Wall clock time and date at job start Wed Apr 1 2020 00:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49212 * 2 1 4 4 C 1.53192 * 109.49579 * 239.93588 * 2 1 3 5 5 N 1.46920 * 108.77835 * 294.68326 * 4 2 1 6 6 C 1.34777 * 120.63285 * 126.36723 * 5 4 2 7 7 O 1.21551 * 120.00048 * 352.15940 * 6 5 4 8 8 C 1.47878 * 119.99992 * 172.42871 * 6 5 4 9 9 N 1.32839 * 119.72555 * 351.87748 * 8 6 5 10 10 C 1.31365 * 121.69442 * 179.70770 * 9 8 6 11 11 C 1.39001 * 120.93012 * 0.56316 * 10 9 8 12 12 F 1.35098 * 120.32800 * 179.70134 * 11 10 9 13 13 C 1.38721 * 119.34341 * 359.72554 * 11 10 9 14 14 C 1.38833 * 118.44740 * 359.97438 * 13 11 10 15 15 F 1.35095 * 120.48889 * 179.97438 * 14 13 11 16 16 C 1.46928 * 118.73808 * 306.64694 * 5 4 2 17 17 C 1.52761 * 109.01062 * 53.30484 * 16 5 4 18 18 C 1.53036 * 109.38452 * 305.59457 * 17 16 5 19 19 H 1.09001 * 109.45640 * 301.21751 * 18 17 16 20 20 C 1.52999 * 109.46003 * 181.25775 * 18 17 16 21 21 N 1.46500 * 109.46900 * 64.93065 * 20 18 17 22 22 C 1.36941 * 119.99613 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00387 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99724 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00235 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00041 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46929 * 89.99858 * 26 24 22 28 28 H 1.48495 * 109.47187 * 209.99759 * 26 24 22 29 29 H 1.48505 * 109.47199 * 330.00157 * 26 24 22 30 30 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47439 * 300.06397 * 1 2 3 32 32 H 1.09004 * 109.47152 * 60.06366 * 1 2 3 33 33 H 1.08999 * 109.58622 * 174.89584 * 4 2 1 34 34 H 1.09002 * 109.70364 * 54.53979 * 4 2 1 35 35 H 1.08002 * 119.53801 * 180.26738 * 10 9 8 36 36 H 1.07992 * 120.77838 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.58862 * 173.14164 * 16 5 4 38 38 H 1.09001 * 109.58215 * 293.56878 * 16 5 4 39 39 H 1.09000 * 109.56486 * 185.55332 * 17 16 5 40 40 H 1.08999 * 109.38351 * 65.51596 * 17 16 5 41 41 H 1.08999 * 109.46931 * 184.92806 * 20 18 17 42 42 H 1.08999 * 109.47299 * 304.92957 * 20 18 17 43 43 H 0.96998 * 120.00515 * 0.02562 * 21 20 18 44 44 H 0.97001 * 120.00304 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9739 -2.7211 -2.1787 7 8 0.5553 -2.0472 -3.0996 8 6 0.7346 -4.1803 -2.1620 9 7 1.3242 -4.9340 -1.2406 10 6 1.1345 -6.2327 -1.1864 11 6 0.3123 -6.8736 -2.1059 12 9 0.1306 -8.2108 -2.0426 13 6 -0.3194 -6.1266 -3.0893 14 6 -0.1052 -4.7552 -3.1181 15 9 -0.6993 -3.9882 -4.0582 16 6 2.0091 -2.9025 0.0323 17 6 1.5030 -2.1562 1.2654 18 6 2.0407 -0.7235 1.2481 19 1 3.1305 -0.7448 1.2350 20 6 1.5606 0.0162 2.4984 21 7 2.1467 -0.6051 3.6886 22 6 1.8586 -0.1091 4.9321 23 1 1.1996 0.7403 5.0353 24 6 2.4135 -0.6982 6.0599 25 7 3.2162 -1.7336 5.9341 26 14 2.0211 -0.0213 7.7561 27 1 0.8181 -0.7047 8.2956 28 1 3.1732 -0.2583 8.6624 29 1 1.7597 1.4374 7.6587 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 3.1274 -0.6459 -1.2982 34 1 1.6027 -0.2731 -2.1403 35 1 1.6282 -6.8114 -0.4197 36 1 -0.9629 -6.6007 -3.8156 37 1 1.5473 -3.8889 -0.0112 38 1 3.0926 -3.0063 0.0905 39 1 1.8481 -2.6635 2.1663 40 1 0.4133 -2.1358 1.2540 41 1 1.8695 1.0601 2.4440 42 1 0.4736 -0.0384 2.5579 43 1 2.7395 -1.3673 3.5959 44 1 3.6037 -2.1455 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184675067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:06 Heat of formation + Delta-G solvation = -74.704737 kcal Electronic energy + Delta-G solvation = -29872.234849 eV Core-core repulsion = 25460.998108 eV Total energy + Delta-G solvation = -4411.236742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.27352 -50.24287 -42.06878 -40.64332 -39.18350 -36.58487 -35.01756 -33.76430 -33.11442 -32.07974 -31.95241 -28.50039 -28.06286 -26.13987 -25.35577 -24.87045 -24.03600 -22.98604 -21.73986 -19.85414 -19.56295 -19.36193 -18.92930 -18.38066 -17.59034 -17.25611 -17.10753 -16.80602 -16.63850 -16.36275 -16.08866 -15.86910 -15.58218 -15.47471 -15.33271 -14.98054 -14.85724 -14.73824 -14.43366 -14.17370 -13.87955 -13.65346 -13.58809 -13.39874 -12.95785 -12.80030 -12.68175 -12.44071 -12.19165 -12.02607 -11.89368 -11.65936 -11.47866 -11.45425 -11.21591 -11.12327 -10.89669 -10.25048 -10.18643 -9.61879 -8.94260 -7.92330 -5.19861 -0.92703 -0.39754 1.37842 1.48612 1.49620 1.58059 1.74984 2.29745 2.42606 2.57911 2.72677 2.79300 3.25279 3.36893 3.40969 3.69097 3.74230 3.83132 3.87739 4.13466 4.18335 4.26586 4.31989 4.36698 4.50946 4.54992 4.59935 4.67965 4.72836 4.80366 4.85715 5.00141 5.02778 5.10666 5.20505 5.20630 5.23447 5.30111 5.42832 5.51450 5.56931 5.68680 6.12773 6.30489 6.31492 6.91807 7.37261 8.14023 8.38475 9.30984 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.002840 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.087291 B = 9855.630375 C =11331.680098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.094 0.906 4 C 0.116 3.884 5 N -0.578 5.578 6 C 0.563 3.437 7 O -0.559 6.559 8 C 0.019 3.981 9 N -0.402 5.402 10 C 0.072 3.928 11 C 0.119 3.881 12 F -0.108 7.108 13 C -0.140 4.140 14 C 0.130 3.870 15 F -0.111 7.111 16 C 0.080 3.920 17 C -0.120 4.120 18 C -0.080 4.080 19 H 0.068 0.932 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.970 3.030 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.273 1.273 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.217 0.783 36 H 0.196 0.804 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -11.276 -20.962 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.006 4.006 5 N -0.309 5.309 6 C 0.350 3.650 7 O -0.439 6.439 8 C -0.118 4.118 9 N -0.112 5.112 10 C -0.090 4.090 11 C 0.096 3.904 12 F -0.087 7.087 13 C -0.167 4.167 14 C 0.107 3.893 15 F -0.089 7.089 16 C -0.041 4.041 17 C -0.158 4.158 18 C -0.099 4.099 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.384 5.384 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.799 3.201 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.198 1.198 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.213 0.787 37 H 0.169 0.831 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.964 -10.340 -20.785 23.740 hybrid contribution -0.554 -0.253 0.514 0.797 sum -5.518 -10.593 -20.271 23.528 Atomic orbital electron populations 1.21793 0.95091 1.01225 1.01503 1.21402 0.96370 0.99915 0.93212 0.88750 1.21802 1.00386 0.79697 0.98714 1.47972 1.53472 1.11850 1.17564 1.17857 0.78519 0.85966 0.82651 1.90816 1.51797 1.64134 1.37106 1.21311 0.99903 0.95075 0.95484 1.67780 1.19486 1.06181 1.17789 1.23848 0.96155 0.89999 0.98996 1.18687 0.97011 0.78748 0.95909 1.91630 1.93283 1.28357 1.95394 1.21904 1.02555 0.90908 1.01306 1.18389 0.93789 0.89243 0.87899 1.91628 1.80765 1.74954 1.61529 1.22986 1.01720 0.98231 0.81205 1.21803 1.00489 0.95490 0.98006 1.21214 0.99968 0.95232 0.93478 0.91360 1.20831 0.95354 0.94653 0.85862 1.42555 1.56865 1.37501 1.01526 1.19598 1.22355 1.10475 0.85278 0.91170 1.25487 1.00614 0.99082 1.01278 1.69795 1.37086 1.25657 1.29107 0.85200 0.76720 0.78053 0.80146 1.21455 1.22082 1.19773 0.93783 0.92703 0.92358 0.89706 0.89238 0.76701 0.78685 0.83113 0.90847 0.91761 0.92591 0.96733 0.96457 0.79139 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.38 71.98 0.60 -3.11 16 2 C -0.09 -2.30 2.72 -10.72 -0.03 -2.33 16 3 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.12 2.79 5.84 86.36 0.50 3.30 16 5 N -0.58 -14.73 2.42 -823.11 -1.99 -16.72 16 6 C 0.56 15.40 7.65 86.80 0.66 16.06 16 7 O -0.56 -18.27 14.78 -3.88 -0.06 -18.32 16 8 C 0.02 0.42 6.60 41.88 0.28 0.69 16 9 N -0.40 -7.24 6.08 -184.61 -1.12 -8.36 16 10 C 0.07 0.84 11.17 84.95 0.95 1.78 16 11 C 0.12 1.26 7.35 22.57 0.17 1.43 16 12 F -0.11 -1.11 17.28 44.97 0.78 -0.33 16 13 C -0.14 -1.63 10.14 22.53 0.23 -1.40 16 14 C 0.13 2.47 7.30 22.75 0.17 2.64 16 15 F -0.11 -2.60 15.58 44.97 0.70 -1.90 16 16 C 0.08 1.97 5.87 86.22 0.51 2.48 16 17 C -0.12 -3.60 4.89 30.53 0.15 -3.45 16 18 C -0.08 -2.49 1.96 -10.77 -0.02 -2.51 16 19 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.16 6.33 5.19 86.38 0.45 6.78 16 21 N -0.74 -37.29 5.32 -343.45 -1.83 -39.12 16 22 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 25 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 26 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 30 H 0.04 1.26 5.97 -2.39 -0.01 1.24 16 31 H 0.05 1.53 6.59 -2.39 -0.02 1.51 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.24 7.00 -2.39 -0.02 2.22 16 35 H 0.22 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.15 3.43 3.97 -71.97 -0.29 3.14 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 2.25 7.15 -2.39 -0.02 2.23 16 40 H 0.06 1.75 6.33 -2.39 -0.02 1.74 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.02 0.71 6.74 -2.39 -0.02 0.70 16 43 H 0.38 19.80 6.84 -92.71 -0.63 19.17 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -69.49 357.64 4.86 -64.63 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.15 Total: 24.16 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.92 Total: 5.83 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.65 Total: -122.10 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.32 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 1.48 Total: -2.23 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.49 4.86 -64.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.077 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds