Wall clock time and date at job start Wed Apr 1 2020 00:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.30634 * 2 1 4 4 C 1.54390 * 110.43033 * 237.76955 * 2 1 3 5 5 N 1.48152 * 104.61461 * 264.95071 * 4 2 1 6 6 C 1.34780 * 127.83713 * 140.43724 * 5 4 2 7 7 O 1.21540 * 120.00038 * 354.49851 * 6 5 4 8 8 C 1.47885 * 119.99541 * 174.50373 * 6 5 4 9 9 N 1.32842 * 119.72654 * 4.87508 * 8 6 5 10 10 C 1.31364 * 121.68939 * 180.02562 * 9 8 6 11 11 C 1.39000 * 120.93691 * 0.02607 * 10 9 8 12 12 F 1.35093 * 120.33117 * 179.97438 * 11 10 9 13 13 C 1.38721 * 119.33876 * 359.97438 * 11 10 9 14 14 C 1.38842 * 118.44808 * 359.73038 * 13 11 10 15 15 F 1.35100 * 120.48258 * 180.28608 * 14 13 11 16 16 C 1.48152 * 104.32366 * 320.41729 * 5 4 2 17 17 C 1.54285 * 110.34270 * 122.17799 * 2 1 3 18 18 C 1.52998 * 110.34015 * 359.97438 * 17 2 1 19 19 C 1.52998 * 110.34275 * 237.84881 * 17 2 1 20 20 N 1.46498 * 109.46873 * 180.02562 * 19 17 2 21 21 C 1.36945 * 119.99749 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99630 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99750 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00449 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99773 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47276 * 60.00034 * 25 23 21 27 27 H 1.48500 * 109.47260 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47191 * 299.99704 * 25 23 21 29 29 H 1.08996 * 109.47181 * 297.83156 * 1 2 3 30 30 H 1.09007 * 109.47044 * 57.82328 * 1 2 3 31 31 H 1.08991 * 109.47551 * 177.81728 * 1 2 3 32 32 H 1.09000 * 110.41049 * 23.73114 * 4 2 1 33 33 H 1.09001 * 110.40737 * 146.05319 * 4 2 1 34 34 H 1.07997 * 119.52926 * 180.02562 * 10 9 8 35 35 H 1.07999 * 120.77727 * 179.97438 * 13 11 10 36 36 H 1.09005 * 110.40470 * 280.80081 * 16 5 4 37 37 H 1.08995 * 110.40647 * 158.36976 * 16 5 4 38 38 H 1.09002 * 109.47471 * 298.52640 * 18 17 2 39 39 H 1.09000 * 109.47539 * 58.52232 * 18 17 2 40 40 H 1.09000 * 109.47206 * 178.52918 * 18 17 2 41 41 H 1.09006 * 109.46835 * 299.99597 * 19 17 2 42 42 H 1.08997 * 109.47645 * 59.99485 * 19 17 2 43 43 H 0.96992 * 120.00586 * 359.97438 * 20 19 17 44 44 H 0.97000 * 120.00818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2239 5 7 2.3177 -2.1429 -0.7213 6 6 2.0837 -3.3102 -1.3533 7 8 1.5213 -3.3158 -2.4307 8 6 2.5113 -4.5840 -0.7356 9 7 3.0373 -4.5806 0.4842 10 6 3.4305 -5.6892 1.0692 11 6 3.3103 -6.9168 0.4284 12 9 3.7191 -8.0492 1.0413 13 6 2.7665 -6.9675 -0.8467 14 6 2.3540 -5.7807 -1.4375 15 9 1.8133 -5.7832 -2.6756 16 6 2.8823 -1.9401 0.6333 17 6 2.0664 -0.7704 1.2244 18 6 0.9061 -1.3010 2.0689 19 6 2.9670 0.1333 2.0687 20 7 3.4656 -0.6165 3.2243 21 6 4.2960 -0.0091 4.1281 22 1 4.5837 1.0225 3.9887 23 6 4.7680 -0.7194 5.2233 24 7 4.4170 -1.9764 5.3935 25 14 5.9014 0.1088 6.4558 26 1 5.2096 1.2772 7.0570 27 1 6.2605 -0.8571 7.5250 28 1 7.1345 0.5649 5.7656 29 1 -0.3633 0.4798 0.9087 30 1 -0.3633 0.5473 -0.8699 31 1 -0.3634 -1.0268 -0.0391 32 1 1.3253 -0.7879 -2.0206 33 1 2.9958 -0.3212 -1.5792 34 1 3.8531 -5.6461 2.0622 35 1 2.6626 -7.9087 -1.3662 36 1 3.9373 -1.6734 0.5692 37 1 2.7523 -2.8378 1.2375 38 1 0.3110 -0.4645 2.4353 39 1 0.2804 -1.9521 1.4585 40 1 1.3003 -1.8644 2.9147 41 1 3.8091 0.4727 1.4655 42 1 2.3962 0.9956 2.4133 43 1 3.2070 -1.5428 3.3497 44 1 4.7465 -2.4727 6.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181919500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:54 Heat of formation + Delta-G solvation = -56.866377 kcal Electronic energy + Delta-G solvation = -30397.353906 eV Core-core repulsion = 25986.890693 eV Total energy + Delta-G solvation = -4410.463212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.47405 -49.28503 -40.85208 -39.70075 -38.11833 -34.74054 -33.42112 -32.63719 -31.61451 -31.10201 -29.55971 -27.52105 -25.74946 -25.53341 -24.76973 -23.95957 -23.09564 -21.25923 -20.14110 -18.69205 -18.46679 -18.40887 -17.40280 -17.02143 -16.66764 -16.20246 -15.98268 -15.88448 -15.62938 -14.96927 -14.61350 -14.57852 -14.28997 -14.08274 -14.03633 -13.56485 -13.43853 -13.22989 -13.05421 -13.00594 -12.77252 -12.49829 -12.11427 -11.93987 -11.46045 -11.34817 -11.17668 -10.98657 -10.80604 -10.58815 -10.32366 -10.28397 -10.24937 -10.15177 -9.98667 -9.59683 -9.53270 -9.31450 -8.86384 -8.55809 -6.90609 -5.76489 -3.04035 0.01033 0.47012 2.41192 2.75238 3.29972 3.34387 3.43887 3.48839 3.49139 3.61929 3.79353 4.13688 4.24007 4.56913 4.60912 4.73808 4.79304 5.00002 5.02764 5.17813 5.38917 5.41977 5.48944 5.55865 5.60281 5.68452 5.69910 5.90367 5.96638 5.99760 6.06670 6.08250 6.15518 6.28032 6.29702 6.40139 6.56579 6.61588 6.71971 6.82303 6.90673 7.14758 7.55566 7.70295 8.03978 8.42908 9.54628 10.12288 10.47625 11.46284 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.004105 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.065627 B = 6818.497013 C = 9193.556366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.109 3.891 5 N -0.596 5.596 6 C 0.588 3.412 7 O -0.532 6.532 8 C 0.041 3.959 9 N -0.386 5.386 10 C 0.073 3.927 11 C 0.104 3.896 12 F -0.115 7.115 13 C -0.159 4.159 14 C 0.138 3.862 15 F -0.098 7.098 16 C 0.103 3.897 17 C -0.077 4.077 18 C -0.130 4.130 19 C 0.168 3.832 20 N -0.729 5.729 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -7.312 -13.144 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.375 3.625 7 O -0.409 6.409 8 C -0.098 4.098 9 N -0.096 5.096 10 C -0.089 4.089 11 C 0.082 3.918 12 F -0.093 7.093 13 C -0.186 4.186 14 C 0.115 3.885 15 F -0.076 7.076 16 C -0.019 4.019 17 C -0.078 4.078 18 C -0.188 4.188 19 C 0.040 3.960 20 N -0.374 5.374 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.207 4.207 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.207 0.793 35 H 0.184 0.816 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.220 0.780 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.667 -6.506 -13.310 15.862 hybrid contribution 0.626 -0.931 0.370 1.181 sum -5.041 -7.437 -12.940 15.753 Atomic orbital electron populations 1.21895 0.94570 1.01854 1.01471 1.22157 0.96291 0.99489 0.93864 0.89359 1.22485 1.00938 0.80699 0.97160 1.48754 1.60807 1.04637 1.18546 1.17019 0.79673 0.81647 0.84164 1.90843 1.42673 1.86221 1.21196 1.21500 1.02421 0.93550 0.92346 1.68055 1.05950 1.28513 1.07068 1.23401 0.98244 0.85416 1.01880 1.18814 0.97598 0.84054 0.91379 1.91592 1.87353 1.48322 1.82046 1.21647 1.01962 0.99591 0.95409 1.18268 0.95425 0.92861 0.81981 1.91650 1.81986 1.96929 1.37067 1.23103 0.97054 1.00540 0.81188 1.21744 0.96250 0.95339 0.94479 1.21845 0.96831 1.00701 0.99373 1.20707 0.93646 0.92975 0.88644 1.42371 1.57337 1.12889 1.24787 1.19173 1.20378 0.95681 1.01683 0.91373 1.24674 1.01105 0.96089 0.98867 1.69629 1.49104 1.08428 1.31002 0.86314 0.80796 0.78210 0.81128 1.21383 1.21764 1.21369 0.91902 0.93191 0.92507 0.89961 0.90820 0.79281 0.81565 0.90521 0.86236 0.92508 0.93579 0.91474 0.96225 0.96038 0.77992 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.93 37.16 0.29 -1.34 16 2 C -0.10 -1.25 3.30 -89.22 -0.29 -1.54 16 3 H 0.09 1.04 7.71 -51.93 -0.40 0.64 16 4 C 0.11 1.41 6.62 -2.40 -0.02 1.40 16 5 N -0.60 -8.82 3.32 -170.39 -0.57 -9.38 16 6 C 0.59 9.28 7.88 -12.31 -0.10 9.18 16 7 O -0.53 -9.48 15.57 5.33 0.08 -9.40 16 8 C 0.04 0.57 6.73 -82.96 -0.56 0.01 16 9 N -0.39 -5.21 6.66 -9.70 -0.06 -5.27 16 10 C 0.07 0.81 11.17 -17.47 -0.20 0.61 16 11 C 0.10 1.01 7.35 -39.12 -0.29 0.73 16 12 F -0.11 -1.10 17.28 2.25 0.04 -1.07 16 13 C -0.16 -1.48 10.14 -39.18 -0.40 -1.88 16 14 C 0.14 1.67 7.31 -38.84 -0.28 1.39 16 15 F -0.10 -1.32 15.56 2.25 0.04 -1.29 16 16 C 0.10 1.61 5.10 -2.41 -0.01 1.59 16 17 C -0.08 -1.18 0.73 -153.11 -0.11 -1.29 16 18 C -0.13 -2.02 7.07 37.16 0.26 -1.75 16 19 C 0.17 3.15 4.87 -4.04 -0.02 3.13 16 20 N -0.73 -17.17 5.13 -59.91 -0.31 -17.48 16 21 C -0.24 -6.36 9.99 -15.06 -0.15 -6.51 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 25 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.06 0.72 6.84 -51.93 -0.36 0.37 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.72 6.76 -51.93 -0.35 0.37 16 32 H 0.08 1.05 7.57 -51.93 -0.39 0.66 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 37 H 0.12 1.97 5.05 -51.93 -0.26 1.70 16 38 H 0.06 0.85 6.89 -51.93 -0.36 0.49 16 39 H 0.05 0.67 6.71 -51.93 -0.35 0.32 16 40 H 0.07 1.20 6.78 -51.93 -0.35 0.84 16 41 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.39 9.45 6.19 -40.82 -0.25 9.20 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -30.61 362.25 -7.14 -37.75 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.56 Total: 6.67 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.96 Total: 3.32 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.21 Total: -58.20 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.07 Total: -2.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.61 -7.14 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181919500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.113 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds