Wall clock time and date at job start Wed Apr 1 2020 00:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.52377 * 2 1 4 4 C 1.53189 * 109.49917 * 239.91906 * 2 1 3 5 5 N 1.46927 * 108.77350 * 185.41349 * 4 2 1 6 6 C 1.34785 * 120.63009 * 233.62905 * 5 4 2 7 7 O 1.21550 * 119.99447 * 356.26462 * 6 5 4 8 8 C 1.47880 * 119.99947 * 176.26325 * 6 5 4 9 9 N 1.32844 * 119.72179 * 40.08221 * 8 6 5 10 10 C 1.31365 * 121.68915 * 179.97438 * 9 8 6 11 11 C 1.39003 * 120.93260 * 359.97438 * 10 9 8 12 12 F 1.35104 * 120.33142 * 180.02562 * 11 10 9 13 13 C 1.38717 * 119.34161 * 0.02569 * 11 10 9 14 14 C 1.38836 * 118.44795 * 359.72263 * 13 11 10 15 15 F 1.35101 * 120.48501 * 180.28980 * 14 13 11 16 16 C 1.46930 * 118.74265 * 53.60554 * 5 4 2 17 17 C 1.53189 * 108.77370 * 306.39208 * 16 5 4 18 18 C 1.53043 * 109.31225 * 54.63687 * 17 16 5 19 19 H 1.08996 * 109.46557 * 58.63837 * 18 17 16 20 20 C 1.53007 * 109.45813 * 178.61385 * 18 17 16 21 21 N 1.46499 * 109.46931 * 294.99550 * 20 18 17 22 22 C 1.36937 * 119.99888 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99617 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99747 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99506 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00319 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47211 * 270.00404 * 26 24 22 28 28 H 1.48495 * 109.46967 * 30.00127 * 26 24 22 29 29 H 1.48497 * 109.46973 * 150.00334 * 26 24 22 30 30 H 1.09006 * 109.47319 * 299.91685 * 1 2 3 31 31 H 1.08998 * 109.47211 * 59.92381 * 1 2 3 32 32 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58573 * 65.62502 * 4 2 1 34 34 H 1.09001 * 109.58354 * 305.19804 * 4 2 1 35 35 H 1.08000 * 119.53129 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.77513 * 180.02562 * 13 11 10 37 37 H 1.09003 * 109.58833 * 186.60059 * 16 5 4 38 38 H 1.09001 * 109.69944 * 66.24833 * 16 5 4 39 39 H 1.08993 * 109.50073 * 294.68089 * 17 16 5 40 40 H 1.09002 * 109.51950 * 174.59511 * 17 16 5 41 41 H 1.09004 * 109.46850 * 174.99907 * 20 18 17 42 42 H 1.08997 * 109.46855 * 55.00033 * 20 18 17 43 43 H 0.96999 * 119.99909 * 0.02562 * 21 20 18 44 44 H 0.97005 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3855 -2.1778 7 8 3.7710 0.0447 -3.1937 8 6 5.7539 -0.4223 -2.0481 9 7 6.3387 -1.4692 -1.4765 10 6 7.6434 -1.5423 -1.3417 11 6 8.4672 -0.5191 -1.7963 12 9 9.8076 -0.6073 -1.6519 13 6 7.8994 0.5934 -2.3997 14 6 6.5182 0.6407 -2.5332 15 9 5.9223 1.7019 -3.1197 16 6 4.1053 -1.4265 0.0309 17 6 3.5708 -0.6948 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6967 -1.7572 1.2352 20 6 1.5036 -0.0231 2.4985 21 7 1.8917 -0.7838 3.6888 22 6 1.5199 -0.3465 4.9321 23 1 0.9410 0.5594 5.0351 24 6 1.8880 -1.0671 6.0600 25 7 1.5303 -0.6470 7.2549 26 14 2.8899 -2.6336 5.8818 27 1 1.9737 -3.7942 5.7440 28 1 3.7504 -2.5363 4.6755 29 1 3.7420 -2.8157 7.0843 30 1 -0.3634 0.5126 0.8908 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7637 -0.1579 -2.1388 34 1 1.6052 -1.7216 -1.2979 35 1 8.0822 -2.4101 -0.8718 36 1 8.5175 1.4016 -2.7617 37 1 5.1897 -1.3245 -0.0136 38 1 3.8398 -2.4822 0.0881 39 1 3.9158 0.3390 1.2542 40 1 3.9334 -1.1891 2.1675 41 1 0.4166 0.0356 2.4432 42 1 1.9192 0.9827 2.5585 43 1 2.4119 -1.5973 3.5963 44 1 1.7879 -1.1503 8.0432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184675068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:14 Heat of formation + Delta-G solvation = -64.502481 kcal Electronic energy + Delta-G solvation = -29786.214714 eV Core-core repulsion = 25375.420376 eV Total energy + Delta-G solvation = -4410.794339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.73591 -49.56816 -41.21056 -39.76192 -38.12625 -35.23563 -33.85931 -32.98184 -32.09441 -31.50796 -30.70719 -27.29759 -27.06536 -25.27512 -24.34431 -23.49398 -22.52482 -21.38498 -20.64926 -19.64752 -18.84822 -18.75130 -17.81796 -17.51842 -16.97606 -16.51608 -16.39743 -15.93486 -15.57314 -15.35541 -14.97524 -14.88829 -14.57860 -14.28173 -14.17859 -13.95493 -13.76118 -13.42497 -13.31985 -13.08270 -12.90801 -12.83316 -12.44262 -12.00366 -11.91850 -11.70840 -11.35109 -10.99267 -10.92652 -10.84215 -10.58979 -10.53024 -10.43714 -10.17663 -10.13779 -9.82666 -9.59167 -9.56128 -8.90268 -8.74837 -7.22447 -5.77685 -3.12796 -0.20566 0.17521 2.12094 2.50549 2.83302 3.05046 3.33525 3.34001 3.37194 3.43258 3.57678 3.88920 3.92183 4.32052 4.57448 4.66413 4.76212 4.79639 4.85556 4.92379 5.02072 5.07738 5.24438 5.37298 5.46606 5.52457 5.59788 5.68080 5.71414 5.73602 5.77677 5.86774 5.90918 6.10811 6.15978 6.20482 6.31696 6.37385 6.43458 6.72734 6.80200 6.81012 7.11116 7.77551 7.99213 8.41538 9.20877 9.93172 10.13279 11.40979 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.003271 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.007679 B = 8558.066505 C =10236.674036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.585 5.585 6 C 0.573 3.427 7 O -0.525 6.525 8 C 0.045 3.955 9 N -0.395 5.395 10 C 0.064 3.936 11 C 0.103 3.897 12 F -0.114 7.114 13 C -0.154 4.154 14 C 0.137 3.863 15 F -0.101 7.101 16 C 0.098 3.902 17 C -0.131 4.131 18 C -0.094 4.094 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.186 0.814 36 H 0.169 0.831 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 -0.811 -22.487 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.005 4.005 5 N -0.316 5.316 6 C 0.359 3.641 7 O -0.401 6.401 8 C -0.094 4.094 9 N -0.105 5.105 10 C -0.097 4.097 11 C 0.081 3.919 12 F -0.093 7.093 13 C -0.181 4.181 14 C 0.115 3.885 15 F -0.079 7.079 16 C -0.024 4.024 17 C -0.169 4.169 18 C -0.113 4.113 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.218 1.218 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.203 0.797 36 H 0.187 0.813 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.694 -1.070 -22.571 25.443 hybrid contribution 1.590 -0.290 -0.160 1.624 sum 13.284 -1.360 -22.731 26.364 Atomic orbital electron populations 1.21836 0.93993 1.02331 1.02351 1.21459 0.96406 0.99986 0.93804 0.90653 1.21832 0.77740 1.01411 0.99489 1.47964 1.07099 1.58509 1.17979 1.17507 0.84308 0.78520 0.83815 1.90843 1.73569 1.46952 1.28702 1.21441 0.95899 0.91693 1.00385 1.67943 1.11052 1.21857 1.09632 1.23202 0.88298 0.98828 0.99388 1.18736 0.78831 0.95486 0.98833 1.91603 1.28494 1.96039 1.93116 1.21678 0.93771 1.00331 1.02276 1.18231 0.90132 0.85436 0.94748 1.91650 1.83405 1.52588 1.80250 1.22269 0.99631 0.97369 0.83148 1.22016 0.96168 1.01328 0.97367 1.21418 0.94681 1.00323 0.94880 0.90853 1.20739 0.97254 0.94069 0.84564 1.42727 1.66107 1.28647 1.02622 1.19068 1.28313 1.07921 0.81947 0.89299 1.24673 1.00743 0.98711 0.95110 1.69705 1.50957 1.40618 0.97057 0.86550 0.80435 0.84730 0.76796 1.21085 1.20367 1.21777 0.91078 0.92787 0.92407 0.88877 0.90883 0.79699 0.81304 0.88051 0.90643 0.91635 0.89799 0.94882 0.95775 0.80740 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 2 C -0.10 -1.18 2.41 -90.50 -0.22 -1.40 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.36 5.71 -3.71 -0.02 1.34 16 5 N -0.58 -7.23 2.97 -173.86 -0.52 -7.75 16 6 C 0.57 7.70 7.32 -12.31 -0.09 7.61 16 7 O -0.52 -8.38 15.67 5.32 0.08 -8.30 16 8 C 0.04 0.50 6.01 -82.96 -0.50 0.00 16 9 N -0.39 -3.79 7.27 -9.70 -0.07 -3.86 16 10 C 0.06 0.45 11.17 -17.47 -0.20 0.25 16 11 C 0.10 0.70 7.35 -39.12 -0.29 0.41 16 12 F -0.11 -0.77 17.28 2.25 0.04 -0.73 16 13 C -0.15 -1.09 10.14 -39.18 -0.40 -1.49 16 14 C 0.14 1.37 7.27 -38.84 -0.28 1.09 16 15 F -0.10 -1.17 16.24 2.25 0.04 -1.13 16 16 C 0.10 1.14 6.02 -3.71 -0.02 1.12 16 17 C -0.13 -1.79 5.25 -26.61 -0.14 -1.93 16 18 C -0.09 -1.34 1.73 -90.57 -0.16 -1.50 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.16 2.97 5.41 -4.04 -0.02 2.95 16 21 N -0.76 -17.39 5.12 -59.91 -0.31 -17.70 16 22 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.94 -29.25 13.97 55.49 0.78 -28.47 16 26 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H 0.07 0.87 6.29 -51.93 -0.33 0.55 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.13 7.02 -51.93 -0.36 0.76 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.10 1.12 4.57 -51.93 -0.24 0.88 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.28 7.15 -51.93 -0.37 0.90 16 41 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.36 8.01 4.71 -40.82 -0.19 7.81 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -33.20 361.08 -7.12 -40.32 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.63 Total: 5.02 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.26 Total: 0.20 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.12 Total: -57.77 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.08 Total: -1.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.20 -7.12 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.183 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds