Wall clock time and date at job start Wed Apr 1 2020 00:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52440 * 2 1 4 4 C 1.53193 * 109.49904 * 120.08068 * 2 1 3 5 5 N 1.46924 * 108.77771 * 65.31596 * 4 2 1 6 6 C 1.34774 * 120.63071 * 233.63585 * 5 4 2 7 7 O 1.21551 * 119.99674 * 172.14200 * 6 5 4 8 8 C 1.47873 * 120.00032 * 352.14072 * 6 5 4 9 9 N 1.32848 * 119.72311 * 352.14993 * 8 6 5 10 10 C 1.31369 * 121.68793 * 179.70972 * 9 8 6 11 11 C 1.39002 * 120.93288 * 0.57135 * 10 9 8 12 12 F 1.35101 * 120.32628 * 179.74432 * 11 10 9 13 13 C 1.38728 * 119.34248 * 359.72083 * 11 10 9 14 14 C 1.38828 * 118.44562 * 0.02562 * 13 11 10 15 15 F 1.35101 * 120.48052 * 179.97438 * 14 13 11 16 16 C 1.46925 * 118.73705 * 53.60580 * 5 4 2 17 17 C 1.53194 * 108.77771 * 306.39735 * 16 5 4 18 18 C 1.53038 * 109.31513 * 54.63178 * 17 16 5 19 19 H 1.09003 * 109.45667 * 58.65375 * 18 17 16 20 20 C 1.52999 * 109.45159 * 178.62157 * 18 17 16 21 21 N 1.46502 * 109.47042 * 295.03878 * 20 18 17 22 22 C 1.36939 * 119.99870 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00047 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00031 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00333 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46854 * 89.99876 * 26 24 22 28 28 H 1.48499 * 109.47576 * 209.99829 * 26 24 22 29 29 H 1.48501 * 109.46988 * 329.99987 * 26 24 22 30 30 H 1.09005 * 109.47229 * 180.08186 * 1 2 3 31 31 H 1.09006 * 109.47175 * 300.07877 * 1 2 3 32 32 H 1.08999 * 109.47180 * 60.07965 * 1 2 3 33 33 H 1.08995 * 109.58819 * 185.10509 * 4 2 1 34 34 H 1.09003 * 109.58237 * 305.38755 * 4 2 1 35 35 H 1.07997 * 119.53277 * 180.27317 * 10 9 8 36 36 H 1.07998 * 120.77217 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.58338 * 66.17905 * 16 5 4 38 38 H 1.09000 * 109.58971 * 186.60735 * 16 5 4 39 39 H 1.09002 * 109.49539 * 294.67652 * 17 16 5 40 40 H 1.09005 * 109.49464 * 174.58672 * 17 16 5 41 41 H 1.09000 * 109.46902 * 55.03086 * 20 18 17 42 42 H 1.08994 * 109.47354 * 175.03275 * 20 18 17 43 43 H 0.97003 * 120.00300 * 359.97438 * 21 20 18 44 44 H 0.97006 * 119.99649 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9740 -2.7217 2.1780 7 8 0.5330 -3.8464 2.0430 8 6 0.7671 -1.9939 3.4484 9 7 1.3807 -0.8330 3.6500 10 6 1.2201 -0.1514 4.7615 11 6 0.4048 -0.6289 5.7810 12 9 0.2525 0.0797 6.9211 13 6 -0.2512 -1.8401 5.6160 14 6 -0.0667 -2.5357 4.4288 15 9 -0.6853 -3.7193 4.2248 16 6 2.0140 -2.9040 -0.0307 17 6 1.5030 -2.1557 -1.2660 18 6 2.0408 -0.7230 -1.2483 19 1 3.1305 -0.7444 -1.2352 20 6 1.5604 0.0169 -2.4984 21 7 2.1469 -0.6037 -3.6888 22 6 1.8586 -0.1075 -4.9321 23 1 1.1986 0.7411 -5.0352 24 6 2.4147 -0.6951 -6.0600 25 7 3.2196 -1.7290 -5.9344 26 14 2.0210 -0.0187 -7.7562 27 1 3.0139 1.0256 -8.1153 28 1 2.0766 -1.1182 -8.7528 29 1 0.6595 0.5743 -7.7488 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 3.1274 -0.6463 1.2980 34 1 1.6026 -0.2714 2.1390 35 1 1.7326 0.7909 4.8868 36 1 -0.8899 -2.2329 6.3932 37 1 3.0980 -3.0042 -0.0867 38 1 1.5554 -3.8918 0.0138 39 1 0.4132 -2.1355 -1.2541 40 1 1.8481 -2.6629 -2.1670 41 1 0.4734 -0.0384 -2.5581 42 1 1.8686 1.0609 -2.4436 43 1 2.7400 -1.3657 -3.5963 44 1 3.6085 -2.1395 -6.7227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184675070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:22 Heat of formation + Delta-G solvation = -55.572838 kcal Electronic energy + Delta-G solvation = -29816.811164 eV Core-core repulsion = 25406.404043 eV Total energy + Delta-G solvation = -4410.407120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.77267 -49.48821 -41.25046 -39.70373 -38.05799 -35.02319 -33.46920 -33.00315 -31.97597 -31.32284 -30.24332 -27.09855 -26.73679 -25.29759 -24.52813 -23.53061 -22.82081 -21.51684 -20.68376 -18.92232 -18.86442 -18.51977 -17.56572 -16.93002 -16.83901 -16.47428 -16.29194 -16.01241 -15.41908 -15.35950 -15.03629 -14.91480 -14.37953 -14.33785 -14.01950 -13.91703 -13.78106 -13.52740 -13.28467 -13.04730 -12.81281 -12.45176 -12.27562 -12.13182 -11.66885 -11.37719 -11.02153 -10.91350 -10.74358 -10.71426 -10.56008 -10.35883 -10.22650 -10.03669 -9.93407 -9.71900 -9.58710 -9.29662 -8.83032 -8.55434 -6.87427 -5.73926 -3.01742 -0.26845 0.15077 2.17196 2.64053 3.04135 3.08461 3.34971 3.45133 3.47320 3.50310 3.52003 3.87590 3.95377 4.29627 4.61601 4.71372 4.87625 4.94943 5.03128 5.06183 5.10394 5.31099 5.39675 5.57935 5.60605 5.65998 5.69026 5.82861 5.84874 5.96763 6.07313 6.12487 6.19081 6.28884 6.32431 6.44167 6.46339 6.56969 6.72970 6.78228 6.86920 6.98986 7.30979 7.72597 7.93061 8.45609 9.56543 10.15649 10.50039 11.49114 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.002404 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.149725 B =11643.096219 C =12256.592692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.081 0.919 4 C 0.076 3.924 5 N -0.578 5.578 6 C 0.565 3.435 7 O -0.525 6.525 8 C 0.043 3.957 9 N -0.389 5.389 10 C 0.059 3.941 11 C 0.104 3.896 12 F -0.115 7.115 13 C -0.156 4.156 14 C 0.144 3.856 15 F -0.094 7.094 16 C 0.109 3.891 17 C -0.125 4.125 18 C -0.090 4.090 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.186 0.814 36 H 0.169 0.831 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 2.732 28.114 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.046 4.046 5 N -0.309 5.309 6 C 0.350 3.650 7 O -0.402 6.402 8 C -0.096 4.096 9 N -0.099 5.099 10 C -0.102 4.102 11 C 0.082 3.918 12 F -0.093 7.093 13 C -0.183 4.183 14 C 0.121 3.879 15 F -0.072 7.072 16 C -0.013 4.013 17 C -0.163 4.163 18 C -0.109 4.109 19 H 0.089 0.911 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.203 0.797 36 H 0.186 0.814 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.533 2.480 27.238 27.724 hybrid contribution -0.592 -0.151 -0.175 0.636 sum -5.126 2.328 27.062 27.642 Atomic orbital electron populations 1.21876 0.95290 1.01895 1.01263 1.21510 0.96304 0.99546 0.94575 0.90037 1.23087 1.00674 0.79549 1.01306 1.47923 1.53551 1.12316 1.17063 1.17496 0.79480 0.85525 0.82450 1.90867 1.49552 1.18558 1.81178 1.21664 0.97887 0.93562 0.96477 1.67931 1.18793 1.04382 1.18826 1.23339 0.97261 1.01640 0.87919 1.18741 0.97934 0.90726 0.84427 1.91600 1.93847 1.76867 1.47036 1.21714 1.03005 0.94971 0.98606 1.18266 0.93055 0.83348 0.93225 1.91682 1.79195 1.41659 1.94635 1.21839 1.00172 0.95975 0.83300 1.21956 1.01375 0.95872 0.97129 1.21335 1.00253 0.94763 0.94557 0.91054 1.20714 0.95854 0.94577 0.85744 1.42392 1.56801 1.37584 1.00864 1.19224 1.22950 1.10745 0.83889 0.91323 1.24725 1.00178 0.98398 0.97790 1.69658 1.35725 1.24408 1.28525 0.86202 0.77766 0.77771 0.84540 1.21787 1.21803 1.20833 0.92614 0.93763 0.91873 0.91485 0.84176 0.79714 0.81380 0.91016 0.89103 0.91423 0.89405 0.96184 0.96569 0.78287 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.38 37.16 0.31 -1.53 16 2 C -0.10 -1.24 2.72 -90.50 -0.25 -1.49 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.08 0.85 5.29 -3.71 -0.02 0.83 16 5 N -0.58 -7.49 2.41 -173.87 -0.42 -7.91 16 6 C 0.57 7.76 7.65 -12.32 -0.09 7.67 16 7 O -0.53 -8.79 14.78 5.32 0.08 -8.71 16 8 C 0.04 0.46 6.61 -82.96 -0.55 -0.09 16 9 N -0.39 -3.30 6.07 -9.70 -0.06 -3.36 16 10 C 0.06 0.34 11.17 -17.47 -0.20 0.14 16 11 C 0.10 0.60 7.35 -39.12 -0.29 0.31 16 12 F -0.12 -0.66 17.28 2.25 0.04 -0.62 16 13 C -0.16 -0.99 10.14 -39.18 -0.40 -1.38 16 14 C 0.14 1.37 7.30 -38.84 -0.28 1.09 16 15 F -0.09 -1.10 15.58 2.25 0.04 -1.06 16 16 C 0.11 1.51 6.44 -3.71 -0.02 1.49 16 17 C -0.13 -1.97 4.90 -26.61 -0.13 -2.10 16 18 C -0.09 -1.41 1.96 -90.58 -0.18 -1.59 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.14 5.19 -4.04 -0.02 3.12 16 21 N -0.73 -18.39 5.32 -59.91 -0.32 -18.71 16 22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 26 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.78 5.97 -51.93 -0.31 0.47 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.38 3.96 -87.54 -0.35 1.04 16 35 H 0.19 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 39 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 40 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 41 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.38 10.05 6.85 -40.82 -0.28 9.77 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -32.81 357.66 -7.53 -40.35 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.62 Total: 5.55 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.36 Total: -0.88 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.07 Total: -57.57 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.07 Total: -1.68 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.81 -7.53 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.227 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds