Wall clock time and date at job start Wed Apr 1 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49820 * 2 1 4 4 C 1.53622 * 109.43301 * 120.22830 * 2 1 3 5 5 N 1.46927 * 108.54006 * 174.72548 * 4 2 1 6 6 C 1.34777 * 120.63101 * 126.37228 * 5 4 2 7 7 O 1.21555 * 119.99879 * 3.41205 * 6 5 4 8 8 C 1.47884 * 120.00256 * 183.41908 * 6 5 4 9 9 N 1.32839 * 119.71687 * 319.98941 * 8 6 5 10 10 C 1.31365 * 121.68674 * 179.97438 * 9 8 6 11 11 C 1.39003 * 120.93287 * 0.02562 * 10 9 8 12 12 F 1.35104 * 120.32854 * 179.97438 * 11 10 9 13 13 C 1.38722 * 119.34286 * 359.74573 * 11 10 9 14 14 C 1.38836 * 118.44332 * 0.49405 * 13 11 10 15 15 F 1.35107 * 120.48050 * 179.78225 * 14 13 11 16 16 C 1.46922 * 118.73979 * 306.09122 * 5 4 2 17 17 C 1.53188 * 108.77702 * 53.86237 * 16 5 4 18 18 C 1.53042 * 109.31388 * 305.36735 * 17 16 5 19 19 H 1.08998 * 109.45596 * 301.34262 * 18 17 16 20 20 C 1.53002 * 109.46148 * 181.38453 * 18 17 16 21 21 N 1.46504 * 109.47010 * 64.99853 * 20 18 17 22 22 C 1.36935 * 119.99570 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00163 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99860 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99532 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00244 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47208 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47507 * 119.99763 * 26 24 22 29 29 H 1.48504 * 109.47191 * 240.00102 * 26 24 22 30 30 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47213 * 300.06024 * 1 2 3 32 32 H 1.08997 * 109.47210 * 60.06417 * 1 2 3 33 33 H 1.09003 * 109.74059 * 54.98858 * 4 2 1 34 34 H 1.09001 * 109.66317 * 294.41803 * 4 2 1 35 35 H 1.07996 * 119.53604 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.77397 * 180.27058 * 13 11 10 37 37 H 1.09000 * 109.58796 * 173.65071 * 16 5 4 38 38 H 1.09004 * 109.58962 * 294.07461 * 16 5 4 39 39 H 1.09004 * 109.49389 * 65.31490 * 17 16 5 40 40 H 1.08998 * 109.50131 * 185.37846 * 17 16 5 41 41 H 1.08997 * 109.46955 * 184.99596 * 20 18 17 42 42 H 1.09000 * 109.46974 * 304.99500 * 20 18 17 43 43 H 0.96999 * 119.99937 * 359.97438 * 21 20 18 44 44 H 0.97009 * 119.99826 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5046 -0.8294 1.1692 6 6 4.2812 -0.3871 2.1780 7 8 3.7710 0.0431 3.1940 8 6 5.7539 -0.4251 2.0489 9 7 6.3379 -1.4714 1.4757 10 6 7.6425 -1.5451 1.3405 11 6 8.4670 -0.5231 1.7963 12 9 9.8073 -0.6118 1.6514 13 6 7.8997 0.5911 2.3972 14 6 6.5186 0.6390 2.5310 15 9 5.9230 1.7025 3.1138 16 6 4.1053 -1.4266 -0.0314 17 6 3.5708 -0.6946 -1.2663 18 6 2.0408 -0.7226 -1.2487 19 1 1.6967 -1.7568 -1.2360 20 6 1.5036 -0.0223 -2.4985 21 7 1.8916 -0.7828 -3.6891 22 6 1.5207 -0.3445 -4.9323 23 1 0.9426 0.5619 -5.0351 24 6 1.8888 -1.0646 -6.0605 25 7 2.5947 -2.1684 -5.9352 26 14 1.3835 -0.4665 -7.7564 27 1 0.6028 0.7900 -7.6258 28 1 2.5971 -0.2119 -8.5734 29 1 0.5494 -1.5017 -8.4182 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6085 -1.7288 1.2979 34 1 1.7630 -0.1670 2.1431 35 1 8.0808 -2.4125 0.8693 36 1 8.5181 1.4007 2.7557 37 1 5.1896 -1.3245 0.0131 38 1 3.8376 -2.4817 -0.0877 39 1 3.9159 0.3394 -1.2540 40 1 3.9338 -1.1885 -2.1676 41 1 0.4166 0.0364 -2.4432 42 1 1.9192 0.9835 -2.5583 43 1 2.4118 -1.5962 -3.5968 44 1 2.8516 -2.6719 -6.7236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184675072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:27 Heat of formation + Delta-G solvation = -88.014080 kcal Electronic energy + Delta-G solvation = -29673.257557 eV Core-core repulsion = 25261.443679 eV Total energy + Delta-G solvation = -4411.813878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.33611 -50.26861 -42.01742 -40.59939 -39.19718 -36.61376 -35.12417 -33.75809 -33.38275 -32.22498 -31.99469 -28.44143 -27.96993 -26.14585 -25.37292 -24.86936 -23.75093 -22.78609 -21.63516 -20.66645 -19.52643 -19.41285 -19.12148 -18.54659 -17.74840 -17.24179 -17.13724 -16.77297 -16.60777 -16.29423 -16.25859 -15.74528 -15.63091 -15.56999 -15.26747 -15.08854 -14.69701 -14.59668 -14.36295 -14.18671 -13.94337 -13.81028 -13.62870 -13.12796 -12.94308 -12.89937 -12.78332 -12.66527 -12.14053 -11.97406 -11.88841 -11.65422 -11.64966 -11.59390 -11.20370 -11.12830 -10.93531 -10.67610 -10.24717 -9.74376 -8.94576 -7.93138 -5.20553 -0.87712 -0.40576 1.26589 1.48539 1.48780 1.58673 1.65469 2.13855 2.40186 2.57424 2.69649 2.82795 3.24474 3.36435 3.40529 3.65800 3.71398 3.77773 3.84562 3.99779 4.13394 4.23468 4.27168 4.32992 4.43304 4.52014 4.57730 4.63843 4.68037 4.75178 4.79606 4.90933 5.00055 5.10260 5.11728 5.16367 5.22543 5.26539 5.35921 5.46798 5.52469 5.58814 6.11971 6.21028 6.29999 6.81447 7.36729 8.13078 8.37431 9.30384 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.002943 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.947490 B = 9510.570197 C =11106.338263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.585 5.585 6 C 0.569 3.431 7 O -0.560 6.560 8 C 0.024 3.976 9 N -0.408 5.408 10 C 0.075 3.925 11 C 0.115 3.885 12 F -0.108 7.108 13 C -0.139 4.139 14 C 0.121 3.879 15 F -0.116 7.116 16 C 0.109 3.891 17 C -0.121 4.121 18 C -0.079 4.079 19 H 0.072 0.928 20 C 0.157 3.843 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.269 1.269 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.218 0.782 36 H 0.196 0.804 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.009 0.991 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 2.449 19.703 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.315 5.315 6 C 0.355 3.645 7 O -0.439 6.439 8 C -0.114 4.114 9 N -0.118 5.118 10 C -0.087 4.087 11 C 0.093 3.907 12 F -0.087 7.087 13 C -0.166 4.166 14 C 0.098 3.902 15 F -0.095 7.095 16 C -0.013 4.013 17 C -0.159 4.159 18 C -0.098 4.098 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.194 1.194 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.234 0.766 36 H 0.213 0.787 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.027 0.973 43 H 0.208 0.792 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.305 2.182 19.850 22.471 hybrid contribution 0.580 0.847 -0.852 1.334 sum 10.885 3.029 18.997 22.103 Atomic orbital electron populations 1.21799 0.93076 1.02782 1.02454 1.21442 0.97117 0.99101 0.93024 0.91578 1.21930 0.77673 1.01970 0.98724 1.48060 1.07363 1.58157 1.17880 1.17883 0.85489 0.77763 0.83349 1.90804 1.74567 1.48568 1.29928 1.21174 0.94831 0.93041 1.02323 1.67907 1.12382 1.21432 1.10114 1.23733 0.87357 0.99629 0.97987 1.18697 0.78926 0.95114 0.98011 1.91628 1.28129 1.95961 1.92939 1.21883 0.92611 1.00994 1.01111 1.18385 0.91149 0.85009 0.95651 1.91607 1.83892 1.53056 1.80900 1.22220 1.00076 0.97309 0.81708 1.21863 0.95635 1.00577 0.97819 1.21242 0.95078 0.99859 0.93654 0.91008 1.20881 0.96843 0.93492 0.85709 1.42555 1.65280 1.29070 1.01543 1.19632 1.26783 1.05921 0.85239 0.91105 1.25477 1.01675 0.98016 1.01255 1.69804 1.44334 1.18510 1.29027 0.85140 0.77123 0.77541 0.80362 1.19375 1.22035 1.22010 0.91839 0.91063 0.92417 0.89501 0.89146 0.76593 0.78704 0.87086 0.89764 0.92832 0.91348 0.95408 0.97306 0.79157 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.82 71.98 0.63 -2.61 16 2 C -0.09 -2.21 2.43 -10.57 -0.03 -2.24 16 3 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 4 C 0.12 2.85 5.74 86.51 0.50 3.35 16 5 N -0.58 -15.11 2.97 -821.43 -2.44 -17.55 16 6 C 0.57 16.01 7.32 86.80 0.63 16.64 16 7 O -0.56 -18.81 15.67 -3.89 -0.06 -18.87 16 8 C 0.02 0.55 6.01 41.88 0.25 0.80 16 9 N -0.41 -7.76 7.27 -184.62 -1.34 -9.10 16 10 C 0.08 0.94 11.17 84.95 0.95 1.89 16 11 C 0.11 1.35 7.35 22.57 0.17 1.51 16 12 F -0.11 -1.21 17.28 44.97 0.78 -0.43 16 13 C -0.14 -1.81 10.14 22.53 0.23 -1.58 16 14 C 0.12 2.45 7.27 22.75 0.17 2.61 16 15 F -0.12 -2.81 16.25 44.97 0.73 -2.08 16 16 C 0.11 2.67 6.02 86.36 0.52 3.19 16 17 C -0.12 -3.58 5.25 30.67 0.16 -3.42 16 18 C -0.08 -2.43 1.73 -10.76 -0.02 -2.45 16 19 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 20 C 0.16 6.14 5.41 86.38 0.47 6.60 16 21 N -0.74 -36.84 5.32 -343.44 -1.83 -38.66 16 22 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 25 N -0.97 -57.91 13.06 21.65 0.28 -57.62 16 26 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.44 6.29 -2.39 -0.02 1.43 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 2.26 7.02 -2.39 -0.02 2.24 16 35 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.11 2.55 4.57 -2.39 -0.01 2.54 16 38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 2.35 7.15 -2.39 -0.02 2.33 16 41 H 0.03 1.09 6.14 -2.39 -0.01 1.07 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.38 19.57 6.85 -92.71 -0.63 18.94 16 44 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -69.36 364.23 4.50 -64.86 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.42 Total: 23.64 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.94 Total: 8.04 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.32 Total: -122.93 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.06 Total: -18.87 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 1.51 Total: -2.51 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.36 4.50 -64.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184675072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.155 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds