Wall clock time and date at job start Wed Apr 1 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49820 * 2 1 4 4 C 1.53622 * 109.43301 * 120.22830 * 2 1 3 5 5 N 1.46927 * 108.54006 * 174.72548 * 4 2 1 6 6 C 1.34777 * 120.63101 * 126.37228 * 5 4 2 7 7 O 1.21555 * 119.99879 * 3.41205 * 6 5 4 8 8 C 1.47884 * 120.00256 * 183.41908 * 6 5 4 9 9 N 1.32839 * 119.71687 * 319.98941 * 8 6 5 10 10 C 1.31365 * 121.68674 * 179.97438 * 9 8 6 11 11 C 1.39003 * 120.93287 * 0.02562 * 10 9 8 12 12 F 1.35104 * 120.32854 * 179.97438 * 11 10 9 13 13 C 1.38722 * 119.34286 * 359.74573 * 11 10 9 14 14 C 1.38836 * 118.44332 * 0.49405 * 13 11 10 15 15 F 1.35107 * 120.48050 * 179.78225 * 14 13 11 16 16 C 1.46922 * 118.73979 * 306.09122 * 5 4 2 17 17 C 1.53188 * 108.77702 * 53.86237 * 16 5 4 18 18 C 1.53042 * 109.31388 * 305.36735 * 17 16 5 19 19 H 1.08998 * 109.45596 * 301.34262 * 18 17 16 20 20 C 1.53002 * 109.46148 * 181.38453 * 18 17 16 21 21 N 1.46504 * 109.47010 * 64.99853 * 20 18 17 22 22 C 1.36935 * 119.99570 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00163 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99860 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99532 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00244 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47208 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47507 * 119.99763 * 26 24 22 29 29 H 1.48504 * 109.47191 * 240.00102 * 26 24 22 30 30 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47213 * 300.06024 * 1 2 3 32 32 H 1.08997 * 109.47210 * 60.06417 * 1 2 3 33 33 H 1.09003 * 109.74059 * 54.98858 * 4 2 1 34 34 H 1.09001 * 109.66317 * 294.41803 * 4 2 1 35 35 H 1.07996 * 119.53604 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.77397 * 180.27058 * 13 11 10 37 37 H 1.09000 * 109.58796 * 173.65071 * 16 5 4 38 38 H 1.09004 * 109.58962 * 294.07461 * 16 5 4 39 39 H 1.09004 * 109.49389 * 65.31490 * 17 16 5 40 40 H 1.08998 * 109.50131 * 185.37846 * 17 16 5 41 41 H 1.08997 * 109.46955 * 184.99596 * 20 18 17 42 42 H 1.09000 * 109.46974 * 304.99500 * 20 18 17 43 43 H 0.96999 * 119.99937 * 359.97438 * 21 20 18 44 44 H 0.97009 * 119.99826 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5046 -0.8294 1.1692 6 6 4.2812 -0.3871 2.1780 7 8 3.7710 0.0431 3.1940 8 6 5.7539 -0.4251 2.0489 9 7 6.3379 -1.4714 1.4757 10 6 7.6425 -1.5451 1.3405 11 6 8.4670 -0.5231 1.7963 12 9 9.8073 -0.6118 1.6514 13 6 7.8997 0.5911 2.3972 14 6 6.5186 0.6390 2.5310 15 9 5.9230 1.7025 3.1138 16 6 4.1053 -1.4266 -0.0314 17 6 3.5708 -0.6946 -1.2663 18 6 2.0408 -0.7226 -1.2487 19 1 1.6967 -1.7568 -1.2360 20 6 1.5036 -0.0223 -2.4985 21 7 1.8916 -0.7828 -3.6891 22 6 1.5207 -0.3445 -4.9323 23 1 0.9426 0.5619 -5.0351 24 6 1.8888 -1.0646 -6.0605 25 7 2.5947 -2.1684 -5.9352 26 14 1.3835 -0.4665 -7.7564 27 1 0.6028 0.7900 -7.6258 28 1 2.5971 -0.2119 -8.5734 29 1 0.5494 -1.5017 -8.4182 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6085 -1.7288 1.2979 34 1 1.7630 -0.1670 2.1431 35 1 8.0808 -2.4125 0.8693 36 1 8.5181 1.4007 2.7557 37 1 5.1896 -1.3245 0.0131 38 1 3.8376 -2.4817 -0.0877 39 1 3.9159 0.3394 -1.2540 40 1 3.9338 -1.1885 -2.1676 41 1 0.4166 0.0364 -2.4432 42 1 1.9192 0.9835 -2.5583 43 1 2.4118 -1.5962 -3.5968 44 1 2.8516 -2.6719 -6.7236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184675072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:28 Heat of formation + Delta-G solvation = -68.806598 kcal Electronic energy + Delta-G solvation = -29672.424658 eV Core-core repulsion = 25261.443679 eV Total energy + Delta-G solvation = -4410.980979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.67239 -49.50670 -41.12775 -39.66194 -38.00302 -35.07076 -33.74926 -32.91361 -32.00102 -31.42924 -30.30799 -27.03595 -26.89973 -25.17213 -24.27117 -23.58528 -22.48932 -21.47226 -20.53924 -19.50675 -18.78145 -18.67970 -17.66494 -17.11583 -16.88075 -16.44850 -16.30320 -15.87061 -15.49958 -15.27384 -14.90556 -14.85178 -14.48480 -14.15660 -14.06254 -13.84012 -13.58212 -13.53674 -13.18011 -13.05158 -12.82198 -12.57253 -12.41133 -11.91743 -11.78557 -11.58236 -11.00441 -10.89364 -10.84767 -10.75961 -10.50827 -10.39877 -10.35288 -10.18748 -9.99930 -9.72013 -9.64190 -9.49089 -8.86871 -8.65120 -6.90405 -5.77288 -3.04975 -0.13494 0.24449 2.19748 2.59215 2.91054 3.11838 3.40532 3.42542 3.48630 3.50492 3.65917 3.95539 3.99803 4.39326 4.58187 4.75026 4.86429 4.92609 4.95235 5.02148 5.13102 5.18429 5.36189 5.47749 5.56752 5.61068 5.69311 5.79312 5.81613 5.88250 5.94109 6.01862 6.09100 6.21878 6.28774 6.33779 6.43729 6.49500 6.63139 6.83573 6.88533 6.93632 7.21005 7.70534 7.85886 8.42193 9.53459 10.11988 10.46644 11.45761 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.002943 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.947490 B = 9510.570197 C =11106.338263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.584 5.584 6 C 0.573 3.427 7 O -0.527 6.527 8 C 0.046 3.954 9 N -0.393 5.393 10 C 0.065 3.935 11 C 0.102 3.898 12 F -0.115 7.115 13 C -0.154 4.154 14 C 0.136 3.864 15 F -0.102 7.102 16 C 0.098 3.902 17 C -0.128 4.128 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 2.395 19.281 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.005 4.005 5 N -0.315 5.315 6 C 0.358 3.642 7 O -0.403 6.403 8 C -0.093 4.093 9 N -0.103 5.103 10 C -0.096 4.096 11 C 0.080 3.920 12 F -0.093 7.093 13 C -0.181 4.181 14 C 0.113 3.887 15 F -0.080 7.080 16 C -0.023 4.023 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.203 0.797 36 H 0.186 0.814 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.376 2.101 19.410 21.658 hybrid contribution 0.787 0.855 -0.749 1.382 sum 10.163 2.955 18.661 21.453 Atomic orbital electron populations 1.21830 0.94215 1.02281 1.02119 1.21549 0.96241 0.99861 0.94036 0.90847 1.21916 0.77785 1.01355 0.99411 1.47992 1.07078 1.58426 1.17972 1.17513 0.84317 0.78581 0.83822 1.90837 1.73597 1.47130 1.28781 1.21448 0.95920 0.91670 1.00280 1.67959 1.11054 1.21838 1.09486 1.23217 0.88287 0.98840 0.99281 1.18741 0.78819 0.95500 0.98903 1.91600 1.28528 1.96042 1.93124 1.21666 0.93762 1.00292 1.02380 1.18234 0.90138 0.85394 0.94903 1.91647 1.83440 1.52434 1.80455 1.22294 0.99518 0.97463 0.83074 1.21987 0.96064 1.00984 0.97565 1.21357 0.94755 1.00263 0.94482 0.90817 1.20755 0.96677 0.94018 0.85648 1.42384 1.65433 1.28944 1.00850 1.19276 1.27549 1.06125 0.83849 0.91254 1.24715 1.00985 0.97555 0.97770 1.69664 1.42896 1.17319 1.28396 0.86140 0.77651 0.77767 0.84792 1.20607 1.21923 1.21893 0.92412 0.92937 0.91246 0.90859 0.89012 0.79651 0.81373 0.88126 0.90553 0.92101 0.89166 0.95766 0.96642 0.78302 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.82 37.16 0.33 -1.42 16 2 C -0.10 -1.26 2.43 -90.28 -0.22 -1.48 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.46 5.74 -3.49 -0.02 1.44 16 5 N -0.58 -7.68 2.97 -173.60 -0.51 -8.20 16 6 C 0.57 8.08 7.32 -12.31 -0.09 7.99 16 7 O -0.53 -8.74 15.67 5.32 0.08 -8.66 16 8 C 0.05 0.54 6.01 -82.97 -0.50 0.04 16 9 N -0.39 -4.03 7.27 -9.70 -0.07 -4.10 16 10 C 0.07 0.49 11.17 -17.47 -0.20 0.30 16 11 C 0.10 0.75 7.35 -39.12 -0.29 0.46 16 12 F -0.11 -0.82 17.28 2.25 0.04 -0.78 16 13 C -0.15 -1.17 10.14 -39.18 -0.40 -1.56 16 14 C 0.14 1.43 7.27 -38.84 -0.28 1.15 16 15 F -0.10 -1.22 16.25 2.25 0.04 -1.19 16 16 C 0.10 1.24 6.02 -3.71 -0.02 1.22 16 17 C -0.13 -1.89 5.25 -26.61 -0.14 -2.03 16 18 C -0.09 -1.38 1.73 -90.57 -0.16 -1.53 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.16 3.04 5.41 -4.04 -0.02 3.02 16 21 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 26 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.90 6.29 -51.93 -0.33 0.57 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.17 7.02 -51.93 -0.36 0.81 16 35 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.10 1.20 4.57 -51.93 -0.24 0.96 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.52 7.15 -51.93 -0.37 1.15 16 41 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 9.79 6.85 -40.82 -0.28 9.51 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -32.12 364.23 -7.48 -39.59 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.67 Total: 5.55 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.25 Total: 0.38 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.18 Total: -57.59 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.08 Total: -1.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.12 -7.48 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.215 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds