Wall clock time and date at job start Wed Apr 1 2020 00:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49801 * 2 1 4 4 C 1.53191 * 109.49617 * 239.93294 * 2 1 3 5 5 N 1.46924 * 108.77693 * 294.68430 * 4 2 1 6 6 C 1.34773 * 120.63180 * 126.37172 * 5 4 2 7 7 O 1.21553 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.47849 * 120.00070 * 179.72239 * 6 5 4 9 9 C 1.40128 * 120.95677 * 89.99798 * 8 6 5 10 10 F 1.35095 * 120.52135 * 359.97438 * 9 8 6 11 11 C 1.38432 * 118.95304 * 179.73391 * 9 8 6 12 12 N 1.31761 * 120.93269 * 0.54643 * 11 9 8 13 13 C 1.31764 * 122.14352 * 359.72450 * 12 11 9 14 14 C 1.38436 * 120.92870 * 359.97438 * 13 12 11 15 15 F 1.35100 * 120.51852 * 179.97438 * 14 13 12 16 16 C 1.46931 * 118.73749 * 306.64210 * 5 4 2 17 17 C 1.52760 * 109.00671 * 53.31207 * 16 5 4 18 18 C 1.53045 * 109.38342 * 305.58369 * 17 16 5 19 19 H 1.08998 * 109.45034 * 301.23094 * 18 17 16 20 20 C 1.52998 * 109.46022 * 181.25935 * 18 17 16 21 21 N 1.46502 * 109.46753 * 64.93304 * 20 18 17 22 22 C 1.36940 * 119.99966 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99768 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00074 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00069 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00171 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47330 * 89.99692 * 26 24 22 28 28 H 1.48499 * 109.47515 * 209.99608 * 26 24 22 29 29 H 1.48510 * 109.47093 * 329.99854 * 26 24 22 30 30 H 1.08999 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46795 * 300.06239 * 1 2 3 32 32 H 1.08999 * 109.46876 * 60.06564 * 1 2 3 33 33 H 1.09004 * 109.58065 * 174.89622 * 4 2 1 34 34 H 1.08995 * 109.70332 * 54.54485 * 4 2 1 35 35 H 1.08001 * 119.52847 * 180.27424 * 11 9 8 36 36 H 1.08007 * 119.53872 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.58455 * 173.14501 * 16 5 4 38 38 H 1.09002 * 109.58874 * 293.57059 * 16 5 4 39 39 H 1.09005 * 109.56000 * 185.55132 * 17 16 5 40 40 H 1.08999 * 109.36315 * 65.49444 * 17 16 5 41 41 H 1.09001 * 109.47175 * 184.93375 * 20 18 17 42 42 H 1.08997 * 109.47566 * 304.93850 * 20 18 17 43 43 H 0.96998 * 120.00067 * 0.02562 * 21 20 18 44 44 H 0.96995 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 1.6515 -2.1379 -1.1701 6 6 0.9740 -2.7213 -2.1786 7 8 0.6793 -2.0764 -3.1659 8 6 0.5941 -4.1471 -2.0864 9 6 -0.6299 -4.5320 -1.5231 10 9 -1.4899 -3.6035 -1.0507 11 6 -0.9459 -5.8784 -1.4628 12 7 -0.1105 -6.7912 -1.9156 13 6 1.0526 -6.4746 -2.4478 14 6 1.4498 -5.1528 -2.5551 15 9 2.6444 -4.8377 -3.1017 16 6 2.0091 -2.9026 0.0325 17 6 1.5030 -2.1561 1.2654 18 6 2.0409 -0.7234 1.2482 19 1 3.1306 -0.7450 1.2350 20 6 1.5607 0.0164 2.4984 21 7 2.1467 -0.6050 3.6887 22 6 1.8586 -0.1090 4.9322 23 1 1.1990 0.7399 5.0354 24 6 2.4134 -0.6981 6.0600 25 7 2.1361 -0.2217 7.2552 26 14 3.5537 -2.1668 5.8815 27 1 4.9543 -1.6925 5.7448 28 1 3.4391 -3.0315 7.0834 29 1 3.1744 -2.9442 4.6744 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6459 -1.2981 34 1 1.6028 -0.2732 -2.1403 35 1 -1.8887 -6.1852 -1.0346 36 1 1.7049 -7.2573 -2.8062 37 1 1.5473 -3.8890 -0.0110 38 1 3.0926 -3.0064 0.0908 39 1 1.8481 -2.6635 2.1664 40 1 0.4133 -2.1358 1.2535 41 1 1.8696 1.0603 2.4440 42 1 0.4737 -0.0383 2.5580 43 1 2.7394 -1.3672 3.5959 44 1 2.5241 -0.6331 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184486827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:32 Heat of formation + Delta-G solvation = -68.936811 kcal Electronic energy + Delta-G solvation = -30545.941931 eV Core-core repulsion = 26134.955305 eV Total energy + Delta-G solvation = -4410.986626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.68298 -49.62268 -41.09216 -40.10853 -38.33072 -35.27335 -33.88480 -32.85322 -31.91080 -31.36628 -30.79859 -27.46509 -27.37555 -25.31789 -24.17502 -23.62930 -23.15791 -21.57509 -20.71431 -18.95900 -18.75530 -18.61907 -18.20970 -17.46182 -17.06348 -16.50319 -16.40680 -15.95862 -15.93434 -15.50557 -15.08588 -14.69887 -14.46256 -14.29764 -14.24776 -14.08040 -13.83898 -13.76045 -13.62002 -13.11694 -12.85056 -12.71865 -12.52805 -12.43081 -11.75465 -11.60241 -11.46076 -11.15336 -10.98150 -10.85448 -10.57534 -10.46642 -10.40250 -10.25848 -10.15421 -10.02480 -9.61851 -9.58309 -8.92905 -8.91848 -7.26012 -5.80116 -3.15612 -0.00964 0.06411 1.95613 2.45349 2.73866 2.97774 3.30753 3.34245 3.37042 3.40903 3.62608 3.72109 4.03507 4.31255 4.52633 4.54706 4.66402 4.76415 4.80935 4.84159 4.88866 5.03311 5.10192 5.19799 5.33380 5.47964 5.54514 5.57724 5.62307 5.64526 5.74270 5.78508 5.85442 5.99390 6.08381 6.19890 6.23227 6.24460 6.42538 6.63979 6.76673 6.93737 6.96004 7.61027 7.96387 8.38949 9.17920 9.90095 10.09832 11.38513 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.003422 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.149157 B = 8181.563829 C = 8916.352920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.116 3.884 5 N -0.588 5.588 6 C 0.566 3.434 7 O -0.518 6.518 8 C -0.148 4.148 9 C 0.113 3.887 10 F -0.107 7.107 11 C 0.071 3.929 12 N -0.418 5.418 13 C 0.069 3.931 14 C 0.109 3.891 15 F -0.110 7.110 16 C 0.104 3.896 17 C -0.130 4.130 18 C -0.093 4.093 19 H 0.073 0.927 20 C 0.163 3.837 21 N -0.756 5.756 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 -11.354 -22.251 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.005 4.005 5 N -0.320 5.320 6 C 0.351 3.649 7 O -0.394 6.394 8 C -0.161 4.161 9 C 0.090 3.910 10 F -0.085 7.085 11 C -0.088 4.088 12 N -0.125 5.125 13 C -0.090 4.090 14 C 0.087 3.913 15 F -0.088 7.088 16 C -0.018 4.018 17 C -0.168 4.168 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.202 0.798 36 H 0.201 0.799 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.192 0.808 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.917 -11.663 -22.532 25.538 hybrid contribution 1.174 0.018 0.100 1.178 sum -1.743 -11.645 -22.432 25.334 Atomic orbital electron populations 1.21889 0.94574 1.02101 1.01906 1.21479 0.96944 0.99687 0.93608 0.89354 1.21831 0.99901 0.79003 0.99787 1.48039 1.54325 1.12225 1.17397 1.17633 0.78610 0.85058 0.83586 1.90834 1.54269 1.63530 1.30776 1.20606 0.95719 0.96045 1.03699 1.18644 0.87422 0.88035 0.96887 1.91635 1.67356 1.64455 1.85018 1.23081 1.00815 0.86136 0.98781 1.67666 1.02100 1.36001 1.06718 1.23051 0.94513 0.93167 0.98241 1.18620 0.82410 0.93140 0.97141 1.91610 1.41423 1.93517 1.82292 1.21829 1.00961 0.94607 0.84426 1.21938 1.02054 0.96231 0.96616 1.21377 1.00334 0.94437 0.95053 0.90870 1.20688 0.96368 0.94892 0.84447 1.42730 1.57567 1.37209 1.02630 1.19063 1.24275 1.12101 0.81899 0.89262 1.24671 1.00285 0.99091 0.95113 1.69699 1.48297 1.43188 0.97056 0.86559 0.81542 0.83611 0.76793 1.21104 1.21726 1.20465 0.92649 0.91545 0.93071 0.90817 0.88703 0.79813 0.79929 0.90852 0.90448 0.89653 0.90719 0.95444 0.95180 0.80774 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.38 37.16 0.31 -1.50 16 2 C -0.10 -1.14 2.72 -90.50 -0.25 -1.39 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.30 5.83 -3.71 -0.02 1.28 16 5 N -0.59 -6.92 2.42 -174.14 -0.42 -7.34 16 6 C 0.57 7.40 6.62 -12.33 -0.08 7.32 16 7 O -0.52 -8.32 16.52 5.32 0.09 -8.24 16 8 C -0.15 -1.60 3.69 -104.55 -0.39 -1.99 16 9 C 0.11 1.10 7.18 -38.80 -0.28 0.82 16 10 F -0.11 -1.17 16.91 2.25 0.04 -1.14 16 11 C 0.07 0.54 11.16 -17.51 -0.20 0.34 16 12 N -0.42 -3.37 10.32 -13.18 -0.14 -3.50 16 13 C 0.07 0.50 11.16 -17.51 -0.20 0.30 16 14 C 0.11 1.00 7.34 -38.80 -0.28 0.72 16 15 F -0.11 -1.09 16.92 2.25 0.04 -1.05 16 16 C 0.10 1.14 6.31 -3.93 -0.02 1.11 16 17 C -0.13 -1.71 4.89 -26.83 -0.13 -1.84 16 18 C -0.09 -1.28 1.96 -90.57 -0.18 -1.46 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C 0.16 2.95 5.19 -4.04 -0.02 2.93 16 21 N -0.76 -17.17 5.12 -59.91 -0.31 -17.48 16 22 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 25 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 26 Si 0.88 21.55 27.73 -169.99 -4.71 16.83 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 30 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 31 H 0.07 0.85 6.59 -51.93 -0.34 0.51 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 35 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.07 0.73 6.22 -51.93 -0.32 0.41 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.25 7.15 -51.93 -0.37 0.88 16 40 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 43 H 0.36 7.88 4.71 -40.82 -0.19 7.69 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.48 361.09 -6.74 -40.21 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.55 Total: 4.82 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.99 Total: -0.25 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.09 Total: -56.63 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.08 Total: -2.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.48 -6.74 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.723 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds