Wall clock time and date at job start Wed Apr 1 2020 00:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.39039 * 2 1 4 4 C 1.54388 * 110.33970 * 237.76493 * 2 1 3 5 5 N 1.48146 * 104.61575 * 217.26404 * 4 2 1 6 6 C 1.34776 * 127.83797 * 219.32646 * 5 4 2 7 7 O 1.21553 * 120.00029 * 180.02562 * 6 5 4 8 8 C 1.47851 * 120.00381 * 0.02562 * 6 5 4 9 9 C 1.40125 * 120.95749 * 89.71817 * 8 6 5 10 10 F 1.35097 * 120.52134 * 0.02562 * 9 8 6 11 11 C 1.38431 * 118.95390 * 179.75901 * 9 8 6 12 12 N 1.31769 * 120.93311 * 0.52934 * 11 9 8 13 13 C 1.31766 * 122.13831 * 359.72236 * 12 11 9 14 14 C 1.38429 * 120.93314 * 0.02562 * 13 12 11 15 15 F 1.35101 * 120.51894 * 179.97438 * 14 13 12 16 16 C 1.48142 * 104.32318 * 39.58929 * 5 4 2 17 17 C 1.54285 * 110.33885 * 122.23198 * 2 1 3 18 18 C 1.52997 * 110.34541 * 359.97438 * 17 2 1 19 19 C 1.53003 * 110.34059 * 237.73938 * 17 2 1 20 20 N 1.46504 * 109.46998 * 180.02562 * 19 17 2 21 21 C 1.36939 * 119.99873 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99780 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99680 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00239 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99737 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47135 * 59.99338 * 25 23 21 27 27 H 1.48503 * 109.46933 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46934 * 299.99207 * 25 23 21 29 29 H 1.08998 * 109.47601 * 180.77742 * 1 2 3 30 30 H 1.09002 * 109.47052 * 300.78414 * 1 2 3 31 31 H 1.09011 * 109.46763 * 60.77594 * 1 2 3 32 32 H 1.09001 * 110.40633 * 98.48802 * 4 2 1 33 33 H 1.08997 * 110.51158 * 336.09897 * 4 2 1 34 34 H 1.07999 * 119.52955 * 180.25503 * 11 9 8 35 35 H 1.08007 * 119.53077 * 179.97438 * 13 12 11 36 36 H 1.09002 * 110.40643 * 79.19769 * 16 5 4 37 37 H 1.09004 * 110.41038 * 201.62402 * 16 5 4 38 38 H 1.09000 * 109.47374 * 59.99673 * 18 17 2 39 39 H 1.09003 * 109.47337 * 180.02562 * 18 17 2 40 40 H 1.09000 * 109.46819 * 299.99959 * 18 17 2 41 41 H 1.08996 * 109.46881 * 299.99850 * 19 17 2 42 42 H 1.08992 * 109.47157 * 60.00351 * 19 17 2 43 43 H 0.96997 * 119.99986 * 0.02562 * 20 19 17 44 44 H 0.97003 * 119.99756 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7722 -1.2245 5 7 3.2663 -1.4818 -0.7226 6 6 4.4407 -1.6707 -1.3563 7 8 5.3370 -2.2802 -0.8062 8 6 4.6388 -1.1367 -2.7207 9 6 5.1450 0.1542 -2.9231 10 9 5.4638 0.9389 -1.8706 11 6 5.3186 0.6105 -4.2184 12 7 5.0056 -0.1461 -5.2508 13 6 4.5222 -1.3634 -5.1067 14 6 4.3200 -1.9045 -3.8487 15 9 3.8233 -3.1533 -3.7107 16 6 2.8800 -1.9423 0.6314 17 6 2.0663 -0.7716 1.2237 18 6 0.9061 -1.3030 2.0677 19 6 2.9691 0.1306 2.0674 20 7 3.4676 -0.6203 3.2224 21 6 4.2998 -0.0144 4.1256 22 1 4.5889 1.0167 3.9862 23 6 4.7725 -0.7261 5.2197 24 7 4.4205 -1.9829 5.3892 25 14 5.9071 0.1006 6.4521 26 1 5.2162 1.2686 7.0551 27 1 6.2669 -0.8667 7.5199 28 1 7.1399 0.5570 5.7613 29 1 -0.3634 -1.0275 0.0139 30 1 -0.3633 0.5260 0.8829 31 1 -0.3633 0.5018 -0.8970 32 1 2.3401 -0.0796 -2.0205 33 1 1.3243 -1.4861 -1.5812 34 1 5.7121 1.6024 -4.3851 35 1 4.2794 -1.9469 -5.9826 36 1 2.2638 -2.8390 0.5665 37 1 3.7671 -2.1327 1.2357 38 1 0.2951 -1.9742 1.4641 39 1 1.3004 -1.8446 2.9276 40 1 0.2960 -0.4683 2.4131 41 1 3.8111 0.4688 1.4636 42 1 2.3998 0.9935 2.4129 43 1 3.2082 -1.5465 3.3474 44 1 4.7506 -2.4801 6.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181648173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:00 Heat of formation + Delta-G solvation = -61.639200 kcal Electronic energy + Delta-G solvation = -30590.304511 eV Core-core repulsion = 26179.634333 eV Total energy + Delta-G solvation = -4410.670177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.55408 -49.45648 -40.79189 -40.01504 -38.29780 -34.84299 -33.50470 -32.80244 -31.56727 -31.25703 -29.64615 -27.44156 -26.24186 -25.68488 -24.70335 -24.04476 -23.30417 -21.28021 -20.26289 -18.62867 -18.59656 -18.47520 -17.91217 -17.01484 -16.87377 -16.36389 -16.18038 -15.81053 -15.73939 -15.48567 -14.93401 -14.49676 -14.35958 -14.18240 -13.99178 -13.76888 -13.65861 -13.61870 -13.06080 -12.93045 -12.76142 -12.53241 -12.13320 -12.00490 -11.59836 -11.47939 -11.26603 -10.98081 -10.79959 -10.77870 -10.60801 -10.36223 -10.29119 -10.22012 -9.94649 -9.92383 -9.58109 -9.47136 -8.84917 -8.75693 -6.88566 -5.72797 -3.01039 0.11873 0.17445 2.25141 2.63319 2.84763 3.12583 3.47465 3.49403 3.51810 3.52792 3.76228 3.90561 4.16732 4.42497 4.47514 4.58989 4.70734 4.80411 4.93662 4.98803 5.19827 5.20901 5.29374 5.30517 5.44217 5.52542 5.63627 5.66812 5.80022 5.84471 5.90376 5.97791 6.06535 6.12794 6.17032 6.20930 6.39813 6.48608 6.68436 6.77380 6.85640 7.04938 7.39513 7.73426 7.90451 8.46052 9.57404 10.13690 10.48487 11.50095 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.003565 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.098191 B = 7851.978240 C = 8686.115316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.103 3.897 5 N -0.605 5.605 6 C 0.581 3.419 7 O -0.504 6.504 8 C -0.144 4.144 9 C 0.115 3.885 10 F -0.104 7.104 11 C 0.067 3.933 12 N -0.420 5.420 13 C 0.066 3.934 14 C 0.111 3.889 15 F -0.110 7.110 16 C 0.114 3.886 17 C -0.075 4.075 18 C -0.134 4.134 19 C 0.168 3.832 20 N -0.729 5.729 21 C -0.239 4.239 22 H 0.068 0.932 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 3.250 -23.137 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.338 5.338 6 C 0.365 3.635 7 O -0.378 6.378 8 C -0.156 4.156 9 C 0.092 3.908 10 F -0.082 7.082 11 C -0.091 4.091 12 N -0.127 5.127 13 C -0.093 4.093 14 C 0.089 3.911 15 F -0.088 7.088 16 C -0.007 4.007 17 C -0.076 4.076 18 C -0.191 4.191 19 C 0.041 3.959 20 N -0.374 5.374 21 C -0.370 4.370 22 H 0.086 0.914 23 C -0.208 4.208 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.201 0.799 35 H 0.200 0.800 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.020 3.307 -23.567 24.811 hybrid contribution 0.494 -0.254 1.822 1.904 sum -6.526 3.053 -21.745 22.908 Atomic orbital electron populations 1.21892 0.93857 1.02295 1.01820 1.22138 0.96266 0.99765 0.93475 0.89780 1.22572 0.86758 0.95472 0.97160 1.48801 1.12040 1.54715 1.18226 1.17109 0.81892 0.80675 0.83782 1.90917 1.40702 1.40446 1.65737 1.20679 1.04388 0.94856 0.95712 1.18681 0.98442 0.87615 0.86043 1.91663 1.89382 1.72206 1.54991 1.23040 0.99305 1.01485 0.85317 1.67649 1.07966 1.04348 1.32706 1.23001 0.98257 0.92723 0.95288 1.18627 0.97763 0.81395 0.93319 1.91610 1.84110 1.36650 1.96465 1.22678 1.00757 0.96118 0.81194 1.21723 0.96071 0.95285 0.94555 1.21868 0.96474 1.00984 0.99779 1.20654 0.93704 0.92941 0.88629 1.42375 1.57311 1.12851 1.24840 1.19151 1.20531 0.95718 1.01639 0.91384 1.24705 1.01019 0.96057 0.98977 1.69637 1.49016 1.08421 1.31104 0.86281 0.80834 0.78141 0.81012 1.21325 1.21684 1.21297 0.91943 0.91539 0.93024 0.91228 0.90495 0.79914 0.80023 0.90958 0.87895 0.93017 0.91139 0.92012 0.96468 0.96059 0.78105 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.93 37.16 0.29 -1.00 16 2 C -0.10 -1.14 3.31 -89.22 -0.30 -1.43 16 3 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 4 C 0.10 1.16 6.45 -2.41 -0.02 1.14 16 5 N -0.61 -9.24 3.32 -170.42 -0.57 -9.81 16 6 C 0.58 9.87 6.83 -12.33 -0.08 9.78 16 7 O -0.50 -10.90 17.37 5.32 0.09 -10.80 16 8 C -0.14 -1.87 4.58 -104.55 -0.48 -2.35 16 9 C 0.11 1.31 7.34 -38.80 -0.28 1.03 16 10 F -0.10 -1.41 16.91 2.25 0.04 -1.37 16 11 C 0.07 0.57 11.16 -17.51 -0.20 0.38 16 12 N -0.42 -3.64 10.33 -13.18 -0.14 -3.77 16 13 C 0.07 0.53 11.16 -17.51 -0.20 0.33 16 14 C 0.11 1.18 7.34 -38.80 -0.28 0.90 16 15 F -0.11 -1.26 16.92 2.25 0.04 -1.22 16 16 C 0.11 1.91 5.91 -2.41 -0.01 1.89 16 17 C -0.08 -1.16 0.73 -153.11 -0.11 -1.27 16 18 C -0.13 -1.92 7.11 37.16 0.26 -1.66 16 19 C 0.17 3.41 4.95 -4.04 -0.02 3.39 16 20 N -0.73 -18.45 4.79 -59.91 -0.29 -18.74 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 25 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 29 H 0.06 0.55 6.61 -51.93 -0.34 0.20 16 30 H 0.07 0.64 6.98 -51.93 -0.36 0.27 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 33 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 37 H 0.10 2.19 6.93 -51.93 -0.36 1.83 16 38 H 0.05 0.61 6.68 -51.93 -0.35 0.26 16 39 H 0.07 1.23 6.75 -51.93 -0.35 0.88 16 40 H 0.06 0.85 6.89 -51.93 -0.36 0.49 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.09 5.99 -40.82 -0.24 9.84 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -34.61 368.21 -6.86 -41.48 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.63 Total: 4.86 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.67 Total: 3.71 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.26 Total: -60.16 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -6.86 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181648173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.160 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds