Wall clock time and date at job start Wed Apr 1 2020 00:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53187 * 109.49833 * 239.92122 * 2 1 3 5 5 N 1.46923 * 108.77638 * 185.41631 * 4 2 1 6 6 C 1.34783 * 120.62628 * 233.58392 * 5 4 2 7 7 O 1.21542 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.47851 * 119.99683 * 179.97438 * 6 5 4 9 9 C 1.40125 * 120.96339 * 89.71621 * 8 6 5 10 10 F 1.35101 * 120.51640 * 0.02562 * 9 8 6 11 11 C 1.38431 * 118.95932 * 179.77299 * 9 8 6 12 12 N 1.31765 * 120.93040 * 0.51563 * 11 9 8 13 13 C 1.31771 * 122.14189 * 359.74006 * 12 11 9 14 14 C 1.38434 * 120.93032 * 359.97438 * 13 12 11 15 15 F 1.35097 * 120.51861 * 179.97438 * 14 13 12 16 16 C 1.46924 * 118.74353 * 53.60394 * 5 4 2 17 17 C 1.53199 * 108.76350 * 306.38646 * 16 5 4 18 18 C 1.53037 * 109.31109 * 54.65208 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.63275 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.59964 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09001 * 109.58701 * 305.19923 * 4 2 1 34 34 H 1.08997 * 109.59086 * 65.62476 * 4 2 1 35 35 H 1.07996 * 119.53419 * 180.22908 * 11 9 8 36 36 H 1.07996 * 119.53258 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.58757 * 66.17668 * 16 5 4 38 38 H 1.08995 * 109.59234 * 186.46500 * 16 5 4 39 39 H 1.09005 * 109.50670 * 294.69833 * 17 16 5 40 40 H 1.08994 * 109.48659 * 174.59704 * 17 16 5 41 41 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 42 42 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 43 43 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 44 44 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2811 -0.3864 -2.1783 7 8 3.7720 0.1053 -3.1664 8 6 5.7522 -0.4988 -2.0829 9 6 6.4195 -1.6409 -2.5452 10 9 5.7282 -2.6659 -3.0901 11 6 7.7985 -1.7003 -2.4398 12 7 8.4802 -0.7075 -1.9051 13 6 7.8936 0.3823 -1.4530 14 6 6.5190 0.5315 -1.5225 15 9 5.9262 1.6522 -1.0559 16 6 4.1054 -1.4267 0.0308 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 -1.2980 34 1 1.7638 -0.1579 -2.1389 35 1 8.3226 -2.5746 -2.7966 36 1 8.4935 1.1702 -1.0223 37 1 3.8376 -2.4817 0.0868 38 1 5.1898 -1.3268 -0.0149 39 1 3.9157 0.3394 1.2538 40 1 3.9336 -1.1891 2.1669 41 1 0.4167 0.0350 2.4434 42 1 1.9188 0.9830 2.5581 43 1 2.4132 -1.5965 3.5963 44 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184486832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:35 Heat of formation + Delta-G solvation = -75.693341 kcal Electronic energy + Delta-G solvation = -30195.897799 eV Core-core repulsion = 25784.618188 eV Total energy + Delta-G solvation = -4411.279611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.65054 -49.59380 -41.01013 -39.99902 -38.23788 -35.31706 -34.06429 -32.93833 -32.15000 -31.33516 -30.28722 -27.35325 -26.89267 -25.16727 -24.14378 -23.56081 -22.77138 -21.68704 -20.62420 -19.65751 -18.71619 -18.67312 -18.02617 -17.33388 -17.06714 -16.46674 -16.35689 -16.02810 -15.91587 -15.34542 -14.98966 -14.73912 -14.60759 -14.25685 -14.11435 -13.98873 -13.73985 -13.63068 -13.49551 -13.16666 -13.07150 -12.66085 -12.54943 -12.11480 -12.00322 -11.79123 -11.06689 -10.93513 -10.78189 -10.75115 -10.56157 -10.43370 -10.40705 -10.23913 -10.02570 -9.97245 -9.55107 -9.20802 -8.92986 -8.85613 -7.01913 -6.13059 -3.12388 0.02024 0.09667 1.97097 2.47419 2.77137 3.00767 3.40108 3.50082 3.53317 3.65473 3.70786 3.75104 4.06474 4.34360 4.57483 4.61175 4.72974 4.79000 4.83316 4.88091 4.90427 5.11574 5.13343 5.23606 5.33378 5.54093 5.56284 5.63161 5.68953 5.73050 5.77013 5.81916 5.87229 6.04450 6.12011 6.14978 6.25479 6.34722 6.39712 6.69912 6.78684 6.96041 6.99085 7.62378 7.78677 8.73105 9.20507 10.06781 10.21796 11.35441 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.003078 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.941237 B = 9094.460273 C =10053.334405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.566 3.434 7 O -0.520 6.520 8 C -0.148 4.148 9 C 0.110 3.890 10 F -0.110 7.110 11 C 0.069 3.931 12 N -0.418 5.418 13 C 0.071 3.929 14 C 0.113 3.887 15 F -0.107 7.107 16 C 0.104 3.896 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.163 3.837 21 N -0.743 5.743 22 C -0.331 4.331 23 H 0.063 0.937 24 C -0.045 4.045 25 N -0.944 5.944 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.018 0.982 43 H 0.366 0.634 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 1.772 -19.096 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.351 3.649 7 O -0.396 6.396 8 C -0.161 4.161 9 C 0.087 3.913 10 F -0.088 7.088 11 C -0.089 4.089 12 N -0.125 5.125 13 C -0.088 4.088 14 C 0.090 3.910 15 F -0.085 7.085 16 C -0.018 4.018 17 C -0.162 4.162 18 C -0.109 4.109 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.389 5.389 22 C -0.462 4.462 23 H 0.081 0.919 24 C -0.242 4.242 25 N -0.590 5.590 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.199 0.801 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.916 1.842 -17.895 20.078 hybrid contribution -1.072 0.219 -1.671 1.997 sum 7.845 2.061 -19.566 21.181 Atomic orbital electron populations 1.21827 0.93977 1.02324 1.02295 1.21466 0.96429 1.00015 0.93776 0.90645 1.21842 0.77392 1.01489 0.99676 1.48095 1.07489 1.59069 1.17587 1.17663 0.84845 0.78875 0.83547 1.90828 1.73838 1.44177 1.30713 1.20592 0.96409 0.95209 1.03847 1.18621 0.90939 0.84542 0.97180 1.91610 1.79238 1.55636 1.82343 1.23049 0.88469 0.99193 0.98211 1.67670 1.38533 0.99573 1.06682 1.23079 0.89704 0.97212 0.98792 1.18643 0.91804 0.83572 0.96950 1.91633 1.83969 1.47692 1.85231 1.21930 0.97552 0.97991 0.84312 1.21927 0.96329 1.01276 0.96715 1.21372 0.94403 1.00296 0.94862 0.90903 1.20680 0.96797 0.93959 0.85031 1.42375 1.66047 1.28671 1.01783 1.20030 1.32051 1.08865 0.85210 0.91861 1.25754 0.99522 0.96592 1.02360 1.70902 1.40017 1.23110 1.24972 0.83252 0.75404 0.74937 0.75421 1.21015 1.22289 1.22281 0.91149 0.92776 0.92405 0.90785 0.88805 0.79896 0.79805 0.90350 0.90807 0.91430 0.89373 0.95579 0.96430 0.80098 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 2 C -0.10 -1.24 2.41 -90.50 -0.22 -1.46 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.43 5.72 -3.71 -0.02 1.41 16 5 N -0.59 -7.54 2.97 -173.89 -0.52 -8.05 16 6 C 0.57 7.86 6.62 -12.32 -0.08 7.78 16 7 O -0.52 -8.73 16.52 5.33 0.09 -8.64 16 8 C -0.15 -1.70 3.67 -104.55 -0.38 -2.08 16 9 C 0.11 1.07 7.34 -38.80 -0.28 0.78 16 10 F -0.11 -1.15 16.92 2.25 0.04 -1.11 16 11 C 0.07 0.53 11.16 -17.51 -0.20 0.34 16 12 N -0.42 -3.55 10.33 -13.18 -0.14 -3.69 16 13 C 0.07 0.58 11.16 -17.51 -0.20 0.38 16 14 C 0.11 1.17 7.21 -38.80 -0.28 0.89 16 15 F -0.11 -1.25 16.92 2.25 0.04 -1.22 16 16 C 0.10 1.24 6.34 -3.71 -0.02 1.22 16 17 C -0.12 -1.77 5.25 -26.61 -0.14 -1.91 16 18 C -0.09 -1.36 1.73 -90.58 -0.16 -1.51 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.16 5.41 -4.05 -0.02 3.14 16 21 N -0.74 -18.14 5.32 -59.91 -0.32 -18.46 16 22 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 23 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 25 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 26 Si 1.08 25.70 29.92 -169.99 -5.09 20.61 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.30 -6.74 7.11 56.52 0.40 -6.33 16 30 H 0.07 0.90 6.29 -51.93 -0.33 0.58 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 35 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.80 6.23 -51.93 -0.32 0.48 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 41 H 0.03 0.52 6.14 -51.93 -0.32 0.20 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.37 9.00 5.68 -40.82 -0.23 8.77 16 44 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -33.67 366.57 -7.18 -40.85 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.65 Total: 5.33 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.92 Total: -3.20 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.21 Total: -58.14 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.67 -7.18 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.847 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds