Wall clock time and date at job start Wed Apr 1 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49801 * 2 1 4 4 C 1.53191 * 109.49617 * 239.93294 * 2 1 3 5 5 N 1.46924 * 108.77693 * 294.68430 * 4 2 1 6 6 C 1.34773 * 120.63180 * 126.37172 * 5 4 2 7 7 O 1.21553 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.47849 * 120.00070 * 179.72239 * 6 5 4 9 9 C 1.40128 * 120.95677 * 89.99798 * 8 6 5 10 10 F 1.35095 * 120.52135 * 359.97438 * 9 8 6 11 11 C 1.38432 * 118.95304 * 179.73391 * 9 8 6 12 12 N 1.31761 * 120.93269 * 0.54643 * 11 9 8 13 13 C 1.31764 * 122.14352 * 359.72450 * 12 11 9 14 14 C 1.38436 * 120.92870 * 359.97438 * 13 12 11 15 15 F 1.35100 * 120.51852 * 179.97438 * 14 13 12 16 16 C 1.46931 * 118.73749 * 306.64210 * 5 4 2 17 17 C 1.52760 * 109.00671 * 53.31207 * 16 5 4 18 18 C 1.53045 * 109.38342 * 305.58369 * 17 16 5 19 19 H 1.08998 * 109.45034 * 301.23094 * 18 17 16 20 20 C 1.52998 * 109.46022 * 181.25935 * 18 17 16 21 21 N 1.46502 * 109.46753 * 64.93304 * 20 18 17 22 22 C 1.36940 * 119.99966 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99768 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00074 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00069 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00171 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47330 * 89.99692 * 26 24 22 28 28 H 1.48499 * 109.47515 * 209.99608 * 26 24 22 29 29 H 1.48510 * 109.47093 * 329.99854 * 26 24 22 30 30 H 1.08999 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46795 * 300.06239 * 1 2 3 32 32 H 1.08999 * 109.46876 * 60.06564 * 1 2 3 33 33 H 1.09004 * 109.58065 * 174.89622 * 4 2 1 34 34 H 1.08995 * 109.70332 * 54.54485 * 4 2 1 35 35 H 1.08001 * 119.52847 * 180.27424 * 11 9 8 36 36 H 1.08007 * 119.53872 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.58455 * 173.14501 * 16 5 4 38 38 H 1.09002 * 109.58874 * 293.57059 * 16 5 4 39 39 H 1.09005 * 109.56000 * 185.55132 * 17 16 5 40 40 H 1.08999 * 109.36315 * 65.49444 * 17 16 5 41 41 H 1.09001 * 109.47175 * 184.93375 * 20 18 17 42 42 H 1.08997 * 109.47566 * 304.93850 * 20 18 17 43 43 H 0.96998 * 120.00067 * 0.02562 * 21 20 18 44 44 H 0.96995 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 1.6515 -2.1379 -1.1701 6 6 0.9740 -2.7213 -2.1786 7 8 0.6793 -2.0764 -3.1659 8 6 0.5941 -4.1471 -2.0864 9 6 -0.6299 -4.5320 -1.5231 10 9 -1.4899 -3.6035 -1.0507 11 6 -0.9459 -5.8784 -1.4628 12 7 -0.1105 -6.7912 -1.9156 13 6 1.0526 -6.4746 -2.4478 14 6 1.4498 -5.1528 -2.5551 15 9 2.6444 -4.8377 -3.1017 16 6 2.0091 -2.9026 0.0325 17 6 1.5030 -2.1561 1.2654 18 6 2.0409 -0.7234 1.2482 19 1 3.1306 -0.7450 1.2350 20 6 1.5607 0.0164 2.4984 21 7 2.1467 -0.6050 3.6887 22 6 1.8586 -0.1090 4.9322 23 1 1.1990 0.7399 5.0354 24 6 2.4134 -0.6981 6.0600 25 7 2.1361 -0.2217 7.2552 26 14 3.5537 -2.1668 5.8815 27 1 4.9543 -1.6925 5.7448 28 1 3.4391 -3.0315 7.0834 29 1 3.1744 -2.9442 4.6744 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6459 -1.2981 34 1 1.6028 -0.2732 -2.1403 35 1 -1.8887 -6.1852 -1.0346 36 1 1.7049 -7.2573 -2.8062 37 1 1.5473 -3.8890 -0.0110 38 1 3.0926 -3.0064 0.0908 39 1 1.8481 -2.6635 2.1664 40 1 0.4133 -2.1358 1.2535 41 1 1.8696 1.0603 2.4440 42 1 0.4737 -0.0383 2.5580 43 1 2.7394 -1.3672 3.5959 44 1 2.5241 -0.6331 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184486827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:31 Heat of formation + Delta-G solvation = -90.368879 kcal Electronic energy + Delta-G solvation = -30546.871295 eV Core-core repulsion = 26134.955305 eV Total energy + Delta-G solvation = -4411.915990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.38964 -50.36559 -41.96147 -40.87679 -39.42403 -36.78825 -35.13067 -33.93738 -33.20796 -32.37333 -31.97995 -28.88093 -28.32483 -26.26091 -25.08023 -24.81922 -24.31482 -22.99333 -21.75454 -20.11614 -19.63681 -19.43151 -19.30663 -18.79459 -17.92192 -17.25032 -17.20113 -16.80212 -16.68447 -16.65856 -16.37806 -16.01848 -15.70856 -15.47191 -15.23887 -14.88617 -14.86086 -14.83372 -14.66265 -14.40399 -14.13965 -13.88261 -13.71608 -13.36222 -13.30301 -12.90435 -12.79069 -12.58521 -12.18099 -12.15851 -11.87064 -11.86072 -11.62246 -11.43001 -11.35167 -11.16733 -10.96893 -10.87930 -10.20152 -9.89873 -9.27628 -8.01879 -5.35498 -0.71716 -0.54833 1.00961 1.37020 1.42602 1.49850 1.58797 2.11500 2.30484 2.49451 2.71602 2.81985 3.14523 3.29572 3.39886 3.49911 3.59399 3.65462 3.72381 3.88226 4.02562 4.12389 4.15384 4.19070 4.26606 4.34335 4.56262 4.57849 4.61805 4.64534 4.69630 4.73794 4.89382 4.98048 5.08634 5.09645 5.16485 5.19177 5.20068 5.36843 5.51578 5.76709 5.99428 6.21894 6.36015 6.65524 7.09354 7.84882 8.05312 9.20003 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.003422 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.149157 B = 8181.563829 C = 8916.352920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.101 0.899 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.563 3.437 7 O -0.557 6.557 8 C -0.163 4.163 9 C 0.097 3.903 10 F -0.120 7.120 11 C 0.085 3.915 12 N -0.425 5.425 13 C 0.088 3.912 14 C 0.102 3.898 15 F -0.116 7.116 16 C 0.109 3.891 17 C -0.127 4.127 18 C -0.083 4.083 19 H 0.084 0.916 20 C 0.162 3.838 21 N -0.755 5.755 22 C -0.235 4.235 23 H 0.052 0.948 24 C -0.065 4.065 25 N -0.987 5.987 26 Si 0.956 3.044 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.244 1.244 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.212 0.788 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.367 0.633 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -13.974 -24.033 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.119 0.881 4 C -0.004 4.004 5 N -0.316 5.316 6 C 0.350 3.650 7 O -0.436 6.436 8 C -0.176 4.176 9 C 0.074 3.926 10 F -0.098 7.098 11 C -0.073 4.073 12 N -0.132 5.132 13 C -0.071 4.071 14 C 0.080 3.920 15 F -0.094 7.094 16 C -0.013 4.013 17 C -0.165 4.165 18 C -0.101 4.101 19 H 0.103 0.897 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.367 4.367 23 H 0.070 0.930 24 C -0.257 4.257 25 N -0.637 5.637 26 Si 0.783 3.217 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.168 1.168 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.201 0.799 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.621 -14.287 -24.357 28.285 hybrid contribution 0.676 0.911 0.642 1.304 sum -0.945 -13.376 -23.715 27.243 Atomic orbital electron populations 1.21839 0.95248 1.01396 1.01624 1.21423 0.96255 1.00292 0.92949 0.88119 1.21860 1.01016 0.78680 0.98850 1.48120 1.53686 1.12482 1.17349 1.17983 0.77966 0.85930 0.83165 1.90806 1.55809 1.64739 1.32260 1.20596 0.96773 0.95112 1.05105 1.18824 0.87163 0.88633 0.97954 1.91600 1.67749 1.65092 1.85381 1.23489 1.01444 0.85038 0.97307 1.67807 1.02468 1.35837 1.07101 1.23566 0.94265 0.92973 0.96246 1.18739 0.82186 0.93507 0.97611 1.91595 1.41728 1.93640 1.82480 1.21848 1.02046 0.94581 0.82783 1.21854 1.01480 0.95816 0.97320 1.21271 1.00893 0.94545 0.93440 0.89746 1.20816 0.95713 0.95050 0.84854 1.42683 1.57798 1.37481 1.02117 1.19027 1.22725 1.10714 0.84185 0.93034 1.25550 1.02717 1.02857 0.94535 1.69899 1.50343 1.45376 0.98113 0.85400 0.79006 0.79585 0.77743 1.20409 1.22467 1.16783 0.93572 0.92574 0.92559 0.88774 0.89361 0.77193 0.76644 0.89697 0.88581 0.90693 0.91720 0.95896 0.96018 0.79896 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.38 71.98 0.60 -2.87 16 2 C -0.09 -1.96 2.72 -10.71 -0.03 -1.99 16 3 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.12 2.40 5.83 86.36 0.50 2.90 16 5 N -0.59 -12.79 2.42 -823.13 -1.99 -14.78 16 6 C 0.56 14.23 6.62 86.79 0.57 14.80 16 7 O -0.56 -17.86 16.52 -3.88 -0.06 -17.92 16 8 C -0.16 -3.31 3.69 -19.82 -0.07 -3.38 16 9 C 0.10 1.75 7.18 22.78 0.16 1.91 16 10 F -0.12 -2.59 16.91 44.97 0.76 -1.83 16 11 C 0.09 1.09 11.16 84.75 0.95 2.04 16 12 N -0.43 -5.52 10.32 -195.62 -2.02 -7.53 16 13 C 0.09 0.98 11.16 84.75 0.95 1.93 16 14 C 0.10 1.65 7.34 22.77 0.17 1.81 16 15 F -0.12 -2.07 16.92 44.97 0.76 -1.31 16 16 C 0.11 2.11 6.31 86.22 0.54 2.65 16 17 C -0.13 -3.07 4.89 30.53 0.15 -2.92 16 18 C -0.08 -2.12 1.96 -10.76 -0.02 -2.14 16 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 20 C 0.16 5.76 5.19 86.38 0.45 6.21 16 21 N -0.75 -33.61 5.12 -343.45 -1.76 -35.37 16 22 C -0.24 -13.27 10.47 84.03 0.88 -12.39 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 25 N -0.99 -62.99 13.97 21.65 0.30 -62.69 16 26 Si 0.96 43.83 27.73 68.60 1.90 45.74 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.24 -9.66 6.52 99.48 0.65 -9.02 16 30 H 0.05 1.20 5.97 -2.39 -0.01 1.18 16 31 H 0.06 1.45 6.59 -2.39 -0.02 1.44 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.99 7.00 -2.39 -0.02 1.97 16 35 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.22 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.08 1.48 6.22 -2.38 -0.01 1.46 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.00 7.15 -2.38 -0.02 1.99 16 40 H 0.06 1.70 6.33 -2.39 -0.02 1.69 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.02 0.82 6.74 -2.39 -0.02 0.81 16 43 H 0.37 15.20 4.71 -92.71 -0.44 14.76 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -74.42 361.09 4.72 -69.70 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.56 Total: 20.78 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.27 Total: 5.21 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.47 Total: -120.38 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.06 Total: -17.92 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.52 Total: -3.13 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.74 kcal Total: -74.42 4.72 -69.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.670 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds