Wall clock time and date at job start Wed Apr 1 2020 00:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.49300 * 2 1 4 4 C 1.53194 * 109.49702 * 120.09245 * 2 1 3 5 5 N 1.46924 * 108.77457 * 174.58927 * 4 2 1 6 6 C 1.34778 * 120.62956 * 126.36848 * 5 4 2 7 7 O 1.21548 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.47846 * 119.99948 * 179.97438 * 6 5 4 9 9 C 1.40120 * 120.96041 * 89.72333 * 8 6 5 10 10 F 1.35106 * 120.51897 * 0.02562 * 9 8 6 11 11 C 1.38437 * 118.96185 * 179.77887 * 9 8 6 12 12 N 1.31763 * 120.92649 * 0.50340 * 11 9 8 13 13 C 1.31773 * 122.14381 * 359.74707 * 12 11 9 14 14 C 1.38432 * 120.92909 * 359.97438 * 13 12 11 15 15 F 1.35094 * 120.51991 * 179.97438 * 14 13 12 16 16 C 1.46924 * 118.74071 * 306.39413 * 5 4 2 17 17 C 1.53196 * 108.77605 * 53.60689 * 16 5 4 18 18 C 1.53035 * 109.50001 * 239.93265 * 2 1 3 19 19 H 1.08995 * 109.46285 * 298.68946 * 18 2 1 20 20 C 1.53004 * 109.46122 * 58.66130 * 18 2 1 21 21 N 1.46499 * 109.47198 * 184.99969 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47080 * 120.00466 * 26 24 22 29 29 H 1.48506 * 109.47018 * 240.00565 * 26 24 22 30 30 H 1.09002 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47525 * 300.06801 * 1 2 3 32 32 H 1.08994 * 109.47020 * 60.07131 * 1 2 3 33 33 H 1.09005 * 109.58517 * 294.37915 * 4 2 1 34 34 H 1.09001 * 109.58284 * 54.65821 * 4 2 1 35 35 H 1.07992 * 119.53489 * 180.25147 * 11 9 8 36 36 H 1.07994 * 119.53290 * 180.02562 * 13 12 11 37 37 H 1.08994 * 109.59008 * 173.39750 * 16 5 4 38 38 H 1.09005 * 109.58643 * 293.82034 * 16 5 4 39 39 H 1.08999 * 109.49842 * 185.41502 * 17 16 5 40 40 H 1.09000 * 109.49652 * 65.32025 * 17 16 5 41 41 H 1.09009 * 109.46730 * 64.99756 * 20 18 2 42 42 H 1.08998 * 109.46846 * 305.00301 * 20 18 2 43 43 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 44 44 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2811 -0.3859 2.1779 7 8 3.7720 0.1062 3.1658 8 6 5.7522 -0.4992 2.0830 9 6 6.5191 0.5273 1.5161 10 9 5.9264 1.6457 1.0436 11 6 7.8941 0.3798 1.4524 12 7 8.4801 -0.7097 1.9062 13 6 7.7977 -1.7014 2.4421 14 6 6.4192 -1.6386 2.5525 15 9 5.7278 -2.6604 3.1029 16 6 4.1054 -1.4265 -0.0310 17 6 3.5709 -0.6946 -1.2661 18 6 2.0409 -0.7228 -1.2485 19 1 1.6971 -1.7570 -1.2356 20 6 1.5038 -0.0226 -2.4984 21 7 1.8932 -0.7822 -3.6890 22 6 1.5270 -0.3412 -4.9326 23 1 0.9473 0.5642 -5.0354 24 6 1.9010 -1.0578 -6.0611 25 7 2.6072 -2.1615 -5.9357 26 14 1.4009 -0.4566 -7.7575 27 1 0.6169 0.7978 -7.6269 28 1 2.6171 -0.1974 -8.5693 29 1 0.5715 -1.4919 -8.4250 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7637 -0.1584 2.1389 34 1 1.6033 -1.7210 1.2989 35 1 8.4946 1.1670 1.0211 36 1 8.3213 -2.5751 2.8010 37 1 5.1896 -1.3244 0.0135 38 1 3.8377 -2.4817 -0.0873 39 1 3.9335 -1.1890 -2.1673 40 1 3.9160 0.3393 -1.2539 41 1 1.9185 0.9837 -2.5576 42 1 0.4167 0.0350 -2.4437 43 1 2.4142 -1.5952 -3.5966 44 1 2.8682 -2.6624 -6.7243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184486834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:48 Heat of formation + Delta-G solvation = -96.294411 kcal Electronic energy + Delta-G solvation = -30147.274012 eV Core-core repulsion = 25735.101072 eV Total energy + Delta-G solvation = -4412.172940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.39059 -50.36666 -41.89783 -40.81057 -39.35400 -36.67499 -35.24802 -33.89423 -33.33915 -32.09657 -31.97831 -28.56903 -28.19270 -26.24540 -25.32468 -24.81861 -23.90460 -22.84189 -21.63148 -20.71899 -19.47852 -19.40263 -19.20453 -18.81856 -17.97676 -17.20871 -17.20264 -16.87400 -16.68811 -16.66544 -16.25173 -15.82565 -15.61913 -15.53249 -15.27210 -14.96868 -14.88343 -14.60516 -14.43195 -14.32059 -14.10296 -14.00699 -13.36960 -13.21187 -13.01414 -12.96267 -12.88416 -12.74721 -12.16679 -12.05203 -11.91400 -11.85892 -11.70225 -11.51462 -11.27449 -11.15793 -10.95896 -10.86712 -10.19834 -9.93424 -8.96287 -7.94687 -5.22112 -0.71995 -0.54477 0.97732 1.47817 1.48266 1.56235 1.58009 2.12054 2.30270 2.56362 2.71581 2.80056 3.14752 3.39034 3.39886 3.58722 3.63316 3.66304 3.75209 3.86396 4.11483 4.15395 4.16244 4.24773 4.28312 4.44343 4.54443 4.57541 4.59656 4.65413 4.69058 4.77349 4.92798 5.04930 5.06081 5.10772 5.18961 5.19723 5.28304 5.40609 5.49767 5.54146 5.96772 6.28549 6.36032 6.61826 7.35475 8.11192 8.35442 9.28845 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.003072 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.281667 B = 9111.013056 C =10080.008654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.563 3.437 7 O -0.557 6.557 8 C -0.164 4.164 9 C 0.097 3.903 10 F -0.120 7.120 11 C 0.086 3.914 12 N -0.425 5.425 13 C 0.089 3.911 14 C 0.102 3.898 15 F -0.116 7.116 16 C 0.112 3.888 17 C -0.118 4.118 18 C -0.079 4.079 19 H 0.074 0.926 20 C 0.157 3.843 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.269 1.269 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.213 0.787 36 H 0.218 0.782 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.010 0.990 42 H 0.029 0.971 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 1.216 19.632 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.349 3.651 7 O -0.436 6.436 8 C -0.177 4.177 9 C 0.074 3.926 10 F -0.099 7.099 11 C -0.072 4.072 12 N -0.131 5.131 13 C -0.070 4.070 14 C 0.079 3.921 15 F -0.095 7.095 16 C -0.010 4.010 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.194 1.194 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.047 0.953 43 H 0.208 0.792 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.823 1.532 19.973 22.311 hybrid contribution -1.388 0.142 -1.151 1.809 sum 8.435 1.674 18.822 20.693 Atomic orbital electron populations 1.21797 0.92896 1.02873 1.02524 1.21362 0.97260 0.99149 0.92938 0.91636 1.21864 0.77280 1.02239 0.98928 1.48183 1.07771 1.58472 1.17535 1.18029 0.85959 0.78043 0.83076 1.90796 1.74841 1.45886 1.32112 1.20581 0.95150 0.96719 1.05203 1.18834 0.92559 0.83280 0.97905 1.91600 1.84339 1.48530 1.85402 1.23502 0.88847 0.97558 0.97259 1.67812 1.38425 0.99841 1.07062 1.23571 0.87534 0.99664 0.96198 1.18750 0.91601 0.84140 0.97575 1.91592 1.79527 1.56017 1.82322 1.21904 0.98150 0.98180 0.82761 1.21802 0.95866 1.00748 0.97193 1.21232 0.94784 1.00021 0.93731 0.90761 1.20870 0.96912 0.93508 0.85592 1.42547 1.65351 1.29038 1.01506 1.19628 1.26723 1.06033 0.85177 0.91082 1.25467 1.01615 0.98016 1.01238 1.69798 1.44273 1.18618 1.29023 0.85148 0.77130 0.77556 0.80385 1.19355 1.22040 1.22020 0.91713 0.91108 0.92300 0.89219 0.89156 0.77049 0.76561 0.89642 0.88982 0.90989 0.92426 0.97250 0.95303 0.79165 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.82 71.98 0.63 -2.52 16 2 C -0.09 -2.17 2.41 -10.72 -0.03 -2.19 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.12 2.77 5.72 86.36 0.49 3.27 16 5 N -0.59 -14.75 2.97 -822.31 -2.44 -17.19 16 6 C 0.56 15.59 6.62 86.79 0.57 16.17 16 7 O -0.56 -18.98 16.52 -3.87 -0.06 -19.04 16 8 C -0.16 -3.67 3.68 -19.82 -0.07 -3.74 16 9 C 0.10 1.92 7.19 22.77 0.16 2.08 16 10 F -0.12 -2.81 16.92 44.97 0.76 -2.05 16 11 C 0.09 1.23 11.16 84.75 0.95 2.18 16 12 N -0.42 -6.13 10.32 -195.63 -2.02 -8.15 16 13 C 0.09 1.13 11.16 84.75 0.95 2.08 16 14 C 0.10 1.84 7.34 22.77 0.17 2.01 16 15 F -0.12 -2.30 16.91 44.97 0.76 -1.54 16 16 C 0.11 2.60 6.34 86.36 0.55 3.15 16 17 C -0.12 -3.39 5.25 30.67 0.16 -3.22 16 18 C -0.08 -2.34 1.73 -10.77 -0.02 -2.36 16 19 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 20 C 0.16 6.05 5.41 86.38 0.47 6.51 16 21 N -0.74 -36.35 5.32 -343.44 -1.83 -38.18 16 22 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 23 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 26 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.44 6.29 -2.39 -0.02 1.42 16 33 H 0.09 2.22 7.00 -2.38 -0.02 2.21 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.09 1.80 6.22 -2.39 -0.01 1.79 16 38 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.07 2.40 7.15 -2.39 -0.02 2.38 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.03 1.11 6.14 -2.39 -0.01 1.10 16 43 H 0.38 19.28 6.84 -92.71 -0.63 18.65 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -69.88 368.25 4.18 -65.70 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.41 Total: 22.91 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.29 Total: 7.32 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -6.01 Total: -120.86 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.06 Total: -19.04 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.52 Total: -3.59 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.88 4.18 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184486834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.597 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds