Wall clock time and date at job start Wed Apr 1 2020 00:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52440 * 2 1 4 4 C 1.53193 * 109.49904 * 120.08068 * 2 1 3 5 5 N 1.46924 * 108.77771 * 65.31596 * 4 2 1 6 6 C 1.34774 * 120.63071 * 233.63585 * 5 4 2 7 7 O 1.21551 * 119.99674 * 172.14200 * 6 5 4 8 8 C 1.47873 * 120.00032 * 352.14072 * 6 5 4 9 9 N 1.32848 * 119.72311 * 352.14993 * 8 6 5 10 10 C 1.31369 * 121.68793 * 179.70972 * 9 8 6 11 11 C 1.39002 * 120.93288 * 0.57135 * 10 9 8 12 12 F 1.35101 * 120.32628 * 179.74432 * 11 10 9 13 13 C 1.38728 * 119.34248 * 359.72083 * 11 10 9 14 14 C 1.38828 * 118.44562 * 0.02562 * 13 11 10 15 15 F 1.35101 * 120.48052 * 179.97438 * 14 13 11 16 16 C 1.46925 * 118.73705 * 53.60580 * 5 4 2 17 17 C 1.53194 * 108.77771 * 306.39735 * 16 5 4 18 18 C 1.53038 * 109.31513 * 54.63178 * 17 16 5 19 19 H 1.09003 * 109.45667 * 58.65375 * 18 17 16 20 20 C 1.52999 * 109.45159 * 178.62157 * 18 17 16 21 21 N 1.46502 * 109.47042 * 295.03878 * 20 18 17 22 22 C 1.36939 * 119.99870 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00047 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00031 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00333 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46854 * 89.99876 * 26 24 22 28 28 H 1.48499 * 109.47576 * 209.99829 * 26 24 22 29 29 H 1.48501 * 109.46988 * 329.99987 * 26 24 22 30 30 H 1.09005 * 109.47229 * 180.08186 * 1 2 3 31 31 H 1.09006 * 109.47175 * 300.07877 * 1 2 3 32 32 H 1.08999 * 109.47180 * 60.07965 * 1 2 3 33 33 H 1.08995 * 109.58819 * 185.10509 * 4 2 1 34 34 H 1.09003 * 109.58237 * 305.38755 * 4 2 1 35 35 H 1.07997 * 119.53277 * 180.27317 * 10 9 8 36 36 H 1.07998 * 120.77217 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.58338 * 66.17905 * 16 5 4 38 38 H 1.09000 * 109.58971 * 186.60735 * 16 5 4 39 39 H 1.09002 * 109.49539 * 294.67652 * 17 16 5 40 40 H 1.09005 * 109.49464 * 174.58672 * 17 16 5 41 41 H 1.09000 * 109.46902 * 55.03086 * 20 18 17 42 42 H 1.08994 * 109.47354 * 175.03275 * 20 18 17 43 43 H 0.97003 * 120.00300 * 359.97438 * 21 20 18 44 44 H 0.97006 * 119.99649 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9740 -2.7217 2.1780 7 8 0.5330 -3.8464 2.0430 8 6 0.7671 -1.9939 3.4484 9 7 1.3807 -0.8330 3.6500 10 6 1.2201 -0.1514 4.7615 11 6 0.4048 -0.6289 5.7810 12 9 0.2525 0.0797 6.9211 13 6 -0.2512 -1.8401 5.6160 14 6 -0.0667 -2.5357 4.4288 15 9 -0.6853 -3.7193 4.2248 16 6 2.0140 -2.9040 -0.0307 17 6 1.5030 -2.1557 -1.2660 18 6 2.0408 -0.7230 -1.2483 19 1 3.1305 -0.7444 -1.2352 20 6 1.5604 0.0169 -2.4984 21 7 2.1469 -0.6037 -3.6888 22 6 1.8586 -0.1075 -4.9321 23 1 1.1986 0.7411 -5.0352 24 6 2.4147 -0.6951 -6.0600 25 7 3.2196 -1.7290 -5.9344 26 14 2.0210 -0.0187 -7.7562 27 1 3.0139 1.0256 -8.1153 28 1 2.0766 -1.1182 -8.7528 29 1 0.6595 0.5743 -7.7488 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 3.1274 -0.6463 1.2980 34 1 1.6026 -0.2714 2.1390 35 1 1.7326 0.7909 4.8868 36 1 -0.8899 -2.2329 6.3932 37 1 3.0980 -3.0042 -0.0867 38 1 1.5554 -3.8918 0.0138 39 1 0.4132 -2.1355 -1.2541 40 1 1.8481 -2.6629 -2.1670 41 1 0.4734 -0.0384 -2.5581 42 1 1.8686 1.0609 -2.4436 43 1 2.7400 -1.3657 -3.5963 44 1 3.6085 -2.1395 -6.7227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184675070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:21 Heat of formation + Delta-G solvation = -75.529864 kcal Electronic energy + Delta-G solvation = -29817.676565 eV Core-core repulsion = 25406.404043 eV Total energy + Delta-G solvation = -4411.272522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.25620 -50.23025 -42.07460 -40.59374 -39.22621 -36.61966 -34.82570 -33.85721 -33.07563 -32.55073 -31.61280 -28.58423 -27.75741 -26.24882 -25.30700 -25.15088 -23.87175 -22.94854 -21.71223 -19.94842 -19.54460 -19.35188 -19.06542 -18.13276 -17.57931 -17.32231 -17.08855 -16.78274 -16.62866 -16.34524 -16.16271 -15.79249 -15.55214 -15.49277 -15.31177 -15.05831 -14.93862 -14.77613 -14.32860 -14.21799 -13.83495 -13.70431 -13.55375 -13.33635 -12.97594 -12.79983 -12.73833 -12.44862 -12.18603 -12.01898 -11.94084 -11.66454 -11.48275 -11.42108 -11.22597 -11.10392 -10.88918 -10.23624 -10.20364 -9.62178 -8.96141 -7.94096 -5.21945 -0.91766 -0.38015 1.38943 1.46826 1.48578 1.56919 1.73611 2.30500 2.44406 2.56648 2.74160 2.79700 3.27532 3.38507 3.39357 3.70994 3.81180 3.83726 3.86691 4.08775 4.20580 4.29838 4.30536 4.33406 4.44700 4.53591 4.61328 4.69841 4.72763 4.81904 4.92537 4.99743 5.03173 5.10115 5.19457 5.21794 5.24084 5.31257 5.39862 5.50343 5.59142 5.68977 6.13176 6.28768 6.33891 6.91696 7.34959 8.12807 8.35627 9.29536 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.002404 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.149725 B =11643.096219 C =12256.592692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.102 0.898 4 C 0.079 3.921 5 N -0.578 5.578 6 C 0.560 3.440 7 O -0.568 6.568 8 C 0.023 3.977 9 N -0.398 5.398 10 C 0.078 3.922 11 C 0.119 3.881 12 F -0.108 7.108 13 C -0.142 4.142 14 C 0.127 3.873 15 F -0.114 7.114 16 C 0.116 3.884 17 C -0.116 4.116 18 C -0.080 4.080 19 H 0.068 0.932 20 C 0.159 3.841 21 N -0.744 5.744 22 C -0.243 4.243 23 H 0.073 0.927 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.972 3.028 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.271 1.271 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.225 0.775 36 H 0.193 0.807 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.021 0.979 43 H 0.374 0.626 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 5.381 30.662 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.120 0.880 4 C -0.042 4.042 5 N -0.308 5.308 6 C 0.347 3.653 7 O -0.447 6.447 8 C -0.113 4.113 9 N -0.108 5.108 10 C -0.084 4.084 11 C 0.097 3.903 12 F -0.086 7.086 13 C -0.168 4.168 14 C 0.104 3.896 15 F -0.093 7.093 16 C -0.007 4.007 17 C -0.154 4.154 18 C -0.099 4.099 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.387 5.387 22 C -0.375 4.375 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.801 3.199 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.196 1.196 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.179 0.821 35 H 0.241 0.759 36 H 0.210 0.790 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.206 0.794 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.694 5.170 29.813 30.620 hybrid contribution -0.581 -0.881 -0.806 1.328 sum -5.275 4.289 29.007 29.793 Atomic orbital electron populations 1.21820 0.95322 1.00824 1.01874 1.21511 0.96159 1.00279 0.93273 0.88036 1.23285 1.01491 0.78186 1.01231 1.47979 1.53381 1.13009 1.16443 1.17985 0.78529 0.85277 0.83494 1.90832 1.51191 1.20498 1.82180 1.21155 0.99877 0.94830 0.95460 1.67725 1.18875 1.03819 1.20401 1.23924 0.96053 1.01949 0.86508 1.18704 0.97036 0.90138 0.84402 1.91635 1.93667 1.76589 1.46723 1.21901 1.02566 0.94661 0.97683 1.18447 0.93659 0.83237 0.94293 1.91629 1.79730 1.42994 1.94904 1.21632 1.00475 0.95326 0.83237 1.21787 1.00545 0.96231 0.96849 1.21240 0.99970 0.94314 0.94375 0.91322 1.20863 0.95276 0.94886 0.85692 1.42612 1.56835 1.37518 1.01743 1.19625 1.22188 1.10445 0.85238 0.90881 1.25548 1.00711 0.99083 1.01542 1.69817 1.37184 1.25912 1.29141 0.85157 0.78013 0.76908 0.79802 1.21243 1.22283 1.19600 0.94542 0.91304 0.93032 0.90363 0.82114 0.75904 0.78980 0.90014 0.90436 0.92548 0.92372 0.96589 0.96070 0.79362 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.38 71.98 0.60 -2.77 16 2 C -0.09 -2.15 2.72 -10.72 -0.03 -2.17 16 3 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.08 1.60 5.29 86.36 0.46 2.05 16 5 N -0.58 -14.88 2.41 -822.28 -1.98 -16.86 16 6 C 0.56 15.54 7.65 86.80 0.66 16.21 16 7 O -0.57 -19.96 14.78 -3.88 -0.06 -20.02 16 8 C 0.02 0.47 6.61 41.88 0.28 0.74 16 9 N -0.40 -5.53 6.07 -184.61 -1.12 -6.65 16 10 C 0.08 0.54 11.17 84.95 0.95 1.49 16 11 C 0.12 0.88 7.35 22.57 0.17 1.05 16 12 F -0.11 -0.75 17.28 44.97 0.78 0.03 16 13 C -0.14 -1.39 10.14 22.53 0.23 -1.16 16 14 C 0.13 2.28 7.30 22.75 0.17 2.45 16 15 F -0.11 -2.73 15.58 44.97 0.70 -2.03 16 16 C 0.12 3.35 6.44 86.36 0.56 3.90 16 17 C -0.12 -3.82 4.90 30.67 0.15 -3.67 16 18 C -0.08 -2.50 1.96 -10.77 -0.02 -2.52 16 19 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.16 6.31 5.19 86.38 0.45 6.76 16 21 N -0.74 -38.16 5.32 -343.46 -1.83 -39.99 16 22 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 25 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 26 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 30 H 0.04 1.01 5.97 -2.38 -0.01 0.99 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.05 1.34 6.58 -2.39 -0.02 1.32 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 2.66 3.96 -72.71 -0.29 2.37 16 35 H 0.22 -0.19 8.06 -2.91 -0.02 -0.22 16 36 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.08 2.45 7.00 -2.39 -0.02 2.44 16 39 H 0.06 1.96 6.34 -2.39 -0.02 1.94 16 40 H 0.06 2.25 7.15 -2.38 -0.02 2.23 16 41 H 0.02 0.66 6.74 -2.39 -0.02 0.65 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.37 20.33 6.85 -92.71 -0.63 19.69 16 44 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -73.58 357.66 4.87 -68.71 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.15 Total: 22.39 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.92 Total: 5.41 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -4.64 Total: -123.30 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 1.48 Total: -2.00 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.58 4.87 -68.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.822 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds