Wall clock time and date at job start Wed Apr 1 2020 00:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.52377 * 2 1 4 4 C 1.53189 * 109.49917 * 239.91906 * 2 1 3 5 5 N 1.46927 * 108.77350 * 185.41349 * 4 2 1 6 6 C 1.34785 * 120.63009 * 233.62905 * 5 4 2 7 7 O 1.21550 * 119.99447 * 356.26462 * 6 5 4 8 8 C 1.47880 * 119.99947 * 176.26325 * 6 5 4 9 9 N 1.32844 * 119.72179 * 40.08221 * 8 6 5 10 10 C 1.31365 * 121.68915 * 179.97438 * 9 8 6 11 11 C 1.39003 * 120.93260 * 359.97438 * 10 9 8 12 12 F 1.35104 * 120.33142 * 180.02562 * 11 10 9 13 13 C 1.38717 * 119.34161 * 0.02569 * 11 10 9 14 14 C 1.38836 * 118.44795 * 359.72263 * 13 11 10 15 15 F 1.35101 * 120.48501 * 180.28980 * 14 13 11 16 16 C 1.46930 * 118.74265 * 53.60554 * 5 4 2 17 17 C 1.53189 * 108.77370 * 306.39208 * 16 5 4 18 18 C 1.53043 * 109.31225 * 54.63687 * 17 16 5 19 19 H 1.08996 * 109.46557 * 58.63837 * 18 17 16 20 20 C 1.53007 * 109.45813 * 178.61385 * 18 17 16 21 21 N 1.46499 * 109.46931 * 294.99550 * 20 18 17 22 22 C 1.36937 * 119.99888 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99617 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99747 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99506 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00319 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47211 * 270.00404 * 26 24 22 28 28 H 1.48495 * 109.46967 * 30.00127 * 26 24 22 29 29 H 1.48497 * 109.46973 * 150.00334 * 26 24 22 30 30 H 1.09006 * 109.47319 * 299.91685 * 1 2 3 31 31 H 1.08998 * 109.47211 * 59.92381 * 1 2 3 32 32 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58573 * 65.62502 * 4 2 1 34 34 H 1.09001 * 109.58354 * 305.19804 * 4 2 1 35 35 H 1.08000 * 119.53129 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.77513 * 180.02562 * 13 11 10 37 37 H 1.09003 * 109.58833 * 186.60059 * 16 5 4 38 38 H 1.09001 * 109.69944 * 66.24833 * 16 5 4 39 39 H 1.08993 * 109.50073 * 294.68089 * 17 16 5 40 40 H 1.09002 * 109.51950 * 174.59511 * 17 16 5 41 41 H 1.09004 * 109.46850 * 174.99907 * 20 18 17 42 42 H 1.08997 * 109.46855 * 55.00033 * 20 18 17 43 43 H 0.96999 * 119.99909 * 0.02562 * 21 20 18 44 44 H 0.97005 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3855 -2.1778 7 8 3.7710 0.0447 -3.1937 8 6 5.7539 -0.4223 -2.0481 9 7 6.3387 -1.4692 -1.4765 10 6 7.6434 -1.5423 -1.3417 11 6 8.4672 -0.5191 -1.7963 12 9 9.8076 -0.6073 -1.6519 13 6 7.8994 0.5934 -2.3997 14 6 6.5182 0.6407 -2.5332 15 9 5.9223 1.7019 -3.1197 16 6 4.1053 -1.4265 0.0309 17 6 3.5708 -0.6948 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6967 -1.7572 1.2352 20 6 1.5036 -0.0231 2.4985 21 7 1.8917 -0.7838 3.6888 22 6 1.5199 -0.3465 4.9321 23 1 0.9410 0.5594 5.0351 24 6 1.8880 -1.0671 6.0600 25 7 1.5303 -0.6470 7.2549 26 14 2.8899 -2.6336 5.8818 27 1 1.9737 -3.7942 5.7440 28 1 3.7504 -2.5363 4.6755 29 1 3.7420 -2.8157 7.0843 30 1 -0.3634 0.5126 0.8908 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7637 -0.1579 -2.1388 34 1 1.6052 -1.7216 -1.2979 35 1 8.0822 -2.4101 -0.8718 36 1 8.5175 1.4016 -2.7617 37 1 5.1897 -1.3245 -0.0136 38 1 3.8398 -2.4822 0.0881 39 1 3.9158 0.3390 1.2542 40 1 3.9334 -1.1891 2.1675 41 1 0.4166 0.0356 2.4432 42 1 1.9192 0.9827 2.5585 43 1 2.4119 -1.5973 3.5963 44 1 1.7879 -1.1503 8.0432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184675068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:13 Heat of formation + Delta-G solvation = -85.413759 kcal Electronic energy + Delta-G solvation = -29787.121495 eV Core-core repulsion = 25375.420376 eV Total energy + Delta-G solvation = -4411.701120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.34536 -50.27683 -42.02898 -40.62289 -39.24452 -36.74381 -35.14929 -33.81445 -33.49462 -32.37758 -32.20115 -28.71911 -27.97891 -26.14579 -25.22928 -24.78966 -23.74569 -22.73756 -21.71070 -20.72923 -19.66783 -19.48287 -19.39939 -18.56783 -17.76147 -17.25832 -17.14610 -16.70704 -16.61948 -16.35385 -16.27237 -15.93371 -15.64176 -15.61525 -15.23425 -14.89314 -14.80938 -14.63987 -14.46725 -14.30167 -14.01368 -13.87246 -13.64997 -13.26817 -13.14143 -12.91493 -12.81027 -12.65428 -12.16838 -11.98870 -11.84164 -11.66910 -11.64544 -11.62827 -11.26164 -11.13795 -10.96872 -10.69562 -10.25503 -9.75297 -9.25873 -8.00908 -5.34422 -0.88588 -0.41638 1.26106 1.38998 1.44287 1.51511 1.64531 2.12700 2.39777 2.50893 2.68915 2.81887 3.23763 3.30579 3.35729 3.52272 3.67523 3.75671 3.80708 3.96040 4.04186 4.14288 4.24732 4.30290 4.40600 4.48492 4.56789 4.61492 4.66922 4.72793 4.78636 4.88504 4.98280 5.06713 5.08743 5.14745 5.21079 5.23593 5.34332 5.44903 5.56136 5.77591 6.10756 6.19764 6.22928 6.81133 7.10293 7.86014 8.06827 9.20957 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.003271 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.007679 B = 8558.066505 C =10236.674036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.585 5.585 6 C 0.568 3.432 7 O -0.560 6.560 8 C 0.024 3.976 9 N -0.406 5.406 10 C 0.076 3.924 11 C 0.114 3.886 12 F -0.109 7.109 13 C -0.141 4.141 14 C 0.120 3.880 15 F -0.117 7.117 16 C 0.106 3.894 17 C -0.127 4.127 18 C -0.084 4.084 19 H 0.082 0.918 20 C 0.159 3.841 21 N -0.754 5.754 22 C -0.236 4.236 23 H 0.051 0.949 24 C -0.066 4.066 25 N -0.987 5.987 26 Si 0.957 3.043 27 H -0.277 1.277 28 H -0.243 1.243 29 H -0.297 1.297 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.219 0.781 36 H 0.194 0.806 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.013 0.987 43 H 0.367 0.633 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.873 -2.855 -24.085 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.355 3.645 7 O -0.439 6.439 8 C -0.113 4.113 9 N -0.117 5.117 10 C -0.086 4.086 11 C 0.092 3.908 12 F -0.087 7.087 13 C -0.167 4.167 14 C 0.097 3.903 15 F -0.095 7.095 16 C -0.016 4.016 17 C -0.165 4.165 18 C -0.103 4.103 19 H 0.100 0.900 20 C 0.033 3.967 21 N -0.400 5.400 22 C -0.367 4.367 23 H 0.069 0.931 24 C -0.257 4.257 25 N -0.638 5.638 26 Si 0.783 3.217 27 H -0.204 1.204 28 H -0.168 1.168 29 H -0.224 1.224 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.212 0.788 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.201 0.799 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.933 -3.106 -24.218 28.112 hybrid contribution 0.919 0.439 0.343 1.075 sum 14.852 -2.667 -23.875 28.243 Atomic orbital electron populations 1.21808 0.93115 1.02942 1.02379 1.21355 0.97074 0.99202 0.93121 0.91716 1.21831 0.77685 1.02107 0.98614 1.48051 1.07327 1.58153 1.17968 1.17880 0.85465 0.77743 0.83404 1.90811 1.74553 1.48493 1.30000 1.21171 0.94830 0.93001 1.02324 1.67906 1.12300 1.21297 1.10190 1.23739 0.87357 0.99552 0.97982 1.18708 0.78931 0.95139 0.98008 1.91630 1.28161 1.95962 1.92943 1.21887 0.92649 1.01059 1.01115 1.18400 0.91149 0.85118 0.95595 1.91607 1.83874 1.53296 1.80744 1.22264 1.00170 0.97547 0.81628 1.21951 0.95491 1.01020 0.98054 1.21320 0.95205 1.00351 0.93405 0.89963 1.20873 0.97275 0.93580 0.84952 1.42679 1.66039 1.29202 1.02110 1.19030 1.26992 1.06450 0.84206 0.93076 1.25560 1.02696 1.02943 0.94516 1.69905 1.53082 1.42661 0.98113 0.85387 0.78965 0.79586 0.77754 1.20356 1.16756 1.22404 0.92580 0.91235 0.91498 0.89357 0.89208 0.76467 0.78841 0.87052 0.89216 0.92596 0.90833 0.94983 0.96943 0.79883 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.82 71.98 0.63 -2.42 16 2 C -0.09 -2.04 2.41 -10.72 -0.03 -2.06 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.60 5.71 86.36 0.49 3.09 16 5 N -0.58 -13.65 2.97 -822.26 -2.44 -16.09 16 6 C 0.57 14.93 7.32 86.80 0.64 15.57 16 7 O -0.56 -18.01 15.67 -3.87 -0.06 -18.07 16 8 C 0.02 0.51 6.01 41.88 0.25 0.76 16 9 N -0.41 -6.80 7.27 -184.61 -1.34 -8.14 16 10 C 0.08 0.79 11.17 84.95 0.95 1.74 16 11 C 0.11 1.17 7.35 22.57 0.17 1.34 16 12 F -0.11 -1.07 17.28 44.97 0.78 -0.30 16 13 C -0.14 -1.65 10.14 22.53 0.23 -1.43 16 14 C 0.12 2.28 7.27 22.75 0.17 2.44 16 15 F -0.12 -2.71 16.24 44.97 0.73 -1.98 16 16 C 0.11 2.22 6.02 86.36 0.52 2.74 16 17 C -0.13 -3.25 5.25 30.67 0.16 -3.09 16 18 C -0.08 -2.27 1.73 -10.76 -0.02 -2.29 16 19 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 20 C 0.16 5.85 5.41 86.38 0.47 6.31 16 21 N -0.75 -34.21 5.12 -343.44 -1.76 -35.96 16 22 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 25 N -0.99 -63.28 13.97 21.65 0.30 -62.98 16 26 Si 0.96 44.11 27.74 68.60 1.90 46.01 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.24 -9.75 6.52 99.48 0.65 -9.10 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H 0.06 1.35 6.29 -2.38 -0.02 1.34 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.11 2.17 4.57 -2.39 -0.01 2.16 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 2.06 7.15 -2.39 -0.02 2.04 16 41 H 0.03 1.21 6.14 -2.39 -0.01 1.19 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.37 15.51 4.71 -92.71 -0.44 15.08 16 44 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -74.06 361.08 4.64 -69.42 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.55 Total: 21.33 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.97 Total: 6.76 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.24 Total: -123.17 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.06 Total: -18.07 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 1.51 Total: -2.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -74.06 4.64 -69.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.991 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds