Wall clock time and date at job start Wed Apr 1 2020 00:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.30634 * 2 1 4 4 C 1.54390 * 110.43033 * 237.76955 * 2 1 3 5 5 N 1.48152 * 104.61461 * 264.95071 * 4 2 1 6 6 C 1.34780 * 127.83713 * 140.43724 * 5 4 2 7 7 O 1.21540 * 120.00038 * 354.49851 * 6 5 4 8 8 C 1.47885 * 119.99541 * 174.50373 * 6 5 4 9 9 N 1.32842 * 119.72654 * 4.87508 * 8 6 5 10 10 C 1.31364 * 121.68939 * 180.02562 * 9 8 6 11 11 C 1.39000 * 120.93691 * 0.02607 * 10 9 8 12 12 F 1.35093 * 120.33117 * 179.97438 * 11 10 9 13 13 C 1.38721 * 119.33876 * 359.97438 * 11 10 9 14 14 C 1.38842 * 118.44808 * 359.73038 * 13 11 10 15 15 F 1.35100 * 120.48258 * 180.28608 * 14 13 11 16 16 C 1.48152 * 104.32366 * 320.41729 * 5 4 2 17 17 C 1.54285 * 110.34270 * 122.17799 * 2 1 3 18 18 C 1.52998 * 110.34015 * 359.97438 * 17 2 1 19 19 C 1.52998 * 110.34275 * 237.84881 * 17 2 1 20 20 N 1.46498 * 109.46873 * 180.02562 * 19 17 2 21 21 C 1.36945 * 119.99749 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99630 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99750 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00449 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99773 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47276 * 60.00034 * 25 23 21 27 27 H 1.48500 * 109.47260 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47191 * 299.99704 * 25 23 21 29 29 H 1.08996 * 109.47181 * 297.83156 * 1 2 3 30 30 H 1.09007 * 109.47044 * 57.82328 * 1 2 3 31 31 H 1.08991 * 109.47551 * 177.81728 * 1 2 3 32 32 H 1.09000 * 110.41049 * 23.73114 * 4 2 1 33 33 H 1.09001 * 110.40737 * 146.05319 * 4 2 1 34 34 H 1.07997 * 119.52926 * 180.02562 * 10 9 8 35 35 H 1.07999 * 120.77727 * 179.97438 * 13 11 10 36 36 H 1.09005 * 110.40470 * 280.80081 * 16 5 4 37 37 H 1.08995 * 110.40647 * 158.36976 * 16 5 4 38 38 H 1.09002 * 109.47471 * 298.52640 * 18 17 2 39 39 H 1.09000 * 109.47539 * 58.52232 * 18 17 2 40 40 H 1.09000 * 109.47206 * 178.52918 * 18 17 2 41 41 H 1.09006 * 109.46835 * 299.99597 * 19 17 2 42 42 H 1.08997 * 109.47645 * 59.99485 * 19 17 2 43 43 H 0.96992 * 120.00586 * 359.97438 * 20 19 17 44 44 H 0.97000 * 120.00818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2239 5 7 2.3177 -2.1429 -0.7213 6 6 2.0837 -3.3102 -1.3533 7 8 1.5213 -3.3158 -2.4307 8 6 2.5113 -4.5840 -0.7356 9 7 3.0373 -4.5806 0.4842 10 6 3.4305 -5.6892 1.0692 11 6 3.3103 -6.9168 0.4284 12 9 3.7191 -8.0492 1.0413 13 6 2.7665 -6.9675 -0.8467 14 6 2.3540 -5.7807 -1.4375 15 9 1.8133 -5.7832 -2.6756 16 6 2.8823 -1.9401 0.6333 17 6 2.0664 -0.7704 1.2244 18 6 0.9061 -1.3010 2.0689 19 6 2.9670 0.1333 2.0687 20 7 3.4656 -0.6165 3.2243 21 6 4.2960 -0.0091 4.1281 22 1 4.5837 1.0225 3.9887 23 6 4.7680 -0.7194 5.2233 24 7 4.4170 -1.9764 5.3935 25 14 5.9014 0.1088 6.4558 26 1 5.2096 1.2772 7.0570 27 1 6.2605 -0.8571 7.5250 28 1 7.1345 0.5649 5.7656 29 1 -0.3633 0.4798 0.9087 30 1 -0.3633 0.5473 -0.8699 31 1 -0.3634 -1.0268 -0.0391 32 1 1.3253 -0.7879 -2.0206 33 1 2.9958 -0.3212 -1.5792 34 1 3.8531 -5.6461 2.0622 35 1 2.6626 -7.9087 -1.3662 36 1 3.9373 -1.6734 0.5692 37 1 2.7523 -2.8378 1.2375 38 1 0.3110 -0.4645 2.4353 39 1 0.2804 -1.9521 1.4585 40 1 1.3003 -1.8644 2.9147 41 1 3.8091 0.4727 1.4655 42 1 2.3962 0.9956 2.4133 43 1 3.2070 -1.5428 3.3497 44 1 4.7465 -2.4727 6.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181919500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:54 Heat of formation + Delta-G solvation = -74.556601 kcal Electronic energy + Delta-G solvation = -30398.121011 eV Core-core repulsion = 25986.890693 eV Total energy + Delta-G solvation = -4411.230318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.29891 -50.26301 -41.93075 -40.77936 -39.35544 -36.40555 -34.69015 -33.72527 -33.07008 -32.15044 -31.10517 -28.70334 -27.22313 -26.74123 -25.87860 -25.05539 -24.61491 -22.52952 -21.27032 -19.92273 -19.52239 -19.38719 -18.87881 -18.37219 -17.64326 -17.12231 -17.11562 -17.08722 -16.60909 -16.39607 -15.90335 -15.68194 -15.51589 -15.36198 -15.31315 -14.79237 -14.69030 -14.52966 -14.39628 -14.19324 -13.87660 -13.71386 -13.36930 -13.14171 -12.98386 -12.77205 -12.57307 -12.48574 -12.37822 -12.07757 -11.93243 -11.64338 -11.45797 -11.29175 -11.20761 -11.12903 -10.86442 -10.62543 -10.28795 -9.74355 -8.87182 -7.85475 -5.11918 -0.93881 -0.38876 1.34514 1.52940 1.54131 1.59919 1.67009 2.31033 2.39381 2.62690 2.70547 2.79215 3.23022 3.35788 3.47296 3.55452 3.63053 3.74737 3.87696 4.12767 4.23038 4.29221 4.29930 4.36341 4.39577 4.56612 4.60712 4.68939 4.79290 4.85494 4.88365 4.98413 5.02863 5.09753 5.10769 5.18620 5.25626 5.32203 5.45411 5.46606 5.58747 5.62907 6.20427 6.35292 6.37010 6.86343 7.44787 8.21031 8.45828 9.37481 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.004105 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.065627 B = 6818.497013 C = 9193.556366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.104 0.896 4 C 0.106 3.894 5 N -0.595 5.595 6 C 0.583 3.417 7 O -0.559 6.559 8 C 0.019 3.981 9 N -0.408 5.408 10 C 0.069 3.931 11 C 0.120 3.880 12 F -0.108 7.108 13 C -0.137 4.137 14 C 0.132 3.868 15 F -0.107 7.107 16 C 0.112 3.888 17 C -0.070 4.070 18 C -0.120 4.120 19 C 0.169 3.831 20 N -0.738 5.738 21 C -0.242 4.242 22 H 0.072 0.928 23 C -0.068 4.068 24 N -0.963 5.963 25 Si 0.964 3.036 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.281 1.281 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.198 0.802 35 H 0.202 0.798 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.378 0.622 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -7.285 -13.726 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.122 0.878 4 C -0.015 4.015 5 N -0.326 5.326 6 C 0.371 3.629 7 O -0.438 6.438 8 C -0.119 4.119 9 N -0.118 5.118 10 C -0.093 4.093 11 C 0.097 3.903 12 F -0.086 7.086 13 C -0.163 4.163 14 C 0.109 3.891 15 F -0.085 7.085 16 C -0.010 4.010 17 C -0.072 4.072 18 C -0.178 4.178 19 C 0.043 3.957 20 N -0.381 5.381 21 C -0.374 4.374 22 H 0.090 0.910 23 C -0.260 4.260 24 N -0.614 5.614 25 Si 0.794 3.206 26 H -0.208 1.208 27 H -0.224 1.224 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.215 0.785 35 H 0.219 0.781 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.043 0.957 43 H 0.212 0.788 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.755 -6.436 -13.916 16.376 hybrid contribution 0.663 -0.969 0.539 1.292 sum -5.092 -7.404 -13.377 16.115 Atomic orbital electron populations 1.21854 0.93484 1.01453 1.02560 1.22140 0.97109 0.99722 0.91964 0.87792 1.22644 1.01723 0.79842 0.97329 1.48784 1.60366 1.05293 1.18136 1.17341 0.79229 0.82392 0.83920 1.90812 1.44026 1.86727 1.22266 1.21327 1.04091 0.93468 0.93010 1.67964 1.06840 1.29776 1.07215 1.23577 0.97926 0.85602 1.02218 1.18661 0.96721 0.83604 0.91284 1.91618 1.87155 1.47897 1.81973 1.21878 0.99770 0.99859 0.94804 1.18359 0.95805 0.93235 0.81701 1.91626 1.82267 1.96986 1.37660 1.22880 0.96213 1.00297 0.81651 1.21624 0.95527 0.95020 0.94990 1.21739 0.96869 1.00684 0.98478 1.20823 0.94139 0.93218 0.87563 1.42524 1.57045 1.12867 1.25684 1.19549 1.19983 0.95876 1.01970 0.91000 1.25375 1.03070 0.96768 1.00823 1.69772 1.50528 1.09615 1.31439 0.85362 0.79209 0.77175 0.78881 1.20837 1.22358 1.20770 0.91600 0.91261 0.93703 0.89557 0.89657 0.78532 0.78090 0.92058 0.87112 0.91859 0.92676 0.94246 0.95953 0.95738 0.78842 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.93 71.98 0.57 -2.33 16 2 C -0.09 -2.12 3.30 -9.89 -0.03 -2.16 16 3 H 0.10 2.18 7.71 -2.38 -0.02 2.17 16 4 C 0.11 2.62 6.62 86.53 0.57 3.19 16 5 N -0.60 -17.55 3.32 -811.28 -2.69 -20.24 16 6 C 0.58 18.54 7.88 86.80 0.68 19.22 16 7 O -0.56 -20.04 15.57 -3.84 -0.06 -20.10 16 8 C 0.02 0.53 6.73 41.88 0.28 0.81 16 9 N -0.41 -11.12 6.66 -184.61 -1.23 -12.35 16 10 C 0.07 1.51 11.17 84.95 0.95 2.46 16 11 C 0.12 2.12 7.35 22.57 0.17 2.29 16 12 F -0.11 -1.83 17.28 44.97 0.78 -1.06 16 13 C -0.14 -2.25 10.14 22.53 0.23 -2.02 16 14 C 0.13 3.10 7.31 22.75 0.17 3.27 16 15 F -0.11 -2.82 15.56 44.97 0.70 -2.12 16 16 C 0.11 3.53 5.10 86.53 0.44 3.97 16 17 C -0.07 -2.11 0.73 -51.28 -0.04 -2.15 16 18 C -0.12 -3.71 7.07 71.98 0.51 -3.20 16 19 C 0.17 6.25 4.87 86.38 0.42 6.67 16 20 N -0.74 -34.96 5.13 -343.45 -1.76 -36.72 16 21 C -0.24 -12.90 9.99 84.03 0.84 -12.06 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.96 -56.02 13.06 21.65 0.28 -55.73 16 25 Si 0.96 44.75 29.55 68.60 2.03 46.78 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H 0.07 1.37 6.84 -2.39 -0.02 1.35 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.04 1.07 6.76 -2.39 -0.02 1.05 16 32 H 0.09 2.10 7.57 -2.39 -0.02 2.08 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.06 2.11 7.83 -2.38 -0.02 2.09 16 37 H 0.11 3.75 5.05 -2.39 -0.01 3.74 16 38 H 0.06 1.84 6.89 -2.39 -0.02 1.82 16 39 H 0.05 1.58 6.71 -2.39 -0.02 1.56 16 40 H 0.04 1.43 6.78 -2.39 -0.02 1.41 16 41 H 0.02 0.83 8.10 -2.38 -0.02 0.81 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.38 18.96 6.19 -92.71 -0.57 18.39 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -65.56 362.25 4.75 -60.81 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.48 Total: 26.02 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.23 Total: 14.71 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -5.40 Total: -125.04 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.48 Total: -3.18 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.56 4.75 -60.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181919500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.749 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds