76 SS G_CDS: 0.43 Total: -77.33 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -78.04 4.62 -73.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.226 kcal (2) G-P(sol) polarization free energy of solvation -78.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds