Wall clock time and date at job start Wed Apr 1 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47125 * 283.06908 * 3 2 1 5 5 C 1.42898 * 114.00014 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47165 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99790 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.27143 * 35.63792 * 10 9 7 12 12 C 1.53994 * 110.30715 * 273.54614 * 10 9 7 13 13 N 1.47903 * 107.05424 * 242.21042 * 12 10 9 14 14 C 1.46904 * 111.00038 * 214.15460 * 13 12 10 15 15 C 1.50700 * 109.47192 * 170.00163 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 59.99886 * 22 20 18 24 24 H 1.48497 * 109.47531 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47039 * 300.00633 * 22 20 18 26 26 C 1.48527 * 105.82321 * 334.67235 * 13 12 10 27 27 C 1.54594 * 110.39007 * 157.78064 * 10 9 7 28 28 H 1.09002 * 110.72384 * 22.55912 * 27 10 9 29 29 O 1.42902 * 110.72751 * 259.45303 * 27 10 9 30 30 H 4.38449 * 5.44400 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47032 * 163.06761 * 3 2 1 32 32 H 1.09004 * 109.47353 * 43.06855 * 3 2 1 33 33 H 1.09003 * 109.47410 * 59.99847 * 5 4 3 34 34 H 1.09004 * 109.47023 * 300.00050 * 5 4 3 35 35 H 1.09005 * 109.47288 * 60.00134 * 6 5 4 36 36 H 1.09001 * 109.47483 * 300.00542 * 6 5 4 37 37 H 0.96997 * 119.99656 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.91602 * 122.86106 * 12 10 9 39 39 H 1.08999 * 110.08310 * 1.65652 * 12 10 9 40 40 H 1.09009 * 109.46542 * 50.00194 * 14 13 12 41 41 H 1.08998 * 109.47050 * 290.00728 * 14 13 12 42 42 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 43 43 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.66931 * 157.64305 * 26 13 12 45 45 H 1.09001 * 110.66633 * 280.76824 * 26 13 12 46 46 H 0.96692 * 114.00290 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3038 1.3124 5 6 4.5470 -0.3281 1.4224 6 6 4.9417 -0.6616 2.8625 7 6 6.4439 -0.6879 2.9785 8 8 7.1314 -0.4616 2.0052 9 7 7.0237 -0.9628 4.1637 10 6 8.4841 -0.9878 4.2765 11 1 8.9256 -0.2264 3.6336 12 6 9.0252 -2.3808 3.9046 13 7 9.6942 -2.9216 5.1077 14 6 10.8557 -3.7425 4.7400 15 6 11.6505 -4.0713 5.9774 16 8 11.2851 -3.6624 7.0593 17 7 12.7702 -4.8153 5.8811 18 6 13.4963 -5.1097 7.0062 19 1 13.1713 -4.7451 7.9694 20 6 14.6503 -5.8772 6.9071 21 7 15.0459 -6.3205 5.7350 22 14 15.6401 -6.2778 8.4398 23 1 14.7892 -7.0311 9.3957 24 1 16.8171 -7.1031 8.0674 25 1 16.1011 -5.0170 9.0749 26 6 10.1090 -1.7399 5.9062 27 6 8.9149 -0.7660 5.7446 28 1 8.1072 -1.0294 6.4275 29 8 9.3288 0.5861 5.9514 30 1 -1.0500 0.0002 0.0001 31 1 3.0089 0.9839 -0.2993 32 1 3.0097 -0.7499 -0.7018 33 1 4.9490 0.6486 1.1528 34 1 4.9505 -1.0853 0.7501 35 1 4.5397 -1.6382 3.1326 36 1 4.5381 0.0958 3.5346 37 1 6.4739 -1.1441 4.9420 38 1 9.7421 -2.2948 3.0881 39 1 8.2043 -3.0348 3.6106 40 1 11.4838 -3.1906 4.0406 41 1 10.5144 -4.6655 4.2713 42 1 13.0622 -5.1427 5.0160 43 1 15.8518 -6.8560 5.6658 44 1 10.2451 -2.0114 6.9530 45 1 11.0206 -1.3017 5.4997 46 1 9.6087 0.7775 6.8569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192886186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:04 Heat of formation + Delta-G solvation = -93.339031 kcal Electronic energy + Delta-G solvation = -28371.469240 eV Core-core repulsion = 24070.511970 eV Total energy + Delta-G solvation = -4300.957270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43122 -39.23713 -38.39695 -37.79214 -35.80383 -34.56403 -33.90288 -33.85119 -32.00649 -31.35100 -30.06577 -28.09455 -27.38862 -26.44703 -24.45538 -23.74494 -21.64792 -20.91547 -20.43506 -19.31342 -18.89493 -18.02009 -17.79100 -17.48264 -16.83881 -16.58783 -16.23718 -16.03394 -15.46793 -15.35437 -15.01443 -14.77496 -14.71486 -14.15365 -13.89942 -13.77566 -13.70101 -13.18957 -13.12373 -12.96944 -12.58370 -12.45118 -12.18251 -12.00676 -11.87861 -11.72851 -11.58231 -11.35504 -11.02221 -10.98561 -10.88310 -10.66475 -10.45843 -10.28535 -10.26216 -9.99933 -9.94758 -9.53029 -9.33879 -8.47552 -8.09772 -7.97960 -6.46707 -3.88090 2.00711 2.36211 2.37537 2.80078 3.16227 3.22972 3.26646 3.53525 3.77509 3.83147 4.08959 4.11634 4.33372 4.36408 4.50839 4.63807 4.77478 4.81724 4.88102 4.93669 4.97661 5.09221 5.13355 5.20399 5.32613 5.36324 5.39110 5.43190 5.47096 5.65908 5.75727 5.79735 5.85515 6.06674 6.18979 6.28522 6.45947 6.64837 7.00391 7.11715 7.12639 7.24178 7.49944 7.54320 7.95635 7.99616 8.54999 9.11823 9.47429 9.98272 10.70641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.001643 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.341978 B =17035.901890 C =17620.141333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.541 6.541 9 N -0.715 5.715 10 C 0.143 3.857 11 H 0.104 0.896 12 C 0.026 3.974 13 N -0.490 5.490 14 C 0.036 3.964 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.302 4.302 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.899 5.899 22 Si 0.932 3.068 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.010 3.990 27 C 0.091 3.909 28 H 0.076 0.924 29 O -0.563 6.563 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.403 0.597 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.393 0.607 43 H 0.273 0.727 44 H 0.125 0.875 45 H 0.049 0.951 46 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.657 11.975 -8.635 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.180 4.180 7 C 0.306 3.694 8 O -0.418 6.418 9 N -0.367 5.367 10 C 0.038 3.962 11 H 0.122 0.878 12 C -0.103 4.103 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.469 6.469 17 N -0.194 5.194 18 C -0.432 4.432 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.540 5.540 22 Si 0.759 3.241 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.118 4.118 27 C 0.030 3.970 28 H 0.094 0.906 29 O -0.368 6.368 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.226 0.774 43 H 0.083 0.917 44 H 0.143 0.857 45 H 0.068 0.932 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.810 11.958 -8.857 26.403 hybrid contribution 1.197 -0.205 0.388 1.275 sum -20.613 11.753 -8.468 25.194 Atomic orbital electron populations 1.24997 0.95917 1.00665 0.97643 1.22564 0.93916 1.00744 1.02122 1.19054 0.84619 1.00986 0.85500 1.87863 1.21723 1.92118 1.28956 1.22163 0.79747 1.01910 0.96076 1.21457 0.92401 1.05637 0.98465 1.20359 0.90005 0.76018 0.82994 1.90735 1.65322 1.48803 1.36933 1.45993 1.07202 1.71679 1.11811 1.21710 0.79934 0.97825 0.96755 0.87781 1.23355 0.99623 0.94150 0.93161 1.64587 1.24381 1.17524 1.15097 1.22135 0.91561 0.98869 0.97038 1.19656 0.83362 0.84490 0.89822 1.90412 1.70640 1.56830 1.29059 1.41845 1.21391 1.45543 1.10657 1.19653 1.04512 1.30240 0.88764 0.87892 1.25277 0.97540 0.96748 0.98229 1.69607 1.25069 1.35982 1.23369 0.85906 0.78729 0.78585 0.80926 1.19848 1.20937 1.19894 1.24130 0.95247 0.89003 1.03380 1.23017 0.96845 0.82135 0.94963 0.90648 1.86454 1.87783 1.27242 1.35335 0.76124 0.90589 0.90540 0.91946 0.91849 0.87691 0.87832 0.76149 0.92671 0.89696 0.93023 0.88949 0.77379 0.91722 0.85683 0.93237 0.76740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 19.25 29.55 0.57 -0.64 16 2 C -0.19 -1.63 13.73 -37.12 -0.51 -2.14 16 3 C 0.17 1.28 6.41 34.37 0.22 1.50 16 4 O -0.39 -3.52 10.30 -35.23 -0.36 -3.89 16 5 C 0.08 0.64 5.23 37.16 0.19 0.84 16 6 C -0.14 -1.04 6.07 -27.89 -0.17 -1.21 16 7 C 0.52 5.44 7.82 -10.99 -0.09 5.35 16 8 O -0.54 -7.67 15.68 5.55 0.09 -7.58 16 9 N -0.72 -6.98 5.03 -52.49 -0.26 -7.24 16 10 C 0.14 1.77 3.06 -66.57 -0.20 1.57 16 11 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 12 C 0.03 0.36 6.48 -2.75 -0.02 0.34 16 13 N -0.49 -7.90 5.26 -231.89 -1.22 -9.12 16 14 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 15 C 0.44 10.06 7.49 -10.98 -0.08 9.98 16 16 O -0.58 -14.76 13.10 5.55 0.07 -14.69 16 17 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 22 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 27 C 0.09 1.11 4.14 -24.87 -0.10 1.01 16 28 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 29 O -0.56 -6.68 13.41 -35.23 -0.47 -7.15 16 30 H 0.22 0.69 7.80 -54.09 -0.42 0.27 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.91 8.35 -40.82 -0.34 2.57 16 38 H 0.06 0.76 7.57 -51.93 -0.39 0.36 16 39 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.05 0.85 7.81 -51.92 -0.41 0.45 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.13 2.29 5.97 -51.93 -0.31 1.98 16 45 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 46 H 0.38 3.10 9.12 45.56 0.42 3.51 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -34.25 395.56 -6.89 -41.14 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -5.87 Total: 14.74 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.47 Total: 9.51 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.82 Total: -53.67 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.68 Total: -33.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.25 -6.89 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192886186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.199 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds