Wall clock time and date at job start Wed Apr 1 2020 00:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49212 * 2 1 4 4 C 1.53192 * 109.49579 * 239.93588 * 2 1 3 5 5 N 1.46920 * 108.77835 * 294.68326 * 4 2 1 6 6 C 1.34777 * 120.63285 * 126.36723 * 5 4 2 7 7 O 1.21551 * 120.00048 * 352.15940 * 6 5 4 8 8 C 1.47878 * 119.99992 * 172.42871 * 6 5 4 9 9 N 1.32839 * 119.72555 * 351.87748 * 8 6 5 10 10 C 1.31365 * 121.69442 * 179.70770 * 9 8 6 11 11 C 1.39001 * 120.93012 * 0.56316 * 10 9 8 12 12 F 1.35098 * 120.32800 * 179.70134 * 11 10 9 13 13 C 1.38721 * 119.34341 * 359.72554 * 11 10 9 14 14 C 1.38833 * 118.44740 * 359.97438 * 13 11 10 15 15 F 1.35095 * 120.48889 * 179.97438 * 14 13 11 16 16 C 1.46928 * 118.73808 * 306.64694 * 5 4 2 17 17 C 1.52761 * 109.01062 * 53.30484 * 16 5 4 18 18 C 1.53036 * 109.38452 * 305.59457 * 17 16 5 19 19 H 1.09001 * 109.45640 * 301.21751 * 18 17 16 20 20 C 1.52999 * 109.46003 * 181.25775 * 18 17 16 21 21 N 1.46500 * 109.46900 * 64.93065 * 20 18 17 22 22 C 1.36941 * 119.99613 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00387 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99724 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00235 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00041 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46929 * 89.99858 * 26 24 22 28 28 H 1.48495 * 109.47187 * 209.99759 * 26 24 22 29 29 H 1.48505 * 109.47199 * 330.00157 * 26 24 22 30 30 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47439 * 300.06397 * 1 2 3 32 32 H 1.09004 * 109.47152 * 60.06366 * 1 2 3 33 33 H 1.08999 * 109.58622 * 174.89584 * 4 2 1 34 34 H 1.09002 * 109.70364 * 54.53979 * 4 2 1 35 35 H 1.08002 * 119.53801 * 180.26738 * 10 9 8 36 36 H 1.07992 * 120.77838 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.58862 * 173.14164 * 16 5 4 38 38 H 1.09001 * 109.58215 * 293.56878 * 16 5 4 39 39 H 1.09000 * 109.56486 * 185.55332 * 17 16 5 40 40 H 1.08999 * 109.38351 * 65.51596 * 17 16 5 41 41 H 1.08999 * 109.46931 * 184.92806 * 20 18 17 42 42 H 1.08999 * 109.47299 * 304.92957 * 20 18 17 43 43 H 0.96998 * 120.00515 * 0.02562 * 21 20 18 44 44 H 0.97001 * 120.00304 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9739 -2.7211 -2.1787 7 8 0.5553 -2.0472 -3.0996 8 6 0.7346 -4.1803 -2.1620 9 7 1.3242 -4.9340 -1.2406 10 6 1.1345 -6.2327 -1.1864 11 6 0.3123 -6.8736 -2.1059 12 9 0.1306 -8.2108 -2.0426 13 6 -0.3194 -6.1266 -3.0893 14 6 -0.1052 -4.7552 -3.1181 15 9 -0.6993 -3.9882 -4.0582 16 6 2.0091 -2.9025 0.0323 17 6 1.5030 -2.1562 1.2654 18 6 2.0407 -0.7235 1.2481 19 1 3.1305 -0.7448 1.2350 20 6 1.5606 0.0162 2.4984 21 7 2.1467 -0.6051 3.6886 22 6 1.8586 -0.1091 4.9321 23 1 1.1996 0.7403 5.0353 24 6 2.4135 -0.6982 6.0599 25 7 3.2162 -1.7336 5.9341 26 14 2.0211 -0.0213 7.7561 27 1 0.8181 -0.7047 8.2956 28 1 3.1732 -0.2583 8.6624 29 1 1.7597 1.4374 7.6587 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 3.1274 -0.6459 -1.2982 34 1 1.6027 -0.2731 -2.1403 35 1 1.6282 -6.8114 -0.4197 36 1 -0.9629 -6.6007 -3.8156 37 1 1.5473 -3.8889 -0.0112 38 1 3.0926 -3.0063 0.0905 39 1 1.8481 -2.6635 2.1663 40 1 0.4133 -2.1358 1.2540 41 1 1.8695 1.0601 2.4440 42 1 0.4736 -0.0384 2.5579 43 1 2.7395 -1.3673 3.5959 44 1 3.6037 -2.1455 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184675067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:07 Heat of formation + Delta-G solvation = -55.852432 kcal Electronic energy + Delta-G solvation = -29871.417352 eV Core-core repulsion = 25460.998108 eV Total energy + Delta-G solvation = -4410.419244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.69816 -49.45369 -41.19572 -39.71775 -38.01073 -35.01049 -33.70915 -32.80839 -31.81668 -31.26643 -30.29243 -27.05178 -26.94346 -25.19579 -24.30073 -23.50561 -22.85390 -21.63811 -20.63932 -18.86038 -18.78982 -18.38481 -17.57785 -16.99995 -16.85128 -16.43435 -16.20504 -15.96007 -15.41606 -15.31220 -15.04101 -14.89893 -14.44706 -14.10662 -14.05888 -13.85565 -13.69504 -13.46036 -13.31677 -12.99214 -12.85466 -12.46758 -12.33051 -12.14832 -11.53637 -11.35220 -11.04339 -10.89759 -10.77888 -10.59732 -10.50537 -10.34831 -10.26968 -10.13207 -9.97697 -9.61182 -9.52678 -9.25740 -8.83455 -8.55371 -6.88191 -5.75074 -3.02642 -0.20865 0.21890 2.21413 2.66014 3.09441 3.12858 3.40650 3.44209 3.49625 3.51055 3.54521 3.93906 4.00950 4.36170 4.60376 4.75799 4.90155 5.00358 5.02634 5.06486 5.12701 5.32996 5.40907 5.58377 5.63700 5.72247 5.74569 5.81103 5.86293 5.91960 6.07239 6.14357 6.24439 6.27956 6.39039 6.42785 6.53449 6.58084 6.72276 6.83846 6.87558 6.99325 7.31881 7.71979 7.93412 8.44551 9.55631 10.14679 10.49396 11.47937 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.002840 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.087291 B = 9855.630375 C =11331.680098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.115 3.885 5 N -0.578 5.578 6 C 0.567 3.433 7 O -0.528 6.528 8 C 0.040 3.960 9 N -0.387 5.387 10 C 0.062 3.938 11 C 0.105 3.895 12 F -0.115 7.115 13 C -0.157 4.157 14 C 0.143 3.857 15 F -0.095 7.095 16 C 0.071 3.929 17 C -0.128 4.128 18 C -0.090 4.090 19 H 0.071 0.929 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.187 0.813 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.021 0.979 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -10.218 -20.469 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.309 5.309 6 C 0.352 3.648 7 O -0.405 6.405 8 C -0.098 4.098 9 N -0.097 5.097 10 C -0.099 4.099 11 C 0.083 3.917 12 F -0.093 7.093 13 C -0.184 4.184 14 C 0.120 3.880 15 F -0.073 7.073 16 C -0.051 4.051 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.089 0.911 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.204 0.796 36 H 0.186 0.814 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.637 -9.310 -20.270 22.783 hybrid contribution -0.618 -0.494 0.392 0.883 sum -5.255 -9.804 -19.878 22.778 Atomic orbital electron populations 1.21855 0.94921 1.01905 1.01467 1.21459 0.96651 0.99442 0.94138 0.89971 1.21793 0.99565 0.79856 0.99509 1.47928 1.53644 1.11683 1.17601 1.17491 0.79260 0.84830 0.83176 1.90846 1.50552 1.63022 1.36035 1.21632 0.98159 0.96145 0.93893 1.67970 1.19034 1.05020 1.17720 1.23386 0.96900 0.90853 0.98805 1.18753 0.97796 0.78688 0.96479 1.91601 1.93442 1.28746 1.95506 1.21698 1.03168 0.92316 1.01188 1.18253 0.93381 0.88279 0.88092 1.91669 1.80393 1.74300 1.60944 1.23011 1.01421 0.98076 0.82565 1.21930 1.01083 0.95858 0.97705 1.21329 1.00244 0.94994 0.94333 0.91067 1.20712 0.95859 0.94595 0.85743 1.42382 1.56824 1.37557 1.00831 1.19233 1.22953 1.10705 0.83886 0.91336 1.24712 1.00160 0.98429 0.97744 1.69652 1.35837 1.24354 1.28477 0.86211 0.77227 0.78268 0.84628 1.21793 1.21812 1.20834 0.92750 0.91949 0.93274 0.91138 0.89090 0.79568 0.81409 0.84338 0.91391 0.89446 0.91836 0.96594 0.96159 0.78282 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.38 37.16 0.31 -1.64 16 2 C -0.10 -1.29 2.72 -90.50 -0.25 -1.54 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.11 1.43 5.84 -3.71 -0.02 1.41 16 5 N -0.58 -7.50 2.42 -174.13 -0.42 -7.92 16 6 C 0.57 7.79 7.65 -12.31 -0.09 7.70 16 7 O -0.53 -8.53 14.78 5.32 0.08 -8.45 16 8 C 0.04 0.46 6.60 -82.96 -0.55 -0.09 16 9 N -0.39 -3.78 6.08 -9.70 -0.06 -3.84 16 10 C 0.06 0.44 11.17 -17.47 -0.20 0.24 16 11 C 0.10 0.71 7.35 -39.12 -0.29 0.43 16 12 F -0.11 -0.78 17.28 2.25 0.04 -0.74 16 13 C -0.16 -1.10 10.14 -39.18 -0.40 -1.50 16 14 C 0.14 1.43 7.30 -38.84 -0.28 1.15 16 15 F -0.10 -1.12 15.58 2.25 0.04 -1.09 16 16 C 0.07 0.89 5.87 -3.93 -0.02 0.87 16 17 C -0.13 -1.91 4.89 -26.83 -0.13 -2.04 16 18 C -0.09 -1.41 1.96 -90.58 -0.18 -1.59 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.13 5.19 -4.04 -0.02 3.11 16 21 N -0.73 -18.18 5.32 -59.91 -0.32 -18.50 16 22 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.05 0.78 5.97 -51.93 -0.31 0.47 16 31 H 0.06 0.88 6.59 -51.93 -0.34 0.53 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 35 H 0.19 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.64 3.97 -87.17 -0.35 1.29 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.49 7.15 -51.93 -0.37 1.12 16 40 H 0.06 0.98 6.33 -51.93 -0.33 0.66 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 43 H 0.38 9.89 6.84 -40.82 -0.28 9.61 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -32.18 357.64 -7.54 -39.71 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.62 Total: 5.99 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.36 Total: -0.75 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.07 Total: -57.41 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.07 Total: -1.83 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.18 -7.54 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.137 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds