Wall clock time and date at job start Wed Apr 1 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.49300 * 2 1 4 4 C 1.53194 * 109.49702 * 120.09245 * 2 1 3 5 5 N 1.46924 * 108.77457 * 174.58927 * 4 2 1 6 6 C 1.34778 * 120.62956 * 126.36848 * 5 4 2 7 7 O 1.21548 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.47846 * 119.99948 * 179.97438 * 6 5 4 9 9 C 1.40120 * 120.96041 * 89.72333 * 8 6 5 10 10 F 1.35106 * 120.51897 * 0.02562 * 9 8 6 11 11 C 1.38437 * 118.96185 * 179.77887 * 9 8 6 12 12 N 1.31763 * 120.92649 * 0.50340 * 11 9 8 13 13 C 1.31773 * 122.14381 * 359.74707 * 12 11 9 14 14 C 1.38432 * 120.92909 * 359.97438 * 13 12 11 15 15 F 1.35094 * 120.51991 * 179.97438 * 14 13 12 16 16 C 1.46924 * 118.74071 * 306.39413 * 5 4 2 17 17 C 1.53196 * 108.77605 * 53.60689 * 16 5 4 18 18 C 1.53035 * 109.50001 * 239.93265 * 2 1 3 19 19 H 1.08995 * 109.46285 * 298.68946 * 18 2 1 20 20 C 1.53004 * 109.46122 * 58.66130 * 18 2 1 21 21 N 1.46499 * 109.47198 * 184.99969 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47080 * 120.00466 * 26 24 22 29 29 H 1.48506 * 109.47018 * 240.00565 * 26 24 22 30 30 H 1.09002 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47525 * 300.06801 * 1 2 3 32 32 H 1.08994 * 109.47020 * 60.07131 * 1 2 3 33 33 H 1.09005 * 109.58517 * 294.37915 * 4 2 1 34 34 H 1.09001 * 109.58284 * 54.65821 * 4 2 1 35 35 H 1.07992 * 119.53489 * 180.25147 * 11 9 8 36 36 H 1.07994 * 119.53290 * 180.02562 * 13 12 11 37 37 H 1.08994 * 109.59008 * 173.39750 * 16 5 4 38 38 H 1.09005 * 109.58643 * 293.82034 * 16 5 4 39 39 H 1.08999 * 109.49842 * 185.41502 * 17 16 5 40 40 H 1.09000 * 109.49652 * 65.32025 * 17 16 5 41 41 H 1.09009 * 109.46730 * 64.99756 * 20 18 2 42 42 H 1.08998 * 109.46846 * 305.00301 * 20 18 2 43 43 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 44 44 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2811 -0.3859 2.1779 7 8 3.7720 0.1062 3.1658 8 6 5.7522 -0.4992 2.0830 9 6 6.5191 0.5273 1.5161 10 9 5.9264 1.6457 1.0436 11 6 7.8941 0.3798 1.4524 12 7 8.4801 -0.7097 1.9062 13 6 7.7977 -1.7014 2.4421 14 6 6.4192 -1.6386 2.5525 15 9 5.7278 -2.6604 3.1029 16 6 4.1054 -1.4265 -0.0310 17 6 3.5709 -0.6946 -1.2661 18 6 2.0409 -0.7228 -1.2485 19 1 1.6971 -1.7570 -1.2356 20 6 1.5038 -0.0226 -2.4984 21 7 1.8932 -0.7822 -3.6890 22 6 1.5270 -0.3412 -4.9326 23 1 0.9473 0.5642 -5.0354 24 6 1.9010 -1.0578 -6.0611 25 7 2.6072 -2.1615 -5.9357 26 14 1.4009 -0.4566 -7.7575 27 1 0.6169 0.7978 -7.6269 28 1 2.6171 -0.1974 -8.5693 29 1 0.5715 -1.4919 -8.4250 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7637 -0.1584 2.1389 34 1 1.6033 -1.7210 1.2989 35 1 8.4946 1.1670 1.0211 36 1 8.3213 -2.5751 2.8010 37 1 5.1896 -1.3244 0.0135 38 1 3.8377 -2.4817 -0.0873 39 1 3.9335 -1.1890 -2.1673 40 1 3.9160 0.3393 -1.2539 41 1 1.9185 0.9837 -2.5576 42 1 0.4167 0.0350 -2.4437 43 1 2.4142 -1.5952 -3.5966 44 1 2.8682 -2.6624 -6.7243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184486834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:49 Heat of formation + Delta-G solvation = -76.249210 kcal Electronic energy + Delta-G solvation = -30146.404787 eV Core-core repulsion = 25735.101072 eV Total energy + Delta-G solvation = -4411.303715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.61405 -49.55318 -40.96090 -39.94640 -38.16027 -35.15164 -33.88653 -32.85202 -32.04423 -31.29892 -30.38929 -27.31910 -27.00072 -25.18064 -24.10698 -23.71324 -22.64026 -21.51746 -20.53696 -19.59283 -18.67652 -18.63414 -17.97598 -17.19685 -16.97313 -16.42825 -16.30079 -15.98138 -15.87698 -15.23018 -14.87278 -14.73560 -14.45266 -14.22151 -14.03228 -13.96855 -13.70835 -13.60979 -13.42485 -13.09093 -12.71818 -12.57965 -12.53083 -12.02971 -11.92366 -11.71001 -11.04948 -10.98798 -10.87039 -10.85595 -10.47530 -10.40956 -10.36449 -10.24653 -10.02549 -9.94295 -9.67775 -9.51451 -8.91040 -8.82035 -6.93741 -5.80038 -3.07996 0.05973 0.13320 2.01966 2.52826 2.80946 3.04637 3.41010 3.43861 3.47179 3.49008 3.70016 3.79310 4.10266 4.38145 4.55488 4.65201 4.78860 4.84265 4.87715 4.93514 4.99407 5.16893 5.18870 5.31694 5.40864 5.54179 5.60255 5.69346 5.76606 5.81844 5.84393 5.89259 6.00032 6.12186 6.21584 6.24644 6.33038 6.43171 6.53669 6.78130 6.87628 7.02280 7.02551 7.67592 7.68194 8.39376 9.50725 10.08417 10.42962 11.43034 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.003072 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.281667 B = 9111.013056 C =10080.008654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.590 5.590 6 C 0.565 3.435 7 O -0.521 6.521 8 C -0.147 4.147 9 C 0.113 3.887 10 F -0.107 7.107 11 C 0.071 3.929 12 N -0.418 5.418 13 C 0.069 3.931 14 C 0.110 3.890 15 F -0.110 7.110 16 C 0.104 3.896 17 C -0.125 4.125 18 C -0.089 4.089 19 H 0.074 0.926 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.017 0.983 42 H 0.026 0.974 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 1.370 19.038 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.350 3.650 7 O -0.397 6.397 8 C -0.160 4.160 9 C 0.090 3.910 10 F -0.085 7.085 11 C -0.088 4.088 12 N -0.125 5.125 13 C -0.090 4.090 14 C 0.087 3.913 15 F -0.088 7.088 16 C -0.018 4.018 17 C -0.163 4.163 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.202 0.798 36 H 0.201 0.799 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.043 0.957 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.061 1.664 19.370 21.450 hybrid contribution -1.164 0.067 -1.012 1.543 sum 7.898 1.731 18.358 20.060 Atomic orbital electron populations 1.21827 0.94049 1.02316 1.02226 1.21474 0.96373 1.00002 0.93881 0.90699 1.21836 0.77401 1.01497 0.99678 1.48103 1.07484 1.58965 1.17613 1.17659 0.84831 0.78915 0.83567 1.90826 1.73840 1.44264 1.30769 1.20593 0.96446 0.95302 1.03649 1.18643 0.91794 0.83677 0.96840 1.91636 1.83980 1.47865 1.85038 1.23070 0.89714 0.97210 0.98818 1.67666 1.38547 0.99573 1.06721 1.23042 0.88484 0.99195 0.98238 1.18616 0.90927 0.84645 0.97072 1.91608 1.79230 1.55865 1.82129 1.21950 0.97489 0.98064 0.84313 1.21941 0.96326 1.01194 0.96844 1.21350 0.94432 1.00345 0.94674 0.90775 1.20749 0.96741 0.94054 0.85511 1.42380 1.65513 1.28901 1.00836 1.19273 1.27551 1.06276 0.83767 0.91216 1.24716 1.00905 0.97543 0.97800 1.69662 1.42803 1.17418 1.28428 0.86136 0.77659 0.77789 0.84736 1.20581 1.21885 1.21877 0.92394 0.92890 0.91136 0.88917 0.90780 0.79836 0.79929 0.90888 0.90294 0.88915 0.91557 0.96515 0.95674 0.78347 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 2 C -0.10 -1.25 2.41 -90.50 -0.22 -1.46 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.43 5.72 -3.71 -0.02 1.41 16 5 N -0.59 -7.58 2.97 -173.88 -0.52 -8.09 16 6 C 0.57 7.90 6.62 -12.33 -0.08 7.82 16 7 O -0.52 -8.79 16.52 5.32 0.09 -8.70 16 8 C -0.15 -1.70 3.68 -104.55 -0.38 -2.09 16 9 C 0.11 1.17 7.19 -38.80 -0.28 0.90 16 10 F -0.11 -1.26 16.92 2.25 0.04 -1.22 16 11 C 0.07 0.58 11.16 -17.51 -0.20 0.38 16 12 N -0.42 -3.59 10.32 -13.18 -0.14 -3.73 16 13 C 0.07 0.53 11.16 -17.51 -0.20 0.34 16 14 C 0.11 1.08 7.34 -38.80 -0.28 0.79 16 15 F -0.11 -1.16 16.91 2.25 0.04 -1.12 16 16 C 0.10 1.25 6.34 -3.71 -0.02 1.23 16 17 C -0.12 -1.79 5.25 -26.61 -0.14 -1.93 16 18 C -0.09 -1.34 1.73 -90.58 -0.16 -1.49 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 20 C 0.16 3.00 5.41 -4.04 -0.02 2.98 16 21 N -0.73 -17.77 5.32 -59.90 -0.32 -18.09 16 22 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 26 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.89 6.29 -51.93 -0.33 0.57 16 33 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.07 0.80 6.22 -51.93 -0.32 0.48 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 43 H 0.38 9.66 6.84 -40.82 -0.28 9.38 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -32.43 368.25 -7.23 -39.66 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.76 Total: 5.15 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.92 Total: 0.35 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.25 Total: -56.77 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.34 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.43 -7.23 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.586 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds