Wall clock time and date at job start Wed Apr 1 2020 00:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.39039 * 2 1 4 4 C 1.54388 * 110.33970 * 237.76493 * 2 1 3 5 5 N 1.48146 * 104.61575 * 217.26404 * 4 2 1 6 6 C 1.34776 * 127.83797 * 219.32646 * 5 4 2 7 7 O 1.21553 * 120.00029 * 180.02562 * 6 5 4 8 8 C 1.47851 * 120.00381 * 0.02562 * 6 5 4 9 9 C 1.40125 * 120.95749 * 89.71817 * 8 6 5 10 10 F 1.35097 * 120.52134 * 0.02562 * 9 8 6 11 11 C 1.38431 * 118.95390 * 179.75901 * 9 8 6 12 12 N 1.31769 * 120.93311 * 0.52934 * 11 9 8 13 13 C 1.31766 * 122.13831 * 359.72236 * 12 11 9 14 14 C 1.38429 * 120.93314 * 0.02562 * 13 12 11 15 15 F 1.35101 * 120.51894 * 179.97438 * 14 13 12 16 16 C 1.48142 * 104.32318 * 39.58929 * 5 4 2 17 17 C 1.54285 * 110.33885 * 122.23198 * 2 1 3 18 18 C 1.52997 * 110.34541 * 359.97438 * 17 2 1 19 19 C 1.53003 * 110.34059 * 237.73938 * 17 2 1 20 20 N 1.46504 * 109.46998 * 180.02562 * 19 17 2 21 21 C 1.36939 * 119.99873 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99780 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99680 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00239 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99737 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47135 * 59.99338 * 25 23 21 27 27 H 1.48503 * 109.46933 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46934 * 299.99207 * 25 23 21 29 29 H 1.08998 * 109.47601 * 180.77742 * 1 2 3 30 30 H 1.09002 * 109.47052 * 300.78414 * 1 2 3 31 31 H 1.09011 * 109.46763 * 60.77594 * 1 2 3 32 32 H 1.09001 * 110.40633 * 98.48802 * 4 2 1 33 33 H 1.08997 * 110.51158 * 336.09897 * 4 2 1 34 34 H 1.07999 * 119.52955 * 180.25503 * 11 9 8 35 35 H 1.08007 * 119.53077 * 179.97438 * 13 12 11 36 36 H 1.09002 * 110.40643 * 79.19769 * 16 5 4 37 37 H 1.09004 * 110.41038 * 201.62402 * 16 5 4 38 38 H 1.09000 * 109.47374 * 59.99673 * 18 17 2 39 39 H 1.09003 * 109.47337 * 180.02562 * 18 17 2 40 40 H 1.09000 * 109.46819 * 299.99959 * 18 17 2 41 41 H 1.08996 * 109.46881 * 299.99850 * 19 17 2 42 42 H 1.08992 * 109.47157 * 60.00351 * 19 17 2 43 43 H 0.96997 * 119.99986 * 0.02562 * 20 19 17 44 44 H 0.97003 * 119.99756 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7722 -1.2245 5 7 3.2663 -1.4818 -0.7226 6 6 4.4407 -1.6707 -1.3563 7 8 5.3370 -2.2802 -0.8062 8 6 4.6388 -1.1367 -2.7207 9 6 5.1450 0.1542 -2.9231 10 9 5.4638 0.9389 -1.8706 11 6 5.3186 0.6105 -4.2184 12 7 5.0056 -0.1461 -5.2508 13 6 4.5222 -1.3634 -5.1067 14 6 4.3200 -1.9045 -3.8487 15 9 3.8233 -3.1533 -3.7107 16 6 2.8800 -1.9423 0.6314 17 6 2.0663 -0.7716 1.2237 18 6 0.9061 -1.3030 2.0677 19 6 2.9691 0.1306 2.0674 20 7 3.4676 -0.6203 3.2224 21 6 4.2998 -0.0144 4.1256 22 1 4.5889 1.0167 3.9862 23 6 4.7725 -0.7261 5.2197 24 7 4.4205 -1.9829 5.3892 25 14 5.9071 0.1006 6.4521 26 1 5.2162 1.2686 7.0551 27 1 6.2669 -0.8667 7.5199 28 1 7.1399 0.5570 5.7613 29 1 -0.3634 -1.0275 0.0139 30 1 -0.3633 0.5260 0.8829 31 1 -0.3633 0.5018 -0.8970 32 1 2.3401 -0.0796 -2.0205 33 1 1.3243 -1.4861 -1.5812 34 1 5.7121 1.6024 -4.3851 35 1 4.2794 -1.9469 -5.9826 36 1 2.2638 -2.8390 0.5665 37 1 3.7671 -2.1327 1.2357 38 1 0.2951 -1.9742 1.4641 39 1 1.3004 -1.8446 2.9276 40 1 0.2960 -0.4683 2.4131 41 1 3.8111 0.4688 1.4636 42 1 2.3998 0.9935 2.4129 43 1 3.2082 -1.5465 3.3474 44 1 4.7506 -2.4801 6.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181648173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:59 Heat of formation + Delta-G solvation = -85.403683 kcal Electronic energy + Delta-G solvation = -30591.335016 eV Core-core repulsion = 26179.634333 eV Total energy + Delta-G solvation = -4411.700683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.40789 -50.37678 -41.86492 -40.97110 -39.60778 -36.59379 -34.94335 -33.75392 -33.22721 -31.99265 -31.25440 -28.56803 -27.75509 -26.81164 -25.87387 -25.05820 -24.81516 -22.62898 -21.35618 -19.83953 -19.58897 -19.42558 -19.31645 -18.56977 -17.87045 -17.27331 -17.21640 -16.83952 -16.72119 -16.69770 -16.54970 -16.07420 -15.40820 -15.34712 -15.23600 -14.95304 -14.88338 -14.60873 -14.51805 -14.40905 -14.01552 -13.43447 -13.36027 -13.18408 -12.99297 -12.91912 -12.70641 -12.66708 -12.37948 -12.15002 -12.00328 -11.84041 -11.73306 -11.36887 -11.24855 -11.18875 -11.00959 -10.98004 -10.20784 -10.03963 -9.03263 -7.98937 -5.27221 -0.74464 -0.55523 0.99882 1.41430 1.45542 1.50642 1.51358 2.09877 2.31044 2.51889 2.70238 2.85570 3.13270 3.33256 3.38806 3.43234 3.47816 3.66487 3.70418 4.06769 4.11398 4.17016 4.19692 4.25727 4.32057 4.39688 4.55236 4.56543 4.60837 4.72068 4.73999 4.83946 4.93131 4.96536 5.07036 5.13236 5.18648 5.25010 5.35961 5.40635 5.43597 5.62451 6.18059 6.23263 6.33820 6.62803 7.29911 8.05274 8.29371 9.24329 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.003565 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.098191 B = 7851.978240 C = 8686.115316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.080 0.920 4 C 0.103 3.897 5 N -0.605 5.605 6 C 0.571 3.429 7 O -0.571 6.571 8 C -0.160 4.160 9 C 0.095 3.905 10 F -0.125 7.125 11 C 0.092 3.908 12 N -0.420 5.420 13 C 0.094 3.906 14 C 0.104 3.896 15 F -0.118 7.118 16 C 0.114 3.886 17 C -0.067 4.067 18 C -0.126 4.126 19 C 0.169 3.831 20 N -0.738 5.738 21 C -0.250 4.250 22 H 0.069 0.931 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.072 0.928 41 H -0.006 1.006 42 H 0.028 0.972 43 H 0.376 0.624 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 4.749 -26.256 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.018 4.018 5 N -0.336 5.336 6 C 0.359 3.641 7 O -0.451 6.451 8 C -0.172 4.172 9 C 0.072 3.928 10 F -0.103 7.103 11 C -0.066 4.066 12 N -0.127 5.127 13 C -0.064 4.064 14 C 0.082 3.918 15 F -0.096 7.096 16 C -0.009 4.009 17 C -0.068 4.068 18 C -0.183 4.183 19 C 0.043 3.957 20 N -0.382 5.382 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.198 1.198 27 H -0.218 1.218 28 H -0.211 1.211 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.233 0.767 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.012 0.988 42 H 0.046 0.954 43 H 0.210 0.790 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.955 4.865 -26.728 28.605 hybrid contribution 1.077 -0.699 2.694 2.984 sum -7.878 4.166 -24.034 25.633 Atomic orbital electron populations 1.21875 0.90909 1.03393 1.03112 1.22124 0.98501 0.98837 0.91279 0.90163 1.22887 0.85469 0.96174 0.97294 1.48963 1.12918 1.54162 1.17549 1.17812 0.81363 0.79774 0.85195 1.90864 1.42823 1.43577 1.67811 1.20533 1.06573 0.96157 0.93980 1.18941 0.99935 0.87186 0.86713 1.91611 1.89853 1.72653 1.56175 1.23504 0.97041 1.02375 0.83635 1.67838 1.08092 1.04570 1.32180 1.23593 0.95391 0.92300 0.95115 1.18789 0.98545 0.81040 0.93456 1.91591 1.84324 1.37153 1.96538 1.22547 0.98814 0.97745 0.81770 1.21623 0.95341 0.94366 0.95507 1.21824 0.96182 1.01596 0.98705 1.20763 0.93723 0.93778 0.87450 1.42549 1.57068 1.12823 1.25768 1.19554 1.20560 0.95913 1.02162 0.91263 1.25538 1.03015 0.96773 1.01109 1.69801 1.50470 1.09807 1.31647 0.85240 0.78801 0.77415 0.78483 1.19829 1.21782 1.21069 0.90869 0.91741 0.90366 0.89239 0.87545 0.76673 0.76118 0.88996 0.93558 0.89499 0.94877 0.90922 0.98808 0.95428 0.79033 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.93 71.98 0.57 -1.38 16 2 C -0.09 -1.89 3.31 -9.89 -0.03 -1.92 16 3 H 0.08 1.82 7.71 -2.39 -0.02 1.80 16 4 C 0.10 2.08 6.45 86.53 0.56 2.64 16 5 N -0.61 -18.89 3.32 -811.35 -2.69 -21.58 16 6 C 0.57 20.42 6.83 86.79 0.59 21.02 16 7 O -0.57 -26.90 17.37 -3.88 -0.07 -26.97 16 8 C -0.16 -4.13 4.58 -19.82 -0.09 -4.22 16 9 C 0.09 2.10 7.34 22.77 0.17 2.26 16 10 F -0.12 -3.45 16.91 44.97 0.76 -2.69 16 11 C 0.09 1.31 11.16 84.75 0.95 2.26 16 12 N -0.42 -5.69 10.33 -195.62 -2.02 -7.71 16 13 C 0.09 1.16 11.16 84.75 0.95 2.11 16 14 C 0.10 2.03 7.34 22.77 0.17 2.20 16 15 F -0.12 -2.55 16.92 44.97 0.76 -1.79 16 16 C 0.11 3.99 5.91 86.53 0.51 4.50 16 17 C -0.07 -2.09 0.73 -51.27 -0.04 -2.12 16 18 C -0.13 -3.53 7.11 71.98 0.51 -3.02 16 19 C 0.17 7.16 4.95 86.38 0.43 7.59 16 20 N -0.74 -39.45 4.79 -343.45 -1.64 -41.10 16 21 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 22 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 23 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 24 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 25 Si 0.97 48.44 29.55 68.60 2.03 50.47 16 26 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 29 H 0.07 0.93 6.61 -2.39 -0.02 0.91 16 30 H 0.06 1.00 6.98 -2.39 -0.02 0.98 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.51 7.45 -2.39 -0.02 1.49 16 33 H 0.11 1.60 7.87 -2.39 -0.02 1.58 16 34 H 0.22 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.22 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.09 2.81 7.83 -2.39 -0.02 2.79 16 37 H 0.05 2.16 6.93 -2.39 -0.02 2.15 16 38 H 0.09 1.82 6.68 -2.39 -0.02 1.81 16 39 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 40 H 0.07 1.88 6.89 -2.39 -0.02 1.86 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.38 21.10 5.99 -92.71 -0.55 20.55 16 44 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -82.36 368.21 4.45 -77.91 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.50 Total: 20.67 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.54 Total: 14.04 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.07 Total: -131.65 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.07 Total: -26.97 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.52 Total: -4.48 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -82.36 4.45 -77.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181648173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.492 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds