Wall clock time and date at job start Wed Apr 1 2020 00:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53187 * 109.49833 * 239.92122 * 2 1 3 5 5 N 1.46923 * 108.77638 * 185.41631 * 4 2 1 6 6 C 1.34783 * 120.62628 * 233.58392 * 5 4 2 7 7 O 1.21542 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.47851 * 119.99683 * 179.97438 * 6 5 4 9 9 C 1.40125 * 120.96339 * 89.71621 * 8 6 5 10 10 F 1.35101 * 120.51640 * 0.02562 * 9 8 6 11 11 C 1.38431 * 118.95932 * 179.77299 * 9 8 6 12 12 N 1.31765 * 120.93040 * 0.51563 * 11 9 8 13 13 C 1.31771 * 122.14189 * 359.74006 * 12 11 9 14 14 C 1.38434 * 120.93032 * 359.97438 * 13 12 11 15 15 F 1.35097 * 120.51861 * 179.97438 * 14 13 12 16 16 C 1.46924 * 118.74353 * 53.60394 * 5 4 2 17 17 C 1.53199 * 108.76350 * 306.38646 * 16 5 4 18 18 C 1.53037 * 109.31109 * 54.65208 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.63275 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.59964 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09001 * 109.58701 * 305.19923 * 4 2 1 34 34 H 1.08997 * 109.59086 * 65.62476 * 4 2 1 35 35 H 1.07996 * 119.53419 * 180.22908 * 11 9 8 36 36 H 1.07996 * 119.53258 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.58757 * 66.17668 * 16 5 4 38 38 H 1.08995 * 109.59234 * 186.46500 * 16 5 4 39 39 H 1.09005 * 109.50670 * 294.69833 * 17 16 5 40 40 H 1.08994 * 109.48659 * 174.59704 * 17 16 5 41 41 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 42 42 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 43 43 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 44 44 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2811 -0.3864 -2.1783 7 8 3.7720 0.1053 -3.1664 8 6 5.7522 -0.4988 -2.0829 9 6 6.4195 -1.6409 -2.5452 10 9 5.7282 -2.6659 -3.0901 11 6 7.7985 -1.7003 -2.4398 12 7 8.4802 -0.7075 -1.9051 13 6 7.8936 0.3823 -1.4530 14 6 6.5190 0.5315 -1.5225 15 9 5.9262 1.6522 -1.0559 16 6 4.1054 -1.4267 0.0308 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 -1.2980 34 1 1.7638 -0.1579 -2.1389 35 1 8.3226 -2.5746 -2.7966 36 1 8.4935 1.1702 -1.0223 37 1 3.8376 -2.4817 0.0868 38 1 5.1898 -1.3268 -0.0149 39 1 3.9157 0.3394 1.2538 40 1 3.9336 -1.1891 2.1669 41 1 0.4167 0.0350 2.4434 42 1 1.9188 0.9830 2.5581 43 1 2.4132 -1.5965 3.5963 44 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184486832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:35 Heat of formation + Delta-G solvation = -96.789860 kcal Electronic energy + Delta-G solvation = -30196.812612 eV Core-core repulsion = 25784.618188 eV Total energy + Delta-G solvation = -4412.194424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.42554 -50.39817 -41.94780 -40.85699 -39.43920 -36.93017 -35.41941 -33.96497 -33.39109 -32.01619 -31.99855 -28.45368 -28.22209 -26.20105 -25.34055 -24.84975 -24.04638 -23.00889 -21.69833 -20.78131 -19.51985 -19.44563 -19.36715 -18.91995 -18.02580 -17.25722 -17.23470 -16.98731 -16.74222 -16.71462 -16.25647 -16.04466 -15.68259 -15.61069 -15.35010 -15.01044 -14.91318 -14.71508 -14.46943 -14.41747 -14.32668 -14.00726 -13.40612 -13.28268 -13.09800 -12.95839 -12.71582 -12.58473 -12.17391 -11.98241 -11.89904 -11.83363 -11.63500 -11.50404 -11.21028 -11.16229 -10.97733 -10.88459 -10.22920 -9.99422 -9.08999 -8.39477 -5.32911 -0.75377 -0.57541 0.93388 1.51112 1.58735 1.67909 1.84623 2.08956 2.26998 2.68394 2.70705 2.75400 3.11788 3.36229 3.39176 3.50078 3.53023 3.61289 3.67790 3.77933 4.01044 4.05364 4.12320 4.15344 4.21696 4.33762 4.45691 4.52450 4.54236 4.56267 4.61538 4.68238 4.83304 4.95075 4.96467 5.03725 5.10190 5.16352 5.18588 5.31499 5.43704 5.58729 5.91271 6.33158 6.50989 6.57146 7.10365 8.00918 8.11575 9.12688 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.003078 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.941237 B = 9094.460273 C =10053.334405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.563 3.437 7 O -0.556 6.556 8 C -0.164 4.164 9 C 0.102 3.898 10 F -0.116 7.116 11 C 0.089 3.911 12 N -0.424 5.424 13 C 0.087 3.913 14 C 0.096 3.904 15 F -0.121 7.121 16 C 0.112 3.888 17 C -0.118 4.118 18 C -0.079 4.079 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.753 5.753 22 C -0.337 4.337 23 H 0.062 0.938 24 C -0.100 4.100 25 N -0.972 5.972 26 Si 1.125 2.875 27 H -0.291 1.291 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.218 0.782 36 H 0.213 0.787 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.008 0.992 43 H 0.363 0.637 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 1.569 -19.668 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.349 3.651 7 O -0.435 6.435 8 C -0.177 4.177 9 C 0.079 3.921 10 F -0.094 7.094 11 C -0.069 4.069 12 N -0.131 5.131 13 C -0.071 4.071 14 C 0.074 3.926 15 F -0.099 7.099 16 C -0.010 4.010 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.092 0.908 20 C 0.037 3.963 21 N -0.398 5.398 22 C -0.468 4.468 23 H 0.080 0.920 24 C -0.291 4.291 25 N -0.620 5.620 26 Si 0.950 3.050 27 H -0.217 1.217 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.230 0.770 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.026 0.974 43 H 0.195 0.805 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.695 1.658 -18.494 20.946 hybrid contribution -1.298 0.309 -1.545 2.042 sum 8.396 1.967 -20.039 21.816 Atomic orbital electron populations 1.21796 0.92873 1.02882 1.02537 1.21358 0.97281 0.99150 0.92901 0.91655 1.21863 0.77295 1.02237 0.98859 1.48176 1.07758 1.58586 1.17529 1.18034 0.85974 0.77995 0.83058 1.90797 1.74837 1.45794 1.32063 1.20579 0.95105 0.96624 1.05399 1.18752 0.91605 0.84023 0.97673 1.91595 1.79532 1.55781 1.82530 1.23580 0.87522 0.99661 0.96154 1.67817 1.38412 0.99839 1.07026 1.23508 0.88830 0.97566 0.97237 1.18836 0.92573 0.83167 0.98042 1.91597 1.84333 1.48378 1.85602 1.21890 0.98230 0.98148 0.82689 1.21798 0.95770 1.00811 0.97211 1.21248 0.94837 0.99990 0.93748 0.90754 1.20793 0.96822 0.93356 0.85317 1.42536 1.65985 1.28956 1.02301 1.20366 1.31171 1.08541 0.86756 0.92029 1.27116 0.99534 0.96430 1.06028 1.71000 1.41932 1.24531 1.24582 0.82656 0.76031 0.74958 0.71348 1.21731 1.20587 1.20503 0.92483 0.90931 0.91693 0.89113 0.89085 0.76518 0.77039 0.88919 0.89524 0.92421 0.91242 0.95457 0.97443 0.80476 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.82 71.98 0.63 -2.56 16 2 C -0.09 -2.18 2.41 -10.72 -0.03 -2.20 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.12 2.78 5.72 86.36 0.49 3.27 16 5 N -0.59 -14.66 2.97 -822.33 -2.44 -17.10 16 6 C 0.56 15.50 6.62 86.79 0.57 16.08 16 7 O -0.56 -18.84 16.52 -3.85 -0.06 -18.90 16 8 C -0.16 -3.65 3.67 -19.82 -0.07 -3.72 16 9 C 0.10 1.82 7.34 22.77 0.17 1.99 16 10 F -0.12 -2.27 16.92 44.97 0.76 -1.50 16 11 C 0.09 1.12 11.16 84.75 0.95 2.07 16 12 N -0.42 -6.06 10.33 -195.62 -2.02 -8.08 16 13 C 0.09 1.23 11.16 84.75 0.95 2.17 16 14 C 0.10 1.90 7.21 22.78 0.16 2.07 16 15 F -0.12 -2.82 16.92 44.97 0.76 -2.06 16 16 C 0.11 2.58 6.34 86.37 0.55 3.12 16 17 C -0.12 -3.36 5.25 30.67 0.16 -3.20 16 18 C -0.08 -2.37 1.73 -10.77 -0.02 -2.38 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.16 6.41 5.41 86.38 0.47 6.87 16 21 N -0.75 -37.22 5.32 -343.47 -1.83 -39.05 16 22 C -0.34 -18.91 9.99 84.03 0.84 -18.07 16 23 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 24 C -0.10 -5.71 5.50 84.86 0.47 -5.25 16 25 N -0.97 -59.67 13.70 21.65 0.30 -59.38 16 26 Si 1.13 51.47 29.92 68.60 2.05 53.52 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.06 1.43 6.29 -2.39 -0.02 1.41 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.24 7.00 -2.39 -0.02 2.23 16 35 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.79 6.23 -2.39 -0.01 1.78 16 39 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.07 2.27 7.15 -2.39 -0.02 2.25 16 41 H 0.03 1.09 6.14 -2.39 -0.01 1.07 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 43 H 0.36 18.22 5.68 -92.71 -0.53 17.69 16 44 H 0.24 14.84 6.77 -92.71 -0.63 14.21 16 Total: -1.00 -72.91 366.57 4.47 -68.44 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.66 Total: 23.87 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 6.29 Total: 0.25 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.99 Total: -123.60 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.06 Total: -18.90 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.52 Total: -3.56 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.05 Total: 53.52 kcal Total: -72.91 4.47 -68.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.354 kcal (2) G-P(sol) polarization free energy of solvation -72.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds