Wall clock time and date at job start Wed Apr 1 2020 00:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46935 * 108.77357 * 65.31925 * 4 2 1 6 6 C 1.34777 * 120.62696 * 233.59166 * 5 4 2 7 7 O 1.21545 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.47848 * 119.99800 * 179.97438 * 6 5 4 9 9 C 1.40125 * 120.95881 * 89.71560 * 8 6 5 10 10 F 1.35105 * 120.52321 * 0.02562 * 9 8 6 11 11 C 1.38430 * 118.95896 * 179.70811 * 9 8 6 12 12 N 1.31773 * 120.92972 * 0.57937 * 11 9 8 13 13 C 1.31766 * 122.13711 * 359.71987 * 12 11 9 14 14 C 1.38433 * 120.93544 * 359.96974 * 13 12 11 15 15 F 1.35095 * 120.52658 * 180.02562 * 14 13 12 16 16 C 1.46922 * 118.73854 * 53.60530 * 5 4 2 17 17 C 1.53189 * 108.77709 * 306.39365 * 16 5 4 18 18 C 1.53046 * 109.49648 * 239.93929 * 2 1 3 19 19 H 1.09004 * 109.45579 * 181.39362 * 18 2 1 20 20 C 1.52993 * 109.46203 * 61.43406 * 18 2 1 21 21 N 1.46503 * 109.47451 * 175.00061 * 20 18 2 22 22 C 1.36931 * 120.00083 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00399 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99940 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99596 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00058 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47313 * 89.99866 * 26 24 22 28 28 H 1.48500 * 109.47097 * 210.00279 * 26 24 22 29 29 H 1.48501 * 109.47230 * 329.99900 * 26 24 22 30 30 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 33 33 H 1.08994 * 109.59134 * 185.10276 * 4 2 1 34 34 H 1.09002 * 109.58912 * 305.53178 * 4 2 1 35 35 H 1.07998 * 119.54120 * 180.30165 * 11 9 8 36 36 H 1.08004 * 119.53720 * 179.97438 * 13 12 11 37 37 H 1.09003 * 109.58287 * 66.18381 * 16 5 4 38 38 H 1.08999 * 109.58546 * 186.46428 * 16 5 4 39 39 H 1.09002 * 109.49258 * 174.58318 * 17 16 5 40 40 H 1.08993 * 109.49716 * 294.64875 * 17 16 5 41 41 H 1.08999 * 109.46974 * 295.00245 * 20 18 2 42 42 H 1.09000 * 109.47395 * 54.99479 * 20 18 2 43 43 H 0.97000 * 119.99146 * 359.97438 * 21 20 18 44 44 H 0.97002 * 119.99342 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 1.6516 -2.1379 1.1700 6 6 0.9748 -2.7215 2.1789 7 8 0.6815 -2.0771 3.1669 8 6 0.5891 -4.1456 2.0838 9 6 1.4427 -5.1560 2.5465 10 9 2.6397 -4.8469 3.0913 11 6 1.0373 -6.4756 2.4427 12 7 -0.1263 -6.7866 1.9081 13 6 -0.9570 -5.8696 1.4549 14 6 -0.6380 -4.5243 1.5232 15 9 -1.4961 -3.5910 1.0566 16 6 2.0140 -2.9040 -0.0301 17 6 1.5030 -2.1560 -1.2655 18 6 2.0408 -0.7227 -1.2487 19 1 3.1305 -0.7440 -1.2356 20 6 1.5607 0.0178 -2.4984 21 7 2.1467 -0.6027 -3.6891 22 6 1.8577 -0.1067 -4.9323 23 1 1.1981 0.7423 -5.0350 24 6 2.4134 -0.6943 -6.0605 25 7 3.2185 -1.7281 -5.9351 26 14 2.0198 -0.0172 -7.7563 27 1 3.0131 1.0267 -8.1153 28 1 2.0746 -1.1165 -8.7532 29 1 0.6587 0.5765 -7.7486 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 3.1275 -0.6459 1.2981 34 1 1.6008 -0.2726 2.1390 35 1 1.6856 -7.2616 2.8008 36 1 -1.9002 -6.1718 1.0243 37 1 3.0980 -3.0042 -0.0861 38 1 1.5575 -3.8927 0.0158 39 1 1.8481 -2.6633 -2.1664 40 1 0.4133 -2.1363 -1.2538 41 1 0.4737 -0.0367 -2.5579 42 1 1.8695 1.0617 -2.4434 43 1 2.7394 -1.3650 -3.5967 44 1 3.6065 -2.1389 -6.7235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184486833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:39 Heat of formation + Delta-G solvation = -73.322963 kcal Electronic energy + Delta-G solvation = -30429.899165 eV Core-core repulsion = 26018.722341 eV Total energy + Delta-G solvation = -4411.176823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.60990 -49.55626 -41.00285 -40.01583 -38.20907 -35.09962 -33.78623 -32.79331 -31.78227 -31.29765 -30.40703 -27.31262 -27.08952 -25.20925 -24.10573 -23.67275 -23.12621 -21.68843 -20.61698 -18.85035 -18.68092 -18.51794 -18.01587 -17.16440 -16.90099 -16.43428 -16.31446 -15.88329 -15.85160 -15.40674 -14.99852 -14.63425 -14.43597 -14.22479 -14.08357 -13.85771 -13.78666 -13.69590 -13.62326 -13.00089 -12.65757 -12.60368 -12.53897 -12.28808 -11.66645 -11.48917 -11.10630 -11.00087 -10.89126 -10.78339 -10.42777 -10.40191 -10.32729 -10.23485 -10.03315 -9.93333 -9.67531 -9.51419 -8.88944 -8.81630 -6.93918 -5.79696 -3.07671 0.06279 0.13411 2.03574 2.54327 2.81147 3.04839 3.41577 3.44036 3.47130 3.48394 3.70576 3.79796 4.10519 4.38275 4.55863 4.65238 4.78162 4.86393 4.92537 4.93347 5.01805 5.14297 5.17026 5.33210 5.46106 5.55993 5.62321 5.70935 5.75245 5.76021 5.85520 5.97885 6.02874 6.10130 6.22902 6.30949 6.35236 6.40494 6.58225 6.75767 6.89067 7.02646 7.03772 7.67876 7.69392 8.39699 9.50986 10.08723 10.43314 11.43300 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003055 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.329172 B = 9161.631732 C = 9816.108853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.566 3.434 7 O -0.521 6.521 8 C -0.147 4.147 9 C 0.110 3.890 10 F -0.110 7.110 11 C 0.069 3.931 12 N -0.418 5.418 13 C 0.070 3.930 14 C 0.113 3.887 15 F -0.107 7.107 16 C 0.104 3.896 17 C -0.127 4.127 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -8.117 19.041 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.319 5.319 6 C 0.350 3.650 7 O -0.397 6.397 8 C -0.160 4.160 9 C 0.087 3.913 10 F -0.088 7.088 11 C -0.090 4.090 12 N -0.125 5.125 13 C -0.088 4.088 14 C 0.090 3.910 15 F -0.085 7.085 16 C -0.018 4.018 17 C -0.165 4.165 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.201 0.799 36 H 0.201 0.799 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.203 -8.473 19.366 21.769 hybrid contribution 0.381 1.175 -1.008 1.594 sum -4.822 -7.298 18.358 20.335 Atomic orbital electron populations 1.21878 0.94739 1.02066 1.01674 1.21492 0.96805 0.99620 0.93897 0.89600 1.21824 0.99882 0.79059 0.99719 1.48062 1.54165 1.12145 1.17525 1.17637 0.78691 0.85037 0.83596 1.90825 1.54549 1.63528 1.30775 1.20606 0.95603 0.96056 1.03704 1.18620 0.82330 0.93155 0.97195 1.91611 1.41225 1.93658 1.82347 1.23042 0.94423 0.93249 0.98257 1.67669 1.02245 1.35890 1.06709 1.23070 1.00843 0.86099 0.98826 1.18635 0.87436 0.87946 0.96955 1.91630 1.67508 1.64144 1.85234 1.21937 1.01000 0.94489 0.84379 1.21981 1.01557 0.96171 0.96753 1.21327 1.00360 0.94423 0.94645 0.90848 1.20702 0.95971 0.94657 0.85533 1.42374 1.56854 1.37555 1.00851 1.19226 1.23082 1.10823 0.83824 0.91276 1.24716 1.00061 0.98355 0.97802 1.69651 1.35694 1.24410 1.28564 0.86204 0.77822 0.77811 0.84454 1.21750 1.21775 1.20786 0.93220 0.92629 0.91721 0.90819 0.88847 0.79946 0.79855 0.90351 0.90941 0.89077 0.91147 0.96014 0.96384 0.78337 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.38 37.16 0.31 -1.59 16 2 C -0.10 -1.24 2.72 -90.50 -0.25 -1.48 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.40 5.83 -3.71 -0.02 1.38 16 5 N -0.59 -7.37 2.41 -173.88 -0.42 -7.79 16 6 C 0.57 7.77 6.62 -12.33 -0.08 7.69 16 7 O -0.52 -8.67 16.52 5.33 0.09 -8.58 16 8 C -0.15 -1.68 3.67 -104.55 -0.38 -2.07 16 9 C 0.11 1.07 7.34 -38.80 -0.28 0.78 16 10 F -0.11 -1.16 16.92 2.25 0.04 -1.12 16 11 C 0.07 0.53 11.16 -17.51 -0.20 0.34 16 12 N -0.42 -3.58 10.33 -13.18 -0.14 -3.71 16 13 C 0.07 0.57 11.16 -17.51 -0.20 0.38 16 14 C 0.11 1.16 7.21 -38.80 -0.28 0.88 16 15 F -0.11 -1.24 16.91 2.25 0.04 -1.20 16 16 C 0.10 1.24 6.34 -3.71 -0.02 1.21 16 17 C -0.13 -1.80 4.91 -26.58 -0.13 -1.93 16 18 C -0.09 -1.32 1.96 -90.55 -0.18 -1.49 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.03 5.19 -4.04 -0.02 3.01 16 21 N -0.73 -17.78 5.32 -59.91 -0.32 -18.10 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 26 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 32 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.79 6.23 -51.93 -0.32 0.47 16 39 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 40 H 0.07 1.03 6.34 -51.93 -0.33 0.71 16 41 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 9.66 6.85 -40.82 -0.28 9.38 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -32.36 364.28 -7.09 -39.45 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.60 Total: 5.38 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.98 Total: -0.06 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.15 Total: -56.48 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.36 -7.09 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.870 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds