Wall clock time and date at job start Wed Apr 1 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46935 * 108.77357 * 65.31925 * 4 2 1 6 6 C 1.34777 * 120.62696 * 233.59166 * 5 4 2 7 7 O 1.21545 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.47848 * 119.99800 * 179.97438 * 6 5 4 9 9 C 1.40125 * 120.95881 * 89.71560 * 8 6 5 10 10 F 1.35105 * 120.52321 * 0.02562 * 9 8 6 11 11 C 1.38430 * 118.95896 * 179.70811 * 9 8 6 12 12 N 1.31773 * 120.92972 * 0.57937 * 11 9 8 13 13 C 1.31766 * 122.13711 * 359.71987 * 12 11 9 14 14 C 1.38433 * 120.93544 * 359.96974 * 13 12 11 15 15 F 1.35095 * 120.52658 * 180.02562 * 14 13 12 16 16 C 1.46922 * 118.73854 * 53.60530 * 5 4 2 17 17 C 1.53189 * 108.77709 * 306.39365 * 16 5 4 18 18 C 1.53046 * 109.49648 * 239.93929 * 2 1 3 19 19 H 1.09004 * 109.45579 * 181.39362 * 18 2 1 20 20 C 1.52993 * 109.46203 * 61.43406 * 18 2 1 21 21 N 1.46503 * 109.47451 * 175.00061 * 20 18 2 22 22 C 1.36931 * 120.00083 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00399 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99940 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99596 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00058 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47313 * 89.99866 * 26 24 22 28 28 H 1.48500 * 109.47097 * 210.00279 * 26 24 22 29 29 H 1.48501 * 109.47230 * 329.99900 * 26 24 22 30 30 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 33 33 H 1.08994 * 109.59134 * 185.10276 * 4 2 1 34 34 H 1.09002 * 109.58912 * 305.53178 * 4 2 1 35 35 H 1.07998 * 119.54120 * 180.30165 * 11 9 8 36 36 H 1.08004 * 119.53720 * 179.97438 * 13 12 11 37 37 H 1.09003 * 109.58287 * 66.18381 * 16 5 4 38 38 H 1.08999 * 109.58546 * 186.46428 * 16 5 4 39 39 H 1.09002 * 109.49258 * 174.58318 * 17 16 5 40 40 H 1.08993 * 109.49716 * 294.64875 * 17 16 5 41 41 H 1.08999 * 109.46974 * 295.00245 * 20 18 2 42 42 H 1.09000 * 109.47395 * 54.99479 * 20 18 2 43 43 H 0.97000 * 119.99146 * 359.97438 * 21 20 18 44 44 H 0.97002 * 119.99342 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 1.6516 -2.1379 1.1700 6 6 0.9748 -2.7215 2.1789 7 8 0.6815 -2.0771 3.1669 8 6 0.5891 -4.1456 2.0838 9 6 1.4427 -5.1560 2.5465 10 9 2.6397 -4.8469 3.0913 11 6 1.0373 -6.4756 2.4427 12 7 -0.1263 -6.7866 1.9081 13 6 -0.9570 -5.8696 1.4549 14 6 -0.6380 -4.5243 1.5232 15 9 -1.4961 -3.5910 1.0566 16 6 2.0140 -2.9040 -0.0301 17 6 1.5030 -2.1560 -1.2655 18 6 2.0408 -0.7227 -1.2487 19 1 3.1305 -0.7440 -1.2356 20 6 1.5607 0.0178 -2.4984 21 7 2.1467 -0.6027 -3.6891 22 6 1.8577 -0.1067 -4.9323 23 1 1.1981 0.7423 -5.0350 24 6 2.4134 -0.6943 -6.0605 25 7 3.2185 -1.7281 -5.9351 26 14 2.0198 -0.0172 -7.7563 27 1 3.0131 1.0267 -8.1153 28 1 2.0746 -1.1165 -8.7532 29 1 0.6587 0.5765 -7.7486 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 3.1275 -0.6459 1.2981 34 1 1.6008 -0.2726 2.1390 35 1 1.6856 -7.2616 2.8008 36 1 -1.9002 -6.1718 1.0243 37 1 3.0980 -3.0042 -0.0861 38 1 1.5575 -3.8927 0.0158 39 1 1.8481 -2.6633 -2.1664 40 1 0.4133 -2.1363 -1.2538 41 1 0.4737 -0.0367 -2.5579 42 1 1.8695 1.0617 -2.4434 43 1 2.7394 -1.3650 -3.5967 44 1 3.6065 -2.1389 -6.7235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184486833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:38 Heat of formation + Delta-G solvation = -92.996505 kcal Electronic energy + Delta-G solvation = -30430.752274 eV Core-core repulsion = 26018.722341 eV Total energy + Delta-G solvation = -4412.029932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.38116 -50.35740 -41.94478 -40.85673 -39.37841 -36.65118 -35.11237 -33.88261 -33.05546 -32.05956 -31.97104 -28.58751 -28.31424 -26.25259 -25.30435 -24.81186 -24.31606 -23.05099 -21.70146 -19.89513 -19.50789 -19.38962 -19.21226 -18.69863 -17.90390 -17.24005 -17.18681 -16.81841 -16.67628 -16.65823 -16.36297 -15.88743 -15.53440 -15.45410 -15.38777 -14.94117 -14.87738 -14.79982 -14.46462 -14.38860 -14.05412 -13.79672 -13.65229 -13.35046 -12.98774 -12.83660 -12.77351 -12.56946 -12.21104 -12.11918 -11.92064 -11.85203 -11.62500 -11.39160 -11.29629 -11.15857 -10.93144 -10.85812 -10.19243 -9.89002 -8.96215 -7.94209 -5.21573 -0.70853 -0.53859 1.01393 1.48252 1.48889 1.57303 1.59611 2.12692 2.31210 2.56773 2.72432 2.82418 3.15382 3.39456 3.40927 3.60752 3.64063 3.69292 3.75272 3.91975 4.11516 4.16229 4.17737 4.27439 4.29329 4.38225 4.57176 4.59933 4.63706 4.65207 4.71284 4.77403 4.91592 5.01432 5.10890 5.12900 5.18296 5.20618 5.21997 5.40393 5.51456 5.54282 6.00321 6.28871 6.36624 6.65717 7.35853 8.12029 8.36032 9.29112 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003055 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.329172 B = 9161.631732 C = 9816.108853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.100 0.900 4 C 0.117 3.883 5 N -0.585 5.585 6 C 0.564 3.436 7 O -0.557 6.557 8 C -0.164 4.164 9 C 0.101 3.899 10 F -0.116 7.116 11 C 0.088 3.912 12 N -0.425 5.425 13 C 0.086 3.914 14 C 0.097 3.903 15 F -0.120 7.120 16 C 0.112 3.888 17 C -0.119 4.119 18 C -0.078 4.078 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.742 5.742 22 C -0.245 4.245 23 H 0.071 0.929 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.217 0.783 36 H 0.212 0.788 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -8.866 19.581 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.118 0.882 4 C -0.004 4.004 5 N -0.316 5.316 6 C 0.350 3.650 7 O -0.436 6.436 8 C -0.176 4.176 9 C 0.079 3.921 10 F -0.095 7.095 11 C -0.071 4.071 12 N -0.132 5.132 13 C -0.073 4.073 14 C 0.075 3.925 15 F -0.098 7.098 16 C -0.010 4.010 17 C -0.157 4.157 18 C -0.097 4.097 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.385 5.385 22 C -0.377 4.377 23 H 0.089 0.911 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.234 0.766 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.208 0.792 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.424 -9.202 19.916 22.600 hybrid contribution 0.411 1.406 -1.131 1.851 sum -5.012 -7.796 18.785 20.947 Atomic orbital electron populations 1.21824 0.95026 1.01365 1.01696 1.21429 0.96416 1.00163 0.92902 0.88219 1.21864 1.00868 0.78735 0.98971 1.48123 1.53646 1.12408 1.17388 1.17979 0.78004 0.85929 0.83115 1.90795 1.55972 1.64708 1.32108 1.20602 0.96718 0.95107 1.05200 1.18754 0.82104 0.93562 0.97720 1.91594 1.41557 1.93784 1.82545 1.23562 0.94190 0.93035 0.96263 1.67813 1.02589 1.35716 1.07061 1.23499 1.01498 0.84962 0.97297 1.18820 0.87152 0.88586 0.97989 1.91596 1.67858 1.64763 1.85577 1.21885 1.01693 0.94527 0.82903 1.21832 1.01011 0.95839 0.97004 1.21203 1.00258 0.94578 0.93677 0.90850 1.20822 0.95469 0.94770 0.85615 1.42547 1.56891 1.37506 1.01541 1.19595 1.22340 1.10498 0.85249 0.91086 1.25468 1.00589 0.99027 1.01249 1.69792 1.37031 1.25768 1.29109 0.85215 0.77943 0.76949 0.80112 1.21527 1.22121 1.19705 0.92403 0.93700 0.92420 0.89111 0.89160 0.76632 0.77097 0.89111 0.89775 0.91276 0.91881 0.96307 0.96426 0.79166 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.38 71.98 0.60 -3.00 16 2 C -0.09 -2.15 2.72 -10.72 -0.03 -2.18 16 3 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.12 2.66 5.83 86.36 0.50 3.17 16 5 N -0.59 -14.23 2.41 -822.32 -1.98 -16.21 16 6 C 0.56 15.29 6.62 86.79 0.57 15.86 16 7 O -0.56 -18.63 16.52 -3.86 -0.06 -18.69 16 8 C -0.16 -3.62 3.67 -19.82 -0.07 -3.69 16 9 C 0.10 1.82 7.34 22.77 0.17 1.99 16 10 F -0.12 -2.30 16.92 44.97 0.76 -1.54 16 11 C 0.09 1.13 11.16 84.75 0.95 2.07 16 12 N -0.42 -6.15 10.33 -195.62 -2.02 -8.17 16 13 C 0.09 1.22 11.16 84.75 0.95 2.16 16 14 C 0.10 1.91 7.21 22.77 0.16 2.07 16 15 F -0.12 -2.74 16.91 44.97 0.76 -1.98 16 16 C 0.11 2.56 6.34 86.36 0.55 3.11 16 17 C -0.12 -3.35 4.91 30.69 0.15 -3.20 16 18 C -0.08 -2.28 1.96 -10.75 -0.02 -2.30 16 19 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 20 C 0.16 6.07 5.19 86.38 0.45 6.52 16 21 N -0.74 -36.28 5.32 -343.46 -1.83 -38.10 16 22 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 25 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 26 Si 0.97 45.51 29.55 68.60 2.03 47.53 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.23 5.97 -2.39 -0.01 1.22 16 32 H 0.06 1.53 6.58 -2.38 -0.02 1.51 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.18 7.00 -2.39 -0.02 2.17 16 35 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.75 6.23 -2.39 -0.01 1.74 16 39 H 0.07 2.28 7.15 -2.39 -0.02 2.27 16 40 H 0.06 1.87 6.34 -2.39 -0.02 1.85 16 41 H 0.02 0.74 6.74 -2.39 -0.02 0.73 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.38 19.25 6.85 -92.71 -0.63 18.61 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.55 364.28 4.59 -64.96 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.42 Total: 23.10 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.23 Total: 6.43 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.55 Total: -119.81 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 1.52 Total: -3.52 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.55 4.59 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.040 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds